Prupe.4G098400_v2.0.a1

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0018275
Physical Location & Seq
Reverse (-)
4996981 .. 4998534
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G098400.1

Sequence Viewer

Length: 1554 bp
ATGGCAGCTTCAAATCCAACCCAAGACACCTTCTTCCTCCAATGCCTTTCCAATCATTCCCAATATTCCTCCCCACCAATCTCTGCAGTCACCTACTTCCCCAACAACTCTTCATACACATCCATCTTGCAGTCATATATCAGAAACCTGCGCTTCATAACCCCCACAACCCCAAAGCCACTGTTCATAGTCACTCCCACACACGTTTCCCACATCCAAGCTTCAATCTTTTGCTCCAAAATCCATGCCCTTCAAGTCAGAATCCGCAGTGGCGGCCACGACTATGATGGGCTCTCTTATGTGTCTCAAGTTCCGTTCATCATCGTTGACATGTTCAGTTTAAGATCCATAAGTGTCAAAGTAGAAGATGAGAGTGCTTGGGTTGAATCTGGAGCAACATTGGGTGAAGTTTATTACAGAGTAGCAGAGCAGAGCAAGATCCATGGCTTTCCAGCTGGTGTTTGCCCCACAGTTGGGGTTGGAGGACACTTGAGTGGAGGTGGGTATGGTAATATGATGAGAAAATATGGCCTTTCTGTTGATAACATACTTGATGCTCAAATTGTTGATGTTAATGGAAGACTTTTAGATAGAGAGTCAATGGGAGAAGACCTATTTTGGGCTATTAGAGGTGGAGGTGGAGCTAGCTTTGGTGTGATTGTTTCTTGGAAAATCAAGTTGGTTCCTGTCCCAGAAATTGTCACAGTTTTTCGAGTTGAGAGGACTTTAGAACAAGGTGCCACCGACATTGTTCATCAGTGGCAATATGTTGCTGATACAATTCATGAAGATCTTTTCATTAGGGCGGTTGTGATGCAATCGAATAAAAAGGGGCATCAGACAGTGAAAGCTAAATTTGTGGCATTGTTTCTAGGAAATGCAAAAAAACTTCATGCTTTGATGGATGAGAGCTTACCCCAATTGGGTTTGAAGCATGAGGATTATATTGAAATGAGTTGGATAGAATCTGTCTTGTATTGGTCTAATTACCCAATTGGAACTTCCACTGATGTCTTGCTTGAAAGACAACCATCATCAGAAAAATTTCTGAAGAAGAAATCTGATTACATCCAAGAACCAATGTCAAAGTCAGGTCTTGAAGAACTTTGGAAGAAAATGATGGAACTGAGAAAGCCAGTACTAACATTCAATCCTTATGGTGGAAAAATGAGGGAAATTTCAGAGCTTGAAACCCCATTTCCACATAGAGCTGGAAATGTGTACAAAATCCAGTACTCAGTGAATTGGAAAGAGGAGGGTGTGGAGGCTGCAGATAAAAACCTTGATCTGATAAGAAGGCTTTATGAGTTTATGACACCTTATGTGTCAAAGTCACCAAGGTGTTCATATCTCAATTACAGAGATGTTGATTTGGGTACCAATGGAAATGGCAATGCAAGCTACTCAGAAGCTAGTGTTTGGGGGACCAAGTACTTCAAGGGGAACTTTGACAGATTGGTACAAGTGAAGACTGCTGTAGATCCAGGAAACTTTTTTAGTTATGAACAAAGTATTCCATCTCTTACAGGTTGGGAAGGTAAAATGGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

518

Amino Acids

58.17

Weight (kDa)

6.69

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11010
malus_domestica MD05G1267500.v1.1
prunus_persica Prupe.4G098400_v2.0.a1
pyrus_communis pycom05g25050
rosa_chinensis RchiOBHm_Chr5g0017721
rosa_laevigata RLG00000032309
rosa_multiflora Rmu_sc0015477.1_g000001
rosa_roxburghii Rroxscaffold_1G00059770
rosa_rugosa Rorug05G0037500
rosa_wichuraiana Rw5G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 156
Acc65I GGTACC 1 cut(s) 1376
AccB1I GGYRCC 2 cut(s) 737, 1376
AciI CCGC 3 cut(s) 265, 273, 806
AclWI GGATC 3 cut(s) 339, 433, 1475
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 3 cut(s) 854, 1043, 1176
AcuI CTGAAG 1 cut(s) 1070
AfaI GTAC 6 cut(s) 1140, 1223, 1235, 1378, 1433, 1461
AfiI CCNNNNNNNGG 5 cut(s) 473, 474, 619, 923, 1160
AflIII ACRYGT 2 cut(s) 202, 330
AjnI CCWGG 1 cut(s) 1483
AjuI GAANNNNNNNTTGG 4 cut(s) 662, 694, 985, 1017
AleI CACNNNNGTG 2 cut(s) 492, 1339
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 3 cut(s) 339, 433, 1475
AoxI GGCC 2 cut(s) 274, 529
ApeKI GCWGC 2 cut(s) 5, 1268
ApoI RAATTY 3 cut(s) 854, 1043, 1176
Asp700I GAANNNNTTC 1 cut(s) 1044
Asp718I GGTACC 1 cut(s) 1376
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 1425
AsuHPI GGTGA 3 cut(s) 82, 416, 1326
AsuNHI GCTAGC 1 cut(s) 644
AvaII GGWCC 1 cut(s) 1425
BanI GGYRCC 2 cut(s) 737, 1376
BanII GRGCYC 1 cut(s) 294
BbsI GAAGAC 3 cut(s) 586, 615, 1475
BbvI GCAGC 2 cut(s) 17, 1255
BccI CCATC 6 cut(s) 131, 281, 895, 1039, 1114, 1525
BciT130I CCWGG 1 cut(s) 1485
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 3 cut(s) 645, 872, 1413
BfmI CTRYAG 3 cut(s) 84, 1269, 1476
BfuAI ACCTGC 1 cut(s) 156
BglII AGATCT 1 cut(s) 790
BisI GCNGC 3 cut(s) 6, 274, 1269
BlsI GCNGC 3 cut(s) 7, 275, 1270
BmcAI AGTACT 3 cut(s) 1140, 1235, 1433
Bme1390I CCNGG 1 cut(s) 1485
Bme18I GGWCC 1 cut(s) 1425
BmgT120I GGNCC 1 cut(s) 1425
BmiI GGNNCC 4 cut(s) 684, 739, 1378, 1426
BmrFI CCNGG 1 cut(s) 1485
BmsI GCATC 3 cut(s) 544, 804, 844
BmtI GCTAGC 1 cut(s) 648
BpiI GAAGAC 3 cut(s) 586, 615, 1475
BpmI CTGGAG 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 291, 511
BsaJI CCNNGG 2 cut(s) 442, 1337
Bsc4I CCNNNNNNNGG 5 cut(s) 473, 474, 619, 923, 1160
Bse1I ACTGG 2 cut(s) 1136, 1231
Bse3DI GCAATG 1 cut(s) 1399
BseBI CCWGG 1 cut(s) 1485
BseDI CCNNGG 2 cut(s) 442, 1337
BseGI GGATG 4 cut(s) 119, 213, 910, 1068
BseLI CCNNNNNNNGG 5 cut(s) 473, 474, 619, 923, 1160
BseMI GCAATG 1 cut(s) 1399
BseMII CTCAG 3 cut(s) 1118, 1251, 1419
BseNI ACTGG 2 cut(s) 1136, 1231
BseRI GAGGAG 1 cut(s) 1268
BseXI GCAGC 2 cut(s) 17, 1255
BshFI GGCC 2 cut(s) 276, 531
BshNI GGYRCC 2 cut(s) 737, 1376
BslFI GGGAC 2 cut(s) 674, 1438
BslI CCNNNNNNNGG 5 cut(s) 473, 474, 619, 923, 1160
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 2 cut(s) 674, 1438
BsnI GGCC 2 cut(s) 276, 531
Bsp1286I GDGCHC 1 cut(s) 294
Bsp1407I TGTACA 1 cut(s) 1221
Bsp143I GATC 5 cut(s) 344, 438, 790, 1285, 1480
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 3 cut(s) 265, 273, 806
BspANI GGCC 2 cut(s) 276, 531
BspCNI CTCAG 3 cut(s) 1119, 1250, 1418
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 4 cut(s) 684, 739, 1378, 1426
BspMAI CTGCAG 2 cut(s) 88, 1273
BspMI ACCTGC 1 cut(s) 156
BspOI GCTAGC 1 cut(s) 648
BspPI GGATC 3 cut(s) 339, 433, 1475
BspT107I GGYRCC 2 cut(s) 737, 1376
BsrDI GCAATG 1 cut(s) 1399
BsrGI TGTACA 1 cut(s) 1221
BsrI ACTGG 2 cut(s) 1136, 1231
BssECI CCNNGG 2 cut(s) 442, 1337
BssMI GATC 5 cut(s) 344, 438, 790, 1285, 1480
BssT1I CCWWGG 2 cut(s) 442, 1337
Bst2UI CCWGG 1 cut(s) 1485
Bst4CI ACNGT 4 cut(s) 183, 472, 706, 844
Bst6I CTCTTC 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 1221
BstC8I GCNNGC 2 cut(s) 646, 1399
BstDEI CTNAG 3 cut(s) 1127, 1237, 1405
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 4 cut(s) 119, 213, 910, 1068
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 5 cut(s) 347, 441, 793, 1288, 1483
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 5 cut(s) 344, 438, 790, 1285, 1480
BstMWI GCNNNNNNNGC 2 cut(s) 273, 1398
BstNI CCWGG 1 cut(s) 1485
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 1483
BstSFI CTRYAG 3 cut(s) 84, 1269, 1476
BstV1I GCAGC 2 cut(s) 17, 1255
BstV2I GAAGAC 3 cut(s) 586, 615, 1475
BstX2I RGATCY 4 cut(s) 344, 438, 790, 1480
BstYI RGATCY 4 cut(s) 344, 438, 790, 1480
BsuRI GGCC 2 cut(s) 276, 531
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 4 cut(s) 119, 213, 910, 1068
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 6 cut(s) 179, 274, 764, 849, 1005, 1245
BveI ACCTGC 1 cut(s) 156
Cac8I GCNNGC 2 cut(s) 646, 1399
CciI TCATGA 1 cut(s) 784
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 1425
Csp6I GTAC 6 cut(s) 1139, 1222, 1234, 1377, 1432, 1460
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 6 cut(s) 245, 331, 443, 785, 893, 935
CviQI GTAC 6 cut(s) 1139, 1222, 1234, 1377, 1432, 1460
DdeI CTNAG 3 cut(s) 1127, 1237, 1405
DpnI GATC 5 cut(s) 346, 440, 792, 1287, 1482
DpnII GATC 5 cut(s) 344, 438, 790, 1285, 1480
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 115
EarI CTCTTC 1 cut(s) 115
Eco130I CCWWGG 2 cut(s) 442, 1337
Eco24I GRGCYC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 1425
Eco57I CTGAAG 1 cut(s) 1070
EcoRII CCWGG 1 cut(s) 1483
EcoT14I CCWWGG 2 cut(s) 442, 1337
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 2 cut(s) 442, 1337
FaeI CATG 6 cut(s) 248, 334, 446, 788, 896, 938
FalI AAGNNNNNCTT 2 cut(s) 1430, 1462
FaqI GGGAC 2 cut(s) 674, 1438
FatI CATG 6 cut(s) 244, 330, 442, 784, 892, 934
Fnu4HI GCNGC 3 cut(s) 6, 274, 1269
FokI GGATG 4 cut(s) 106, 200, 917, 1055
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 3 cut(s) 6, 274, 1269
FspBI CTAG 3 cut(s) 645, 872, 1413
GlaI GCGC 1 cut(s) 152
GluI GCNGC 3 cut(s) 6, 274, 1269
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 2 cut(s) 276, 531
HhaI GCGC 1 cut(s) 153
Hin1II CATG 6 cut(s) 248, 334, 446, 788, 896, 938
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HindIII AAGCTT 1 cut(s) 219
HinfI GANTC 4 cut(s) 261, 386, 596, 965
HphI GGTGA 3 cut(s) 82, 416, 1326
Hpy166II GTNNAC 2 cut(s) 328, 1222
Hpy188I TCNGA 9 cut(s) 143, 260, 840, 1039, 1050, 1063, 1183, 1290, 1408
Hpy188III TCNNGA 3 cut(s) 390, 785, 1097
Hpy8I GTNNAC 2 cut(s) 328, 1222
HpyAV CCTTC 4 cut(s) 40, 260, 1290, 1529
HpyCH4III ACNGT 4 cut(s) 183, 472, 706, 844
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 6 cut(s) 86, 130, 817, 881, 1271, 1397
HpyF10VI GCNNNNNNNGC 2 cut(s) 273, 1398
HpyF3I CTNAG 3 cut(s) 1127, 1237, 1405
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 6 cut(s) 248, 334, 446, 788, 896, 938
HspAI GCGC 1 cut(s) 151
KpnI GGTACC 1 cut(s) 1380
Kzo9I GATC 5 cut(s) 344, 438, 790, 1285, 1480
LmnI GCTCC 3 cut(s) 239, 392, 641
Lsp1109I GCAGC 2 cut(s) 17, 1255
LweI GCATC 3 cut(s) 544, 804, 844
MaeI CTAG 3 cut(s) 645, 872, 1413
MaeII ACGT 1 cut(s) 204
MaeIII GTNAC 4 cut(s) 88, 190, 700, 1332
MalI GATC 5 cut(s) 346, 440, 792, 1287, 1482
MboI GATC 5 cut(s) 344, 438, 790, 1285, 1480
MfeI CAATTG 2 cut(s) 920, 993
MflI RGATCY 4 cut(s) 344, 438, 790, 1480
MhlI GDGCHC 1 cut(s) 294
MlyI GAGTC 1 cut(s) 605
MmeI TCCRAC 3 cut(s) 41, 460, 938
MroXI GAANNNNTTC 1 cut(s) 1044
MseI TTAA 2 cut(s) 341, 573
MslI CAYNNNNRTG 3 cut(s) 282, 492, 1339
MspA1I CMGCKG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 1485
MunI CAATTG 2 cut(s) 920, 993
MvaI CCWGG 1 cut(s) 1485
MwoI GCNNNNNNNGC 2 cut(s) 273, 1398
NcoI CCATGG 1 cut(s) 442
NdeII GATC 5 cut(s) 344, 438, 790, 1285, 1480
NheI GCTAGC 1 cut(s) 644
NlaIII CATG 6 cut(s) 248, 334, 446, 788, 896, 938
NlaIV GGNNCC 4 cut(s) 684, 739, 1378, 1426
NmuCI GTSAC 4 cut(s) 88, 190, 700, 1332
NspI RCATGY 1 cut(s) 334
OliI CACNNNNGTG 2 cut(s) 492, 1339
PagI TCATGA 1 cut(s) 784
PciI ACATGT 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 1044
PfeI GAWTC 3 cut(s) 261, 386, 965
PfoI TCCNGGA 1 cut(s) 1483
PkrI GCNGC 3 cut(s) 7, 275, 1270
PleI GAGTC 1 cut(s) 604
PpsI GAGTC 1 cut(s) 604
PscI ACATGT 1 cut(s) 330
Psp6I CCWGG 1 cut(s) 1483
PspGI CCWGG 1 cut(s) 1483
PspN4I GGNNCC 4 cut(s) 684, 739, 1378, 1426
PspPI GGNCC 1 cut(s) 1425
PstI CTGCAG 2 cut(s) 88, 1273
PsuI RGATCY 4 cut(s) 344, 438, 790, 1480
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 6 cut(s) 1140, 1223, 1235, 1378, 1433, 1461
RsaNI GTAC 6 cut(s) 1139, 1222, 1234, 1377, 1432, 1460
RseI CAYNNNNRTG 3 cut(s) 282, 492, 1339
SaqAI TTAA 2 cut(s) 341, 573
SatI GCNGC 3 cut(s) 6, 274, 1269
Sau3AI GATC 5 cut(s) 344, 438, 790, 1285, 1480
Sau96I GGNCC 1 cut(s) 1425
ScaI AGTACT 3 cut(s) 1140, 1235, 1433
SchI GAGTC 1 cut(s) 605
ScrFI CCNGG 1 cut(s) 1485
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 3 cut(s) 544, 804, 844
SfcI CTRYAG 3 cut(s) 84, 1269, 1476
SinI GGWCC 1 cut(s) 1425
SmiMI CAYNNNNRTG 3 cut(s) 282, 492, 1339
SmlI CTYRAG 2 cut(s) 306, 490
SmoI CTYRAG 2 cut(s) 306, 490
SsiI CCGC 3 cut(s) 265, 273, 806
SspI AATATT 1 cut(s) 65
SspMI CTAG 3 cut(s) 645, 872, 1413
StyD4I CCNGG 1 cut(s) 1483
StyI CCWWGG 2 cut(s) 442, 1337
TaaI ACNGT 4 cut(s) 183, 472, 706, 844
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 712, 821
TatI WGTACW 4 cut(s) 1138, 1221, 1233, 1431
TauI GCSGC 1 cut(s) 276
TfiI GAWTC 3 cut(s) 261, 386, 965
Tru1I TTAA 2 cut(s) 341, 573
Tru9I TTAA 2 cut(s) 341, 573
TscAI CASTG 6 cut(s) 186, 274, 764, 849, 1012, 1245
TseFI GTSAC 4 cut(s) 88, 190, 700, 1332
TseI GCWGC 2 cut(s) 5, 1268
Tsp45I GTSAC 4 cut(s) 88, 190, 700, 1332
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 6 cut(s) 186, 274, 764, 849, 1012, 1245
VpaK11BI GGWCC 1 cut(s) 1425
XapI RAATTY 3 cut(s) 854, 1043, 1176
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XmnI GAANNNNTTC 1 cut(s) 1044
XspI CTAG 3 cut(s) 645, 872, 1413
ZrmI AGTACT 3 cut(s) 1140, 1235, 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.