Rorug05G0037500

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018275
Physical Location & Seq
Reverse (-)
2800311 .. 2804303
3993 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0037500.1

Sequence Viewer

Length: 1116 bp
ATGGCGACTCAATTCCCGGACGATTTCAAGTGCCCGATTTCGCTGGAAATAATGTCCGACCCGGTTATACTTCCTTCGGGTCACACCTTCGACCGGCCCAACATCCAACGCTGGCTCGACGCCGGCCACCGTACTTGCCCACTTACCAAACTACCCCTCCCCGAACACCCCTCCCTCATCCCCAACCACGCCCTCCGCAGCTTGATTTCCAATTATACCCTTCCCTCCCCTGCACAATTACACAACACCCAGAGCCAGCCCAACCAGCAACCCCAAACCCTAATCGCGACCCTGACTTCGGCGGCGTCGAGCCTGGACTCGAAGCTCGAGTCGCTCGACCAGCTCAACCGCCTGTCGAAGCGGGACGCGGCGTTTCGCGCCAAGCTGACGGAGTCCGGCGCCGTCGCCGCCGTGCTGAAGTGCGTGGACTCCGACGAGCCGAGCCTGCAGGAGAAGGCTCTGACTCTGCTGCTGAATGTGAGCCTGGACGACGACAACAAGGTGGGTCTGGTGGCGGAAGGAGCGATTGCTAGAGTCGTGGCGGTGCTGCAAGGCGGCTCGCCGAACAGCCGGGCCGTGGCGGCGACGATGTTGACCAGCTTGGCCGTGGTGGAGGTCAACAAGGCCACAATCGGGTCGTACCCGTATGCAATTCGGGCTCTTGTTTCGCTCCTCAGGGACGGCAAGGGCCGGGAGAAGAAAGAGGCGGCGACGGCGCTCTATGCTATCTGTTCGTTTCCGGACAATCGGCGGCGGGCGGTGGAGTGCGGTGCGGTTTCGATTTTGATCCGAATTGCGGATTCGGGTTTGGAGCGGGCCGTTGAGGTTTTGGGCCTGTTGGCGAAAAGCAAGGATGGGAGAGAAGAGATGCAGAGGTTTAGTGGGTGTGTGAAGATTTTAGTGAGGGTTTTAGAGAACGGGAGCTCCAGGGGAATTCAGTATGCTCTGCTTACATTGAGTTCGCTTTGCCATTTCAGTGAGAAAATGTGTGTGGAAGCAAGAAAAGAAGGCGTCTTAGCGATTTGCGTTCGTTTGGTTGAAGATGATAATGAAAAGATTAGAAAAAATGCTTCTTATTTGATTCAGGTTCTGGATGGGAACCATTCCATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

371

Amino Acids

40.27

Weight (kDa)

8.04

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 6 - 72 2.5e-20 U-box domain
zf-RING_UBOX PF13445 11 - 47 1.9e-06 RING-type zinc-finger
ARM_PUB PF25598 105 - 367 1.3e-24 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 107 - 266 3.6e-07 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018275)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11010
malus_domestica MD05G1267500.v1.1
prunus_persica Prupe.4G098400_v2.0.a1
pyrus_communis pycom05g25050
rosa_chinensis RchiOBHm_Chr5g0017721
rosa_laevigata RLG00000032309
rosa_multiflora Rmu_sc0015477.1_g000001
rosa_roxburghii Rroxscaffold_1G00059770
rosa_rugosa Rorug05G0037500
rosa_wichuraiana Rw5G011380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AccBSI CCGCTC 1 cut(s) 814
AccII CGCG 3 cut(s) 287, 368, 378
AccIII TCCGGA 1 cut(s) 739
AclWI GGATC 1 cut(s) 781
AcoI YGGCCR 2 cut(s) 124, 603
AcsI RAATTY 1 cut(s) 933
AcuI CTGAAG 1 cut(s) 437
AcyI GRCGYC 4 cut(s) 120, 305, 399, 1011
AfaI GTAC 2 cut(s) 133, 641
AfiI CCNNNNNNNGG 5 cut(s) 93, 298, 577, 633, 796
AgsI TTSAA 2 cut(s) 28, 1040
AjnI CCWGG 3 cut(s) 312, 483, 926
AloI GAACNNNNNNTCC 2 cut(s) 908, 940
AluBI AGCT 6 cut(s) 201, 325, 343, 385, 600, 924
AluI AGCT 6 cut(s) 201, 325, 343, 385, 600, 924
Alw21I GWGCWC 1 cut(s) 926
AlwI GGATC 1 cut(s) 781
AlwNI CAGNNNCTG 1 cut(s) 1090
Ama87I CYCGRG 1 cut(s) 326
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 8 cut(s) 95, 124, 573, 603, 624, 688, 816, 832
ApeKI GCWGC 3 cut(s) 198, 469, 547
ApoI RAATTY 1 cut(s) 933
ArsI GACNNNNNNTTYG 4 cut(s) 280, 312, 314, 346
AspLEI GCGC 3 cut(s) 380, 401, 718
AspS9I GGNCC 5 cut(s) 96, 573, 688, 816, 832
AsuC2I CCSGG 4 cut(s) 17, 62, 572, 692
AvaI CYCGRG 1 cut(s) 326
AxyI CCTNAGG 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 2 cut(s) 661, 926
Bbv12I GWGCWC 1 cut(s) 926
BbvI GCAGC 3 cut(s) 210, 456, 534
BccI CCATC 2 cut(s) 848, 1088
BceAI ACGGC 7 cut(s) 386, 395, 560, 590, 697, 729, 803
BciT130I CCWGG 3 cut(s) 314, 485, 928
BcnI CCSGG 4 cut(s) 17, 62, 572, 692
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 446
BfoI RGCGCY 2 cut(s) 402, 719
BglI GCCNNNNNGGC 1 cut(s) 581
Bme1390I CCNGG 7 cut(s) 17, 62, 314, 485, 572, 692, 928
BmeT110I CYCGRG 1 cut(s) 326
BmgT120I GGNCC 5 cut(s) 96, 573, 688, 816, 832
BmiI GGNNCC 2 cut(s) 400, 1100
BmrFI CCNGG 7 cut(s) 17, 62, 314, 485, 572, 692, 928
BmsI GCATC 1 cut(s) 858
BpmI CTGGAG 1 cut(s) 910
BpuMI CCSGG 4 cut(s) 17, 62, 572, 692
BsaBI GATNNNNATC 1 cut(s) 785
BsaHI GRCGYC 4 cut(s) 120, 305, 399, 1011
BsaJI CCNNGG 3 cut(s) 576, 606, 927
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 908, 938
Bsc4I CCNNNNNNNGG 5 cut(s) 93, 298, 577, 633, 796
Bse118I RCCGGY 2 cut(s) 93, 122
Bse21I CCTNAGG 1 cut(s) 674
Bse8I GATNNNNATC 1 cut(s) 785
BseAI TCCGGA 1 cut(s) 739
BseBI CCWGG 3 cut(s) 314, 485, 928
BseDI CCNNGG 3 cut(s) 576, 606, 927
BseGI GGATG 4 cut(s) 102, 177, 859, 1099
BseJI GATNNNNATC 1 cut(s) 785
BseLI CCNNNNNNNGG 5 cut(s) 93, 298, 577, 633, 796
BseMII CTCAG 1 cut(s) 688
BseRI GAGGAG 1 cut(s) 662
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 3 cut(s) 210, 456, 534
BsgI GTGCAG 1 cut(s) 216
Bsh1236I CGCG 3 cut(s) 287, 368, 378
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 8 cut(s) 97, 126, 575, 605, 626, 690, 818, 834
BshNI GGYRCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 926
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 8 cut(s) 17, 62, 94, 123, 396, 571, 691, 740
BslFI GGGAC 2 cut(s) 377, 692
BslI CCNNNNNNNGG 5 cut(s) 93, 298, 577, 633, 796
BsmFI GGGAC 2 cut(s) 377, 692
BsnI GGCC 8 cut(s) 97, 126, 575, 605, 626, 690, 818, 834
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 3 cut(s) 35, 661, 926
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 1 cut(s) 786
Bsp68I TCGCGA 1 cut(s) 287
BspANI GGCC 8 cut(s) 97, 126, 575, 605, 626, 690, 818, 834
BspCNI CTCAG 1 cut(s) 687
BspEI TCCGGA 1 cut(s) 739
BspFNI CGCG 3 cut(s) 287, 368, 378
BspLI GGNNCC 2 cut(s) 400, 1100
BspMAI CTGCAG 1 cut(s) 450
BspPI GGATC 1 cut(s) 781
BspT107I GGYRCC 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 814
BsrFI RCCGGY 2 cut(s) 93, 122
BssAI RCCGGY 2 cut(s) 93, 122
BssECI CCNNGG 3 cut(s) 576, 606, 927
BssMI GATC 1 cut(s) 786
BssNI GRCGYC 4 cut(s) 120, 305, 399, 1011
Bst2UI CCWGG 3 cut(s) 314, 485, 928
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 858
BstACI GRCGYC 4 cut(s) 120, 305, 399, 1011
BstC8I GCNNGC 7 cut(s) 113, 124, 257, 446, 560, 756, 816
BstDEI CTNAG 2 cut(s) 674, 1015
BstDSI CCRYGG 2 cut(s) 576, 606
BstF5I GGATG 4 cut(s) 102, 177, 859, 1099
BstFNI CGCG 3 cut(s) 287, 368, 378
BstH2I RGCGCY 2 cut(s) 402, 719
BstHHI GCGC 3 cut(s) 380, 401, 718
BstKTI GATC 1 cut(s) 789
BstMBI GATC 1 cut(s) 786
BstMCI CGRYCG 1 cut(s) 94
BstNI CCWGG 3 cut(s) 314, 485, 928
BstSCI CCNGG 7 cut(s) 15, 60, 312, 483, 570, 690, 926
BstSFI CTRYAG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 3 cut(s) 287, 368, 378
BstV1I GCAGC 3 cut(s) 210, 456, 534
Bsu36I CCTNAGG 1 cut(s) 674
BsuRI GGCC 8 cut(s) 97, 126, 575, 605, 626, 690, 818, 834
BtgI CCRYGG 2 cut(s) 576, 606
BtsCI GGATG 4 cut(s) 102, 177, 859, 1099
BtsIMutI CAGTG 1 cut(s) 982
BtuMI TCGCGA 1 cut(s) 287
Cac8I GCNNGC 7 cut(s) 113, 124, 257, 446, 560, 756, 816
CaiI CAGNNNCTG 1 cut(s) 1090
CfoI GCGC 3 cut(s) 380, 401, 718
Cfr10I RCCGGY 2 cut(s) 93, 122
Cfr13I GGNCC 5 cut(s) 96, 573, 688, 816, 832
CseI GACGC 4 cut(s) 128, 294, 374, 1000
Csp6I GTAC 2 cut(s) 132, 640
CspCI CAANNNNNGTGG 2 cut(s) 116, 151
CviAII CATG 1 cut(s) 1108
CviQI GTAC 2 cut(s) 132, 640
DdeI CTNAG 2 cut(s) 674, 1015
DinI GGCGCC 1 cut(s) 400
DpnI GATC 1 cut(s) 788
DpnII GATC 1 cut(s) 786
EaeI YGGCCR 2 cut(s) 124, 603
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
EciI GGCGGA 1 cut(s) 530
Ecl136II GAGCTC 1 cut(s) 924
Eco24I GRGCYC 2 cut(s) 661, 926
Eco53kI GAGCTC 1 cut(s) 924
Eco57I CTGAAG 1 cut(s) 437
Eco81I CCTNAGG 1 cut(s) 674
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 924
EcoRI GAATTC 1 cut(s) 933
EcoRII CCWGG 3 cut(s) 312, 483, 926
EcoT38I GRGCYC 2 cut(s) 661, 926
EgeI GGCGCC 1 cut(s) 400
EheI GGCGCC 1 cut(s) 400
FaeI CATG 1 cut(s) 1111
FaiI YATR 6 cut(s) 68, 216, 648, 723, 942, 1109
FaqI GGGAC 2 cut(s) 377, 692
FatI CATG 1 cut(s) 1107
FauI CCCGC 3 cut(s) 354, 747, 807
FokI GGATG 4 cut(s) 89, 164, 866, 1106
FriOI GRGCYC 2 cut(s) 661, 926
FspBI CTAG 1 cut(s) 531
GlaI GCGC 3 cut(s) 379, 400, 717
GsuI CTGGAG 1 cut(s) 910
HaeII RGCGCY 2 cut(s) 402, 719
HaeIII GGCC 8 cut(s) 97, 126, 575, 605, 626, 690, 818, 834
HapII CCGG 8 cut(s) 17, 62, 94, 123, 396, 571, 691, 740
HgaI GACGC 4 cut(s) 128, 294, 374, 1000
HhaI GCGC 3 cut(s) 380, 401, 718
Hin1I GRCGYC 4 cut(s) 120, 305, 399, 1011
Hin1II CATG 1 cut(s) 1111
Hin6I GCGC 3 cut(s) 378, 399, 716
HinP1I GCGC 3 cut(s) 378, 399, 716
HincII GTYRAC 2 cut(s) 594, 619
HindII GTYRAC 2 cut(s) 594, 619
HinfI GANTC 9 cut(s) 7, 317, 329, 392, 428, 463, 534, 800, 1081
HpaII CCGG 8 cut(s) 17, 62, 94, 123, 396, 571, 691, 740
Hpy166II GTNNAC 3 cut(s) 427, 594, 619
Hpy188I TCNGA 4 cut(s) 58, 433, 462, 791
Hpy188III TCNNGA 3 cut(s) 286, 740, 1091
Hpy8I GTNNAC 3 cut(s) 427, 594, 619
Hpy99I CGWCG 7 cut(s) 122, 310, 407, 437, 494, 589, 715
HpyAV CCTTC 6 cut(s) 84, 97, 230, 448, 512, 1001
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 5 cut(s) 233, 448, 550, 650, 871
HpyF3I CTNAG 2 cut(s) 674, 1015
Hsp92I GRCGYC 4 cut(s) 120, 305, 399, 1011
Hsp92II CATG 1 cut(s) 1111
HspAI GCGC 3 cut(s) 378, 399, 716
KasI GGCGCC 1 cut(s) 398
Kpn2I TCCGGA 1 cut(s) 739
KroI GCCGGC 1 cut(s) 122
KroNI GCCGGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 786
LmnI GCTCC 5 cut(s) 521, 675, 811, 921, 929
Lsp1109I GCAGC 3 cut(s) 210, 456, 534
LweI GCATC 1 cut(s) 858
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 1 cut(s) 80
MalI GATC 1 cut(s) 788
MbiI CCGCTC 1 cut(s) 814
MboI GATC 1 cut(s) 786
MboII GAAGA 4 cut(s) 709, 875, 904, 1052
MhlI GDGCHC 3 cut(s) 35, 661, 926
MluCI AATT 6 cut(s) 11, 211, 236, 651, 792, 933
Mly113I GGCGCC 1 cut(s) 399
MlyI GAGTC 6 cut(s) 311, 338, 401, 422, 457, 543
MmeI TCCRAC 3 cut(s) 81, 130, 456
MroI TCCGGA 1 cut(s) 739
MroNI GCCGGC 1 cut(s) 122
MslI CAYNNNNRTG 1 cut(s) 975
MspI CCGG 8 cut(s) 17, 62, 94, 123, 396, 571, 691, 740
MspR9I CCNGG 7 cut(s) 17, 62, 314, 485, 572, 692, 928
MvaI CCWGG 3 cut(s) 314, 485, 928
MvnI CGCG 3 cut(s) 287, 368, 378
NaeI GCCGGC 1 cut(s) 124
NarI GGCGCC 1 cut(s) 399
NciI CCSGG 4 cut(s) 17, 62, 572, 692
NdeII GATC 1 cut(s) 786
NgoMIV GCCGGC 1 cut(s) 122
NlaIII CATG 1 cut(s) 1111
NlaIV GGNNCC 2 cut(s) 400, 1100
NmeAIII GCCGAG 1 cut(s) 465
NmuCI GTSAC 1 cut(s) 80
NruI TCGCGA 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 305, 333
PdiI GCCGGC 1 cut(s) 124
PfeI GAWTC 2 cut(s) 800, 1081
PflFI GACNNNGTC 1 cut(s) 391
PfoI TCCNGGA 1 cut(s) 15
PleI GAGTC 6 cut(s) 311, 337, 400, 422, 457, 542
PluTI GGCGCC 1 cut(s) 402
PpsI GAGTC 6 cut(s) 311, 337, 400, 422, 457, 542
Psp124BI GAGCTC 1 cut(s) 926
Psp6I CCWGG 3 cut(s) 312, 483, 926
PspGI CCWGG 3 cut(s) 312, 483, 926
PspN4I GGNNCC 2 cut(s) 400, 1100
PspPI GGNCC 5 cut(s) 96, 573, 688, 816, 832
PspXI VCTCGAGB 1 cut(s) 326
PstI CTGCAG 1 cut(s) 450
PstNI CAGNNNCTG 1 cut(s) 1090
PsyI GACNNNGTC 1 cut(s) 391
RruI TCGCGA 1 cut(s) 287
RsaI GTAC 2 cut(s) 133, 641
RsaNI GTAC 2 cut(s) 132, 640
RseI CAYNNNNRTG 1 cut(s) 975
SacI GAGCTC 1 cut(s) 926
Sau3AI GATC 1 cut(s) 786
Sau96I GGNCC 5 cut(s) 96, 573, 688, 816, 832
SbfI CCTGCAGG 1 cut(s) 450
SchI GAGTC 6 cut(s) 311, 338, 401, 422, 457, 543
ScrFI CCNGG 7 cut(s) 17, 62, 314, 485, 572, 692, 928
SdaI CCTGCAGG 1 cut(s) 450
SduI GDGCHC 3 cut(s) 35, 661, 926
SfaNI GCATC 1 cut(s) 858
SfcI CTRYAG 1 cut(s) 446
SfoI GGCGCC 1 cut(s) 400
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse8387I CCTGCAGG 1 cut(s) 450
Sse9I AATT 6 cut(s) 11, 211, 236, 651, 792, 933
SspDI GGCGCC 1 cut(s) 398
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 926
StyD4I CCNGG 7 cut(s) 15, 60, 312, 483, 570, 690, 926
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 8 cut(s) 90, 117, 308, 320, 327, 336, 356, 779
TasI AATT 6 cut(s) 11, 211, 236, 651, 792, 933
TauI GCSGC 7 cut(s) 305, 371, 410, 558, 584, 710, 754
TfiI GAWTC 2 cut(s) 800, 1081
TscAI CASTG 1 cut(s) 982
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 3 cut(s) 198, 469, 547
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 1065
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 982
Tth111I GACNNNGTC 1 cut(s) 391
XapI RAATTY 1 cut(s) 933
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XhoI CTCGAG 1 cut(s) 326
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.