FvH4_3g11010

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018275
Physical Location & Seq
Reverse (-)
6502288 .. 6503928
1641 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11010.t1

Sequence Viewer

Length: 1641 bp
ATGTGGCGAAAGCCAACTCCCAAAGTCATGTCAACCCAAACTACTTCTGCAACTCTGGCAGTTGTCACCTTCCTTCTTCTCCATGCTTCCATGGCAGCTTTAGATTCAATCCAAGACACCTTCCTCCAATGCCTCTCCAATCTTACCCAATCCCCATCTCCATCAATCTCATCAGTCACCTATTTCCCCACCGACCCTTCATACACACCAATCTTACATTCATACATAAGAAACCTTAGATTCACAACCCCCAAAACCCCAACACCCTCATTCATTGTCACTCCAACACATGTCTCTCACATCCAAGCCTCAATCCTCTGCTCCAAAATCCATAACCTTCAAGTCAGAATCCGCAGTGGTGGCCATGACTATGATGGCCTCTCTTACATCTCAGATGTTCCATTCATTATTATTGATATGTTCAATCTTCGATCCATAACAGTTAACATTGAAGAAGAAAGTGCTTGGGTCGAGTCTGGAGCAACACTAGGTGAAGTTTATTACAGAATAGCTGAGCAGAGCAAAATCCATGGCTACCCAGCTGGGGTTTGTCCTACTGTGGGAGTTGGAGGACACTTAAGTGGAGGTGGGTATGGAAATATGATGAGGAAACATGGGTTATCAGTTGATAACATTCTTGATGCTCAAATAGTTGATGTTAATGGAAGGCTTTTGGATAGAGAGTCAATGGGGGAAGACCTCTTTTGGGCTATTAGAGGTGGAGGTGGAGCTAGTTTTGGTGTCATTGTTTCGTGGAAGATCAAATTGGTTCAAGTCCCAGAAGTTGTCACAGTTTTTAGAGTTGAGAGGACTTTGGAGCAAGGCGCCACCGACATTGTTCATCAATGGCAGCATGTAGGGAATACAATAGATGATGATCTTTTCATTAGGGTGGTTGTGATGCCGGTGAATAGGAAAACACAGAGGACTGTGAAAGCTAAATTTGTTGCTTTGTATTTAGGAAATGCAGAAAAGCTTGAAGCTTTGATGGGTGAGAGGTTTCCCCGATTGGGTTTGAAGCATGAGGACTATGTCGAAATCGGTTGGATCGAATCGGTCCTGTATTGGTCTAACTATCCAATTGGAACCTCTGCAGATGTGCTGCTTGAAAGAATACCACAGTCAGAAAAGTTCTTGAAGAAGAAATCTGACTACATCCAAGAACCAATGTCAAAGGCTAGTCTTGAAGGGCTGTGGAACAAGATGAGGGAGCTGAAAAAGCCAGTACTAACATTCAATCCTTATGGTGGGAAAATGAGCAAAATTTCGGAGCTTGACACCCCATTCCCACATAGAGCAGGAAATGTGTACAAAATCCAGTACTCAGTGAATTGGAAAGAGGAAGGTTCAGAGGCTGAAGATAAACATCTTGATTTGATAAGGAGGCTTTACAAGTATATGGCACCTTATGTGTCAAAGTCACCAAGGTGTTCATATCTAAATTACAGAGATGTTGATTTGGGGACTAATGGAAACGGCAATGTGAGCTACTCAGAAGCTAGTGTTTGGGGGACAAACTACTTTAAGGGAAACTTTGAGAGGTTGGTACAAGTGAAGACTGCTGTTGATCCAGGAAACTTTTTCAGGTATGAACAAAGTATCCCACCTCTTACTTCTTGGAATGGCAAAATGGTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

547

Amino Acids

61.45

Weight (kDa)

8.11

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 89 - 225 9.3e-23 FAD binding domain
BBE PF08031 478 - 535 2.5e-20 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11010
malus_domestica MD05G1267500.v1.1
prunus_persica Prupe.4G098400_v2.0.a1
pyrus_communis pycom05g25050
rosa_chinensis RchiOBHm_Chr5g0017721
rosa_laevigata RLG00000032309
rosa_multiflora Rmu_sc0015477.1_g000001
rosa_roxburghii Rroxscaffold_1G00059770
rosa_rugosa Rorug05G0037500
rosa_wichuraiana Rw5G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 824, 1402
AciI CCGC 1 cut(s) 352
AclWI GGATC 3 cut(s) 426, 1055, 1562
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 2 cut(s) 941, 1263
AcuI CTGAAG 1 cut(s) 1377
AcyI GRCGYC 1 cut(s) 825
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 4 cut(s) 1227, 1310, 1322, 1548
AfiI CCNNNNNNNGG 5 cut(s) 544, 560, 706, 1010, 1247
AflII CTTAAG 1 cut(s) 577
AflIII ACRYGT 1 cut(s) 289
AjnI CCWGG 1 cut(s) 1570
AjuI GAANNNNNNNTTGG 4 cut(s) 202, 234, 749, 781
AleI CACNNNNGTG 2 cut(s) 579, 1426
AloI GAACNNNNNNTCC 2 cut(s) 1584, 1616
Alw26I GTCTC 1 cut(s) 298
AlwI GGATC 3 cut(s) 426, 1055, 1562
AlwNI CAGNNNCTG 1 cut(s) 1355
AoxI GGCC 2 cut(s) 361, 376
ApeKI GCWGC 3 cut(s) 95, 850, 1102
ApoI RAATTY 2 cut(s) 941, 1263
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 1 cut(s) 1057
AsuHPI GGTGA 6 cut(s) 58, 169, 503, 919, 1004, 1413
AvaII GGWCC 1 cut(s) 1057
BalI TGGCCA 1 cut(s) 363
BanI GGYRCC 2 cut(s) 824, 1402
BbsI GAAGAC 2 cut(s) 702, 1562
BbvI GCAGC 3 cut(s) 107, 862, 1089
BccI CCATC 4 cut(s) 163, 169, 368, 982
BceAI ACGGC 1 cut(s) 1492
BciT130I CCWGG 1 cut(s) 1572
BciVI GTATCC 1 cut(s) 1610
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 4 cut(s) 488, 732, 1179, 1500
BfmI CTRYAG 1 cut(s) 1092
BfoI RGCGCY 1 cut(s) 828
BfrI CTTAAG 1 cut(s) 577
BfuI GTATCC 1 cut(s) 1610
BisI GCNGC 3 cut(s) 96, 851, 1103
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 3 cut(s) 97, 852, 1104
BmcAI AGTACT 2 cut(s) 1227, 1322
Bme1390I CCNGG 1 cut(s) 1572
Bme18I GGWCC 1 cut(s) 1057
BmgT120I GGNCC 1 cut(s) 1057
BmiI GGNNCC 3 cut(s) 826, 1087, 1404
BmrFI CCNGG 1 cut(s) 1572
BmsI GCATC 2 cut(s) 631, 891
BpiI GAAGAC 2 cut(s) 702, 1562
BpmI CTGGAG 1 cut(s) 498
Bpu1102I GCTNAGC 1 cut(s) 513
BsaBI GATNNNNATC 2 cut(s) 876, 1365
BsaHI GRCGYC 1 cut(s) 825
BsaJI CCNNGG 3 cut(s) 90, 529, 1424
Bsc4I CCNNNNNNNGG 5 cut(s) 544, 560, 706, 1010, 1247
Bse118I RCCGGY 1 cut(s) 904
Bse1I ACTGG 2 cut(s) 1223, 1318
Bse3DI GCAATG 1 cut(s) 1486
Bse8I GATNNNNATC 2 cut(s) 876, 1365
BseBI CCWGG 1 cut(s) 1572
BseDI CCNNGG 3 cut(s) 90, 529, 1424
BseGI GGATG 2 cut(s) 300, 1155
BseJI GATNNNNATC 2 cut(s) 876, 1365
BseLI CCNNNNNNNGG 5 cut(s) 544, 560, 706, 1010, 1247
BseMI GCAATG 1 cut(s) 1486
BseMII CTCAG 4 cut(s) 405, 504, 1338, 1506
BseNI ACTGG 2 cut(s) 1223, 1318
BseXI GCAGC 3 cut(s) 107, 862, 1089
BseYI CCCAGC 2 cut(s) 538, 542
BshFI GGCC 2 cut(s) 363, 378
BshNI GGYRCC 2 cut(s) 824, 1402
BsiSI CCGG 1 cut(s) 905
BslFI GGGAC 3 cut(s) 761, 1477, 1525
BslI CCNNNNNNNGG 5 cut(s) 544, 560, 706, 1010, 1247
BsmAI GTCTC 1 cut(s) 298
BsmFI GGGAC 3 cut(s) 761, 1477, 1525
BsnI GGCC 2 cut(s) 363, 378
Bsp1407I TGTACA 1 cut(s) 1308
Bsp143I GATC 5 cut(s) 431, 759, 877, 1047, 1567
Bsp1720I GCTNAGC 1 cut(s) 513
Bsp19I CCATGG 2 cut(s) 90, 529
BspACI CCGC 1 cut(s) 352
BspANI GGCC 2 cut(s) 363, 378
BspCNI CTCAG 4 cut(s) 404, 505, 1337, 1505
BspLI GGNNCC 3 cut(s) 826, 1087, 1404
BspMAI CTGCAG 1 cut(s) 1096
BspPI GGATC 3 cut(s) 426, 1055, 1562
BspT107I GGYRCC 2 cut(s) 824, 1402
BspTI CTTAAG 1 cut(s) 577
BsrDI GCAATG 1 cut(s) 1486
BsrFI RCCGGY 1 cut(s) 904
BsrGI TGTACA 1 cut(s) 1308
BsrI ACTGG 2 cut(s) 1223, 1318
BssAI RCCGGY 1 cut(s) 904
BssECI CCNNGG 3 cut(s) 90, 529, 1424
BssMI GATC 5 cut(s) 431, 759, 877, 1047, 1567
BssNI GRCGYC 1 cut(s) 825
BssT1I CCWWGG 3 cut(s) 90, 529, 1424
Bst2UI CCWGG 1 cut(s) 1572
Bst4CI ACNGT 5 cut(s) 442, 559, 793, 931, 1122
BstACI GRCGYC 1 cut(s) 825
BstAFI CTTAAG 1 cut(s) 577
BstAUI TGTACA 1 cut(s) 1308
BstDEI CTNAG 5 cut(s) 236, 391, 513, 1324, 1492
BstDSI CCRYGG 2 cut(s) 90, 529
BstF5I GGATG 2 cut(s) 300, 1155
BstH2I RGCGCY 1 cut(s) 828
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 5 cut(s) 434, 762, 880, 1050, 1570
BstMAI GTCTC 1 cut(s) 298
BstMBI GATC 5 cut(s) 431, 759, 877, 1047, 1567
BstMWI GCNNNNNNNGC 5 cut(s) 56, 92, 360, 1219, 1485
BstNI CCWGG 1 cut(s) 1572
BstNSI RCATGY 2 cut(s) 293, 857
BstSCI CCNGG 1 cut(s) 1570
BstSFI CTRYAG 1 cut(s) 1092
BstV1I GCAGC 3 cut(s) 107, 862, 1089
BstV2I GAAGAC 2 cut(s) 702, 1562
BsuI GTATCC 1 cut(s) 1610
BsuRI GGCC 2 cut(s) 363, 378
BtgI CCRYGG 2 cut(s) 90, 529
BtsCI GGATG 2 cut(s) 300, 1155
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 1332
CaiI CAGNNNCTG 1 cut(s) 1355
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 1 cut(s) 904
Cfr13I GGNCC 1 cut(s) 1057
Csp6I GTAC 4 cut(s) 1226, 1309, 1321, 1547
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
CviAII CATG 9 cut(s) 28, 83, 91, 290, 365, 530, 614, 854, 1022
CviQI GTAC 4 cut(s) 1226, 1309, 1321, 1547
DdeI CTNAG 5 cut(s) 236, 391, 513, 1324, 1492
DinI GGCGCC 1 cut(s) 826
DpnI GATC 5 cut(s) 433, 761, 879, 1049, 1569
DpnII GATC 5 cut(s) 431, 759, 877, 1047, 1567
DraIII CACNNNGTG 1 cut(s) 491
EaeI YGGCCR 1 cut(s) 361
Eco130I CCWWGG 3 cut(s) 90, 529, 1424
Eco47I GGWCC 1 cut(s) 1057
Eco57I CTGAAG 1 cut(s) 1377
EcoRII CCWGG 1 cut(s) 1570
EcoT14I CCWWGG 3 cut(s) 90, 529, 1424
EgeI GGCGCC 1 cut(s) 826
EheI GGCGCC 1 cut(s) 826
ErhI CCWWGG 3 cut(s) 90, 529, 1424
FaeI CATG 9 cut(s) 31, 86, 94, 293, 368, 533, 617, 857, 1025
FalI AAGNNNNNCTT 2 cut(s) 1517, 1549
FaqI GGGAC 3 cut(s) 761, 1477, 1525
FatI CATG 9 cut(s) 27, 82, 90, 289, 364, 529, 613, 853, 1021
Fnu4HI GCNGC 3 cut(s) 96, 851, 1103
FokI GGATG 2 cut(s) 287, 1142
Fsp4HI GCNGC 3 cut(s) 96, 851, 1103
FspBI CTAG 4 cut(s) 488, 732, 1179, 1500
GlaI GCGC 1 cut(s) 826
GluI GCNGC 3 cut(s) 96, 851, 1103
GsaI CCCAGC 2 cut(s) 542, 546
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 828
HaeIII GGCC 2 cut(s) 363, 378
HapII CCGG 1 cut(s) 905
HhaI GCGC 1 cut(s) 827
Hin1I GRCGYC 1 cut(s) 825
Hin1II CATG 9 cut(s) 31, 86, 94, 293, 368, 533, 617, 857, 1025
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HincII GTYRAC 2 cut(s) 33, 445
HindII GTYRAC 2 cut(s) 33, 445
HindIII AAGCTT 2 cut(s) 974, 981
HinfI GANTC 6 cut(s) 104, 240, 348, 473, 683, 1052
HpaI GTTAAC 1 cut(s) 445
HpaII CCGG 1 cut(s) 905
HphI GGTGA 6 cut(s) 58, 169, 503, 919, 1004, 1413
Hpy166II GTNNAC 3 cut(s) 33, 445, 1309
Hpy188I TCNGA 7 cut(s) 347, 394, 1126, 1150, 1270, 1351, 1495
Hpy188III TCNNGA 5 cut(s) 477, 638, 1135, 1184, 1370
Hpy8I GTNNAC 3 cut(s) 33, 445, 1309
HpyAV CCTTC 8 cut(s) 79, 83, 130, 207, 347, 660, 1181, 1337
HpyCH4III ACNGT 5 cut(s) 442, 559, 793, 931, 1122
HpyCH4V TGCA 3 cut(s) 50, 968, 1094
HpyF10VI GCNNNNNNNGC 5 cut(s) 56, 92, 360, 1219, 1485
HpyF3I CTNAG 5 cut(s) 236, 391, 513, 1324, 1492
Hsp92I GRCGYC 1 cut(s) 825
Hsp92II CATG 9 cut(s) 31, 86, 94, 293, 368, 533, 617, 857, 1025
HspAI GCGC 1 cut(s) 825
KasI GGCGCC 1 cut(s) 824
KspAI GTTAAC 1 cut(s) 445
Kzo9I GATC 5 cut(s) 431, 759, 877, 1047, 1567
LmnI GCTCC 6 cut(s) 326, 479, 728, 817, 1210, 1270
Lsp1109I GCAGC 3 cut(s) 107, 862, 1089
LweI GCATC 2 cut(s) 631, 891
MaeI CTAG 4 cut(s) 488, 732, 1179, 1500
MaeIII GTNAC 5 cut(s) 64, 175, 277, 787, 1419
MalI GATC 5 cut(s) 433, 761, 879, 1049, 1569
MboI GATC 5 cut(s) 431, 759, 877, 1047, 1567
MfeI CAATTG 1 cut(s) 1080
MlsI TGGCCA 1 cut(s) 363
MluCI AATT 6 cut(s) 764, 941, 1080, 1263, 1330, 1441
MluNI TGGCCA 1 cut(s) 363
Mly113I GGCGCC 1 cut(s) 825
MlyI GAGTC 2 cut(s) 482, 692
MmeI TCCRAC 3 cut(s) 308, 547, 1025
Mox20I TGGCCA 1 cut(s) 363
MscI TGGCCA 1 cut(s) 363
MseI TTAA 4 cut(s) 444, 578, 660, 1524
MslI CAYNNNNRTG 4 cut(s) 369, 579, 890, 1426
Msp20I TGGCCA 1 cut(s) 363
MspA1I CMGCKG 1 cut(s) 542
MspCI CTTAAG 1 cut(s) 577
MspI CCGG 1 cut(s) 905
MspR9I CCNGG 1 cut(s) 1572
MunI CAATTG 1 cut(s) 1080
MvaI CCWGG 1 cut(s) 1572
MwoI GCNNNNNNNGC 5 cut(s) 56, 92, 360, 1219, 1485
NarI GGCGCC 1 cut(s) 825
NcoI CCATGG 2 cut(s) 90, 529
NdeII GATC 5 cut(s) 431, 759, 877, 1047, 1567
NlaIII CATG 9 cut(s) 31, 86, 94, 293, 368, 533, 617, 857, 1025
NlaIV GGNNCC 3 cut(s) 826, 1087, 1404
NmuCI GTSAC 5 cut(s) 64, 175, 277, 787, 1419
NspI RCATGY 2 cut(s) 293, 857
OliI CACNNNNGTG 2 cut(s) 579, 1426
PciI ACATGT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PfeI GAWTC 4 cut(s) 104, 240, 348, 1052
PflFI GACNNNGTC 1 cut(s) 1031
PfoI TCCNGGA 1 cut(s) 1570
PkrI GCNGC 3 cut(s) 97, 852, 1104
PleI GAGTC 2 cut(s) 481, 691
PluTI GGCGCC 1 cut(s) 828
PpsI GAGTC 2 cut(s) 481, 691
PscI ACATGT 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 1570
PspFI CCCAGC 2 cut(s) 538, 542
PspGI CCWGG 1 cut(s) 1570
PspN4I GGNNCC 3 cut(s) 826, 1087, 1404
PspPI GGNCC 1 cut(s) 1057
PstI CTGCAG 1 cut(s) 1096
PstNI CAGNNNCTG 1 cut(s) 1355
PsyI GACNNNGTC 1 cut(s) 1031
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 4 cut(s) 1227, 1310, 1322, 1548
RsaNI GTAC 4 cut(s) 1226, 1309, 1321, 1547
RseI CAYNNNNRTG 4 cut(s) 369, 579, 890, 1426
SaqAI TTAA 4 cut(s) 444, 578, 660, 1524
SatI GCNGC 3 cut(s) 96, 851, 1103
Sau3AI GATC 5 cut(s) 431, 759, 877, 1047, 1567
Sau96I GGNCC 1 cut(s) 1057
ScaI AGTACT 2 cut(s) 1227, 1322
SchI GAGTC 2 cut(s) 482, 692
ScrFI CCNGG 1 cut(s) 1572
SfaNI GCATC 2 cut(s) 631, 891
SfcI CTRYAG 1 cut(s) 1092
SfoI GGCGCC 1 cut(s) 826
SinI GGWCC 1 cut(s) 1057
SmiMI CAYNNNNRTG 4 cut(s) 369, 579, 890, 1426
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
Sse9I AATT 6 cut(s) 764, 941, 1080, 1263, 1330, 1441
SsiI CCGC 1 cut(s) 352
SspDI GGCGCC 1 cut(s) 824
SspMI CTAG 4 cut(s) 488, 732, 1179, 1500
StyD4I CCNGG 1 cut(s) 1570
StyI CCWWGG 3 cut(s) 90, 529, 1424
TaaI ACNGT 5 cut(s) 442, 559, 793, 931, 1122
TaqI TCGA 4 cut(s) 430, 471, 1035, 1050
TaqII GACCGA 1 cut(s) 1045
TasI AATT 6 cut(s) 764, 941, 1080, 1263, 1330, 1441
TatI WGTACW 3 cut(s) 1225, 1308, 1320
TfiI GAWTC 4 cut(s) 104, 240, 348, 1052
Tru1I TTAA 4 cut(s) 444, 578, 660, 1524
Tru9I TTAA 4 cut(s) 444, 578, 660, 1524
TscAI CASTG 2 cut(s) 361, 1332
TseFI GTSAC 5 cut(s) 64, 175, 277, 787, 1419
TseI GCWGC 3 cut(s) 95, 850, 1102
Tsp45I GTSAC 5 cut(s) 64, 175, 277, 787, 1419
TspDTI ATGAA 8 cut(s) 189, 210, 262, 394, 830, 874, 1422, 1605
TspRI CASTG 2 cut(s) 361, 1332
Tth111I GACNNNGTC 1 cut(s) 1031
Vha464I CTTAAG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 1057
XapI RAATTY 2 cut(s) 941, 1263
XceI RCATGY 2 cut(s) 293, 857
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
XspI CTAG 4 cut(s) 488, 732, 1179, 1500
ZrmI AGTACT 2 cut(s) 1227, 1322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.