Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003104

Physical Location & Seq

Genomic Coordinates Forward (+)

89177593 .. 89177928

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGATCTCAAATCCTGCCTTGTTGTGTTCCTCGTGGCCTTAGCCATGGTGGCCGCAGTCGAGTCCTCAAAGATCCACGATGCCGCCTGGGGTCTCAAACAGCGCCACAACAATGTGGGTGACCTGATCGGAGAAGAAACTGAGATGTTACTGGACTCCGAAGCCGGCCGGCGTCAACTTATGCAAGGCCGTTACATTAGCTACGAAGCCCTTAAGAAAGACAACATACCGTGTGGCCAGCGCGGCAAATCCTACTATGACTGCAATAACAGAAAGCAGGTCAATTCTTACCGCCGAGGTTGTACTTACATTACTCGATGTGCCCGCGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005623 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0010769 GO:0019722 GO:0019932 GO:0022603 GO:0022604 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0040008 GO:0042995 GO:0043900 GO:0044464 GO:0045595 GO:0048018 GO:0048046 GO:0048583 GO:0048638 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051239 GO:0051510 GO:0051716 GO:0055044 GO:0060284 GO:0065007 GO:0065009 GO:0080092 GO:0090406 GO:0098772 GO:0120025 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

111

Amino Acids

12.56

Weight (kDa)

8.87

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	48 - 109	4.9e-25	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28270 AT2G33775 AT3G05490
fragaria_vesca	FvH4_3g09010 FvH4_3g09020
malus_domestica	MD00G1116200.v1.1 MD10G1292800.v1.1 MD10G1292900.v1.1
prunus_persica	Prupe.4G049000_v2.0.a1
pyrus_communis	pycom05g28940 pycom10g24490
rosa_chinensis	RchiOBHm_Chr5g0008651 RchiOBHm_Chr5g0008661 RchiOBHm_Chr5g0008671
rosa_laevigata	RLG00000031590 RLG00000031591 RLG00000031592
rosa_multiflora	Rmu_sc0001665.1_g000030 Rmu_sc0001665.1_g000031 Rmu_sc0001665.1_g000040
rosa_roxburghii	Rroxscaffold_1G00067890 Rroxscaffold_1G00067900 Rroxscaffold_1G00067910
rosa_rugosa	Rorug04G0437700 Rorug04G0437700 Rorug04G0437700
rosa_samantha	Rh5AG066300 Rh5BG063600 Rh5BG063700 Rh5CG073800 Rh5CG073900 Rh5CG074100 Rh5DG062500 Rh5DG062600
rosa_wichuraiana	Rw5G006230 Rw5G006260 Rw5G006270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	268
AccII	CGCG	2 cut(s)	243, 327
AciI	CCGC	6 cut(s)	54, 84, 243, 292, 325, 327
AclWI	GGATC	2 cut(s)	12, 67
AcoI	YGGCCR	3 cut(s)	51, 166, 235
AcyI	GRCGYC	1 cut(s)	172
AfaI	GTAC	1 cut(s)	304
AflII	CTTAAG	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	86
AluBI	AGCT	1 cut(s)	201
AluI	AGCT	1 cut(s)	201
Alw26I	GTCTC	1 cut(s)	98
AlwI	GGATC	2 cut(s)	12, 67
AoxI	GGCC	5 cut(s)	36, 51, 166, 187, 235
AspLEI	GCGC	2 cut(s)	105, 243
AsuHPI	GGTGA	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	237
BauI	CACGAG	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	174
BciT130I	CCWGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	98
BfoI	RGCGCY	1 cut(s)	106
BfrI	CTTAAG	1 cut(s)	212
BfuAI	ACCTGC	1 cut(s)	268
BglI	GCCNNNNNGGC	2 cut(s)	50, 243
BisI	GCNGC	3 cut(s)	54, 84, 244
BlsI	GCNGC	3 cut(s)	55, 85, 245
Bme1390I	CCNGG	1 cut(s)	88
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	70
Bpu10I	CCTNAGC	1 cut(s)	40
BsaHI	GRCGYC	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	98
BsaJI	CCNNGG	4 cut(s)	45, 87, 295, 325
Bse118I	RCCGGY	2 cut(s)	164, 168
Bse1I	ACTGG	1 cut(s)	156
BseBI	CCWGG	1 cut(s)	88
BseDI	CCNNGG	4 cut(s)	45, 87, 295, 325
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	325
BseX3I	CGGCCG	1 cut(s)	166
Bsh1236I	CGCG	2 cut(s)	243, 327
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	5 cut(s)	38, 53, 168, 189, 237
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	2 cut(s)	165, 169
BsmAI	GTCTC	1 cut(s)	98
BsnI	GGCC	5 cut(s)	38, 53, 168, 189, 237
Bso31I	GGTCTC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	4, 72, 126
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	6 cut(s)	54, 84, 243, 292, 325, 327
BspANI	GGCC	5 cut(s)	38, 53, 168, 189, 237
BspCNI	CTCAG	1 cut(s)	133
BspFNI	CGCG	2 cut(s)	243, 327
BspMI	ACCTGC	1 cut(s)	268
BspPI	GGATC	2 cut(s)	12, 67
BspTI	CTTAAG	1 cut(s)	212
BspTNI	GGTCTC	1 cut(s)	98
BsrFI	RCCGGY	2 cut(s)	164, 168
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	2 cut(s)	164, 168
BssECI	CCNNGG	4 cut(s)	45, 87, 295, 325
BssMI	GATC	3 cut(s)	4, 72, 126
BssNI	GRCGYC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	88
Bst4CI	ACNGT	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	172
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	4 cut(s)	166, 170, 239, 325
BstDEI	CTNAG	2 cut(s)	40, 141
BstDSI	CCRYGG	2 cut(s)	45, 325
BstEII	GGTNACC	1 cut(s)	119
BstFNI	CGCG	2 cut(s)	243, 327
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	105, 243
BstKTI	GATC	3 cut(s)	7, 75, 129
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	3 cut(s)	4, 72, 126
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 243
BstNI	CCWGG	1 cut(s)	88
BstPI	GGTNACC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	86
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	2 cut(s)	243, 327
BstX2I	RGATCY	2 cut(s)	4, 72
BstYI	RGATCY	2 cut(s)	4, 72
BstZI	CGGCCG	1 cut(s)	166
BsuRI	GGCC	5 cut(s)	38, 53, 168, 189, 237
BtgI	CCRYGG	2 cut(s)	45, 325
BveI	ACCTGC	1 cut(s)	268
Cac8I	GCNNGC	4 cut(s)	166, 170, 239, 325
CfoI	GCGC	2 cut(s)	105, 243
Cfr10I	RCCGGY	2 cut(s)	164, 168
Cfr42I	CCGCGG	1 cut(s)	328
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	9 cut(s)	38, 44, 53, 164, 168, 189, 201, 209, 237
CviKI_1	RGCY	9 cut(s)	38, 44, 53, 164, 168, 189, 201, 209, 237
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	40, 141
DpnI	GATC	3 cut(s)	6, 74, 128
DpnII	GATC	3 cut(s)	4, 72, 126
EaeI	YGGCCR	3 cut(s)	51, 166, 235
EagI	CGGCCG	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	98
Eco52I	CGGCCG	1 cut(s)	166
Eco91I	GGTNACC	1 cut(s)	119
EcoO65I	GGTNACC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	1 cut(s)	49
FaiI	YATR	4 cut(s)	47, 182, 227, 258
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	332
Fnu4HI	GCNGC	3 cut(s)	54, 84, 244
Fsp4HI	GCNGC	3 cut(s)	54, 84, 244
GlaI	GCGC	2 cut(s)	104, 242
GluI	GCNGC	3 cut(s)	54, 84, 244
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	5 cut(s)	38, 53, 168, 189, 237
HapII	CCGG	2 cut(s)	165, 169
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	105, 243
Hin1I	GRCGYC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	2 cut(s)	103, 241
HinP1I	GCGC	2 cut(s)	103, 241
HincII	GTYRAC	1 cut(s)	176
HindII	GTYRAC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	62, 155
HpaII	CCGG	2 cut(s)	165, 169
HphI	GGTGA	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	176
Hpy188I	TCNGA	2 cut(s)	131, 160
Hpy8I	GTNNAC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	184, 264
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 243
HpyF3I	CTNAG	2 cut(s)	40, 141
Hsp92I	GRCGYC	1 cut(s)	172
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	2 cut(s)	103, 241
KroI	GCCGGC	2 cut(s)	164, 168
KroNI	GCCGGC	2 cut(s)	166, 170
KspI	CCGCGG	1 cut(s)	328
Kzo9I	GATC	3 cut(s)	4, 72, 126
LpnPI	CCDG	9 cut(s)	28, 73, 100, 137, 137, 178, 182, 251, 263
LweI	GCATC	1 cut(s)	70
MaeIII	GTNAC	3 cut(s)	119, 147, 191
MalI	GATC	3 cut(s)	6, 74, 128
MboI	GATC	3 cut(s)	4, 72, 126
MboII	GAAGA	1 cut(s)	146
MflI	RGATCY	2 cut(s)	4, 72
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	237
MluCI	AATT	1 cut(s)	283
MluNI	TGGCCA	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	71, 149
MnlI	CCTC	3 cut(s)	41, 76, 290
Mox20I	TGGCCA	1 cut(s)	237
MroNI	GCCGGC	2 cut(s)	164, 168
MscI	TGGCCA	1 cut(s)	237
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	237
MspA1I	CMGCKG	1 cut(s)	327
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	2 cut(s)	165, 169
MspR9I	CCNGG	1 cut(s)	88
MvaI	CCWGG	1 cut(s)	88
MvnI	CGCG	2 cut(s)	243, 327
MwoI	GCNNNNNNNGC	2 cut(s)	50, 243
NaeI	GCCGGC	2 cut(s)	166, 170
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	4, 72, 126
NgoMIV	GCCGGC	2 cut(s)	164, 168
NlaIII	CATG	1 cut(s)	49
NmeAIII	GCCGAG	1 cut(s)	320
NmuCI	GTSAC	1 cut(s)	119
PdiI	GCCGGC	2 cut(s)	166, 170
PkrI	GCNGC	3 cut(s)	55, 85, 245
PleI	GAGTC	2 cut(s)	70, 149
PpsI	GAGTC	2 cut(s)	70, 149
Psp6I	CCWGG	1 cut(s)	86
PspEI	GGTNACC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	86
PsuI	RGATCY	2 cut(s)	4, 72
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	111
SacII	CCGCGG	1 cut(s)	328
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	54, 84, 244
Sau3AI	GATC	3 cut(s)	4, 72, 126
SchI	GAGTC	2 cut(s)	71, 149
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	4 cut(s)	126, 203, 282, 301
SfaNI	GCATC	1 cut(s)	70
Sfr303I	CCGCGG	1 cut(s)	328
SgrBI	CCGCGG	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	111
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	6 cut(s)	54, 84, 243, 292, 325, 327
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	45
TaaI	ACNGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	60, 316
TasI	AATT	1 cut(s)	283
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	3 cut(s)	56, 86, 246
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
Vha464I	CTTAAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.