FvH4_3g11920

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017159
Physical Location & Seq
Reverse (-)
7042427 .. 7044169
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11920.t1

Sequence Viewer

Length: 1431 bp
ATGAATCCCTTCTTTATCCTTTTGCTCATTGCATTCCTGAGTTTCAACCAAACCCTAGCCAGACAGAGGCCAATTAGCACTACATCCCTAGTACTTGGTATGAGGCATTCTAGGAGCTCCATTAGAAGTCCAGTATCCTCCTCTAACTCGAAGAAGATACCATCACAAGTCTTGGACTTGATGGAGCCACTGAGGGAAGTGAGAGATGGGTATCTGATATCTCTCAATTTGGGGACACCCCCACAAGTCATTCAAGTTTATATGGACACTGGTAGTGACCTTACTTGGGTTCCTTGTGGAAATCTCTCTTTTAGCTGCATGGATTGTGACGACTATAGAAACACTATACTAAACCCTACTTTCTCTCCTTCAGCTTCTTCTTCATCAGTTAGAGACCTATGTGGTAGCCCCTTTTGCACTGATATCCATAGCTCCGATAACCCTCTCGATCCATGCACCATTGCCGGTTGCTCACTCAGTACCCTGATTAAGGGAACTTGTCCTAGACCATGCCCTTCGTTTGCTTATACATATGGTGCGGGTGGGGTTGTCGTAGGAACCCTTAGTAGAGATACACTTAGGGTTCATGGAACTAGTAGTAGCCCAAGCAATGTCACTAGTGAAATTCCCAGTTTCTGTTTTGGGTGCATTGGTTCTACTTTTAGAGAACCAATTGGGATTGCAGGGTTTGGTCGGGGACCGCTTTCCCTCCCATCACAACTAGGGTTCCTACAGAAGGGCTTCTCTCACTGTTTCTTGGCCTTCAAGTACATGAACAATCCCAACATTTCAAGCCCTCTTGTTATAGGAGATGTTGCTATTTCTTCTAAACAAAATTTGCAATTCACTCCGATGTTGAAGAGTCCCATTTACCCGAATAACTACTATATTGGTTTGGAAGCTATCACGATAGGTAACAATAGTATTACACAAGTGCCCTTAAGCTTGAGAGAGTTTGATTCACAAGGTAATGGGGGCATGTTGATTGACTCAGGAACCACTTATACTCATCTCCCTGAGCCATTTTACTCAGACGTTCTTTCAGTTCTCCAGTCATTGATAACATATCCTAGAGCCAAGGAGATGGAGATGAAGACTTCTTTTGATCTTTGTTATAAAGTTCCATACACAACCAATGCTTTCACAGATGAACTCTTTCCTTCAATCACTTTCCATTTCTTGAACAATGTAAGCCTTGGTTTGCCTCAAGGCAATCACTTCTATGCTATGGGAGCTCCAATCAACTCCACTGTGGTGAAATGCTTGTTGTTCCAAACCATGGATGATGGCGATTATGGGCCGGCCGGAGTGTTTGGGAGCTTCCAGCAACAAAATGTGGAGGTCGTGTATGACTTGCAGAAGGATAGAATTGGGTTTCAAGCAATGGACTGTGCTTCAGCTGCAGCCTCTCAAGGACTTCACAAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N TRAM_LAG1_CLN8

Protein Analysis

477

Amino Acids

51.84

Weight (kDa)

6.06

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 71 - 271 4.3e-30 Xylanase inhibitor N-terminal
Asp PF00026 71 - 130 4.1e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 294 - 460 1.7e-29 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45120
fragaria_vesca FvH4_3g11920
malus_domestica MD05G1256600.v1.1 MD10G1237100.v1.1
prunus_persica Prupe.4G107200_v2.0.a1
pyrus_communis pycom05g23590
rosa_chinensis RchiOBHm_Chr5g0019451
rosa_laevigata RLG00000032444
rosa_roxburghii Rroxscaffold_1G00058610
rosa_rugosa Rorug05G0051000
rosa_samantha Rh5BG140300 Rh5CG152000 Rh5DG140800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1116
AccB7I CCANNNNNTGG 1 cut(s) 1279
AciI CCGC 2 cut(s) 539, 701
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 1302
AcsI RAATTY 2 cut(s) 624, 835
AcuI CTGAAG 2 cut(s) 354, 1380
AfaI GTAC 3 cut(s) 93, 481, 770
AfiI CCNNNNNNNGG 5 cut(s) 66, 286, 490, 736, 1279
AflII CTTAAG 1 cut(s) 940
AgsI TTSAA 8 cut(s) 46, 254, 766, 792, 859, 1164, 1183, 1379
AhlI ACTAGT 2 cut(s) 593, 617
AleI CACNNNNGTG 1 cut(s) 1253
AluBI AGCT 9 cut(s) 117, 315, 374, 432, 902, 945, 1235, 1320, 1400
AluI AGCT 9 cut(s) 117, 315, 374, 432, 902, 945, 1235, 1320, 1400
Alw21I GWGCWC 2 cut(s) 119, 1237
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 1 cut(s) 443
AlwNI CAGNNNCTG 1 cut(s) 636
AoxI GGCC 4 cut(s) 68, 759, 1298, 1302
ApeKI GCWGC 3 cut(s) 315, 1400, 1403
ApoI RAATTY 2 cut(s) 624, 835
Asp700I GAANNNNTTC 3 cut(s) 8, 740, 1155
AspS9I GGNCC 2 cut(s) 698, 1298
AsuHPI GGTGA 1 cut(s) 1267
AvaII GGWCC 1 cut(s) 698
BaeGI GKGCMC 1 cut(s) 939
BanII GRGCYC 2 cut(s) 119, 1237
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 2 cut(s) 119, 1237
BbvI GCAGC 3 cut(s) 302, 1387, 1415
BccI CCATC 6 cut(s) 169, 175, 200, 721, 1078, 1280
BciVI GTATCC 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 387
BcuI ACTAGT 2 cut(s) 593, 617
BfaI CTAG 8 cut(s) 56, 89, 111, 504, 594, 618, 722, 1071
BfmI CTRYAG 3 cut(s) 334, 731, 1401
BfrI CTTAAG 1 cut(s) 940
BfuI GTATCC 1 cut(s) 145
BisI GCNGC 3 cut(s) 316, 1401, 1404
BlsI GCNGC 3 cut(s) 317, 1402, 1405
BmcAI AGTACT 1 cut(s) 93
Bme18I GGWCC 1 cut(s) 698
BmgT120I GGNCC 2 cut(s) 698, 1298
BmiI GGNNCC 6 cut(s) 186, 291, 559, 699, 728, 997
BmrI ACTGGG 1 cut(s) 624
BmuI ACTGGG 1 cut(s) 624
BpiI GAAGAC 1 cut(s) 1100
BpmI CTGGAG 1 cut(s) 1034
Bpu10I CCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 3 cut(s) 967, 1191, 1395
BsaBI GATNNNNATC 1 cut(s) 210
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 1077, 1195, 1278
BsaXI ACNNNNNCTCC 4 cut(s) 349, 379, 1331, 1361
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 286, 490, 736, 1279
Bse118I RCCGGY 2 cut(s) 464, 1300
Bse1I ACTGG 4 cut(s) 131, 274, 630, 1051
Bse3DI GCAATG 4 cut(s) 27, 459, 616, 1389
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 1077, 1195, 1278
BseGI GGATG 2 cut(s) 83, 1288
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 5 cut(s) 66, 286, 490, 736, 1279
BseMI GCAATG 4 cut(s) 27, 459, 616, 1389
BseMII CTCAG 6 cut(s) 29, 182, 490, 1005, 1008, 1044
BseNI ACTGG 4 cut(s) 131, 274, 630, 1051
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 939
BseX3I CGGCCG 1 cut(s) 1302
BseXI GCAGC 3 cut(s) 302, 1387, 1415
Bsh1285I CGRYCG 1 cut(s) 1305
BshFI GGCC 4 cut(s) 70, 761, 1300, 1304
BsiEI CGRYCG 1 cut(s) 1305
BsiHKAI GWGCWC 2 cut(s) 119, 1237
BsiSI CCGG 3 cut(s) 465, 1301, 1305
BslFI GGGAC 3 cut(s) 247, 711, 849
BslI CCNNNNNNNGG 5 cut(s) 66, 286, 490, 736, 1279
BsmAI GTCTC 1 cut(s) 387
BsmFI GGGAC 3 cut(s) 247, 711, 849
BsmI GAATGC 2 cut(s) 32, 106
BsnI GGCC 4 cut(s) 70, 761, 1300, 1304
Bso31I GGTCTC 1 cut(s) 387
Bsp1286I GDGCHC 3 cut(s) 119, 939, 1237
Bsp143I GATC 2 cut(s) 448, 1105
Bsp19I CCATGG 1 cut(s) 1278
BspACI CCGC 2 cut(s) 539, 701
BspANI GGCC 4 cut(s) 70, 761, 1300, 1304
BspCNI CTCAG 6 cut(s) 30, 183, 489, 1004, 1009, 1043
BspLI GGNNCC 6 cut(s) 186, 291, 559, 699, 728, 997
BspMAI CTGCAG 1 cut(s) 1405
BspPI GGATC 1 cut(s) 443
BspTI CTTAAG 1 cut(s) 940
BspTNI GGTCTC 1 cut(s) 387
BsrDI GCAATG 4 cut(s) 27, 459, 616, 1389
BsrFI RCCGGY 2 cut(s) 464, 1300
BsrI ACTGG 4 cut(s) 131, 274, 630, 1051
BssAI RCCGGY 2 cut(s) 464, 1300
BssECI CCNNGG 3 cut(s) 1077, 1195, 1278
BssMI GATC 2 cut(s) 448, 1105
BssT1I CCWWGG 3 cut(s) 1077, 1195, 1278
Bst4CI ACNGT 3 cut(s) 752, 1252, 1391
Bst6I CTCTTC 1 cut(s) 854
BstAFI CTTAAG 1 cut(s) 940
BstC8I GCNNGC 1 cut(s) 1302
BstDEI CTNAG 8 cut(s) 38, 191, 476, 563, 578, 991, 1017, 1030
BstDSI CCRYGG 1 cut(s) 1278
BstENI CCTNNNNNAGG 2 cut(s) 488, 734
BstF5I GGATG 2 cut(s) 83, 1288
BstKTI GATC 2 cut(s) 451, 1108
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 2 cut(s) 448, 1105
BstMCI CGRYCG 1 cut(s) 1305
BstMWI GCNNNNNNNGC 3 cut(s) 414, 1232, 1400
BstNSI RCATGY 1 cut(s) 982
BstSFI CTRYAG 3 cut(s) 334, 731, 1401
BstSLI GKGCMC 1 cut(s) 939
BstV1I GCAGC 3 cut(s) 302, 1387, 1415
BstV2I GAAGAC 1 cut(s) 1100
BstXI CCANNNNNNTGG 1 cut(s) 1084
BstZI CGGCCG 1 cut(s) 1302
BsuI GTATCC 1 cut(s) 145
BsuRI GGCC 4 cut(s) 70, 761, 1300, 1304
BtgI CCRYGG 1 cut(s) 1278
BtsCI GGATG 2 cut(s) 83, 1288
BtsIMutI CAGTG 5 cut(s) 188, 267, 417, 748, 1248
Cac8I GCNNGC 1 cut(s) 1302
CaiI CAGNNNCTG 1 cut(s) 636
Cfr10I RCCGGY 2 cut(s) 464, 1300
Cfr13I GGNCC 2 cut(s) 698, 1298
Csp6I GTAC 3 cut(s) 92, 480, 769
CviAII CATG 7 cut(s) 319, 453, 510, 587, 772, 979, 1279
CviQI GTAC 3 cut(s) 92, 480, 769
DdeI CTNAG 8 cut(s) 38, 191, 476, 563, 578, 991, 1017, 1030
DpnI GATC 2 cut(s) 450, 1107
DpnII GATC 2 cut(s) 448, 1105
EaeI YGGCCR 1 cut(s) 1302
EagI CGGCCG 1 cut(s) 1302
Eam1104I CTCTTC 1 cut(s) 854
EarI CTCTTC 1 cut(s) 854
Ecl136II GAGCTC 2 cut(s) 117, 1235
EclXI CGGCCG 1 cut(s) 1302
Eco130I CCWWGG 3 cut(s) 1077, 1195, 1278
Eco24I GRGCYC 2 cut(s) 119, 1237
Eco31I GGTCTC 1 cut(s) 387
Eco32I GATATC 2 cut(s) 219, 424
Eco47I GGWCC 1 cut(s) 698
Eco52I CGGCCG 1 cut(s) 1302
Eco53kI GAGCTC 2 cut(s) 117, 1235
Eco57I CTGAAG 2 cut(s) 354, 1380
EcoICRI GAGCTC 2 cut(s) 117, 1235
EcoNI CCTNNNNNAGG 2 cut(s) 488, 734
EcoRV GATATC 2 cut(s) 219, 424
EcoT14I CCWWGG 3 cut(s) 1077, 1195, 1278
EcoT38I GRGCYC 2 cut(s) 119, 1237
ErhI CCWWGG 3 cut(s) 1077, 1195, 1278
FaeI CATG 7 cut(s) 322, 456, 513, 590, 775, 982, 1282
FaqI GGGAC 3 cut(s) 247, 711, 849
FatI CATG 7 cut(s) 318, 452, 509, 586, 771, 978, 1278
FauI CCCGC 1 cut(s) 532
FauNDI CATATG 1 cut(s) 532
Fnu4HI GCNGC 3 cut(s) 316, 1401, 1404
FokI GGATG 2 cut(s) 70, 1295
FriOI GRGCYC 2 cut(s) 119, 1237
FseI GGCCGGCC 1 cut(s) 1304
Fsp4HI GCNGC 3 cut(s) 316, 1401, 1404
FspBI CTAG 8 cut(s) 56, 89, 111, 504, 594, 618, 722, 1071
GluI GCNGC 3 cut(s) 316, 1401, 1404
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 4 cut(s) 70, 761, 1300, 1304
HapII CCGG 3 cut(s) 465, 1301, 1305
Hin1II CATG 7 cut(s) 322, 456, 513, 590, 775, 982, 1282
HindIII AAGCTT 1 cut(s) 943
HinfI GANTC 4 cut(s) 4, 862, 959, 989
HpaII CCGG 3 cut(s) 465, 1301, 1305
HphI GGTGA 1 cut(s) 1267
Hpy188I TCNGA 4 cut(s) 216, 436, 852, 1033
Hpy188III TCNNGA 5 cut(s) 37, 446, 907, 993, 1180
HpyAV CCTTC 7 cut(s) 19, 378, 525, 730, 772, 1170, 1354
HpyCH4III ACNGT 3 cut(s) 752, 1252, 1391
HpyCH4IV ACGT 1 cut(s) 1035
HpyCH4V TGCA 9 cut(s) 32, 318, 417, 456, 648, 683, 841, 1357, 1403
HpyF10VI GCNNNNNNNGC 3 cut(s) 414, 1232, 1400
HpyF3I CTNAG 8 cut(s) 38, 191, 476, 563, 578, 991, 1017, 1030
HpySE526I ACGT 1 cut(s) 1035
Hsp92II CATG 7 cut(s) 322, 456, 513, 590, 775, 982, 1282
KroI GCCGGC 1 cut(s) 1300
KroNI GCCGGC 1 cut(s) 1302
Kzo9I GATC 2 cut(s) 448, 1105
LmnI GCTCC 7 cut(s) 114, 122, 184, 437, 1232, 1240, 1317
Lsp1109I GCAGC 3 cut(s) 302, 1387, 1415
MaeI CTAG 8 cut(s) 56, 89, 111, 504, 594, 618, 722, 1071
MaeII ACGT 1 cut(s) 1035
MaeIII GTNAC 4 cut(s) 275, 326, 613, 914
MalI GATC 2 cut(s) 450, 1107
MboI GATC 2 cut(s) 448, 1105
MboII GAAGA 7 cut(s) 163, 166, 369, 372, 816, 871, 1105
MfeI CAATTG 1 cut(s) 672
MhlI GDGCHC 3 cut(s) 119, 939, 1237
MluCI AATT 7 cut(s) 72, 226, 624, 672, 835, 842, 1368
MlyI GAGTC 2 cut(s) 871, 983
MroNI GCCGGC 1 cut(s) 1300
MroXI GAANNNNTTC 3 cut(s) 8, 740, 1155
MseI TTAA 2 cut(s) 489, 941
MslI CAYNNNNRTG 3 cut(s) 851, 1221, 1253
MspA1I CMGCKG 1 cut(s) 1400
MspCI CTTAAG 1 cut(s) 940
MspI CCGG 3 cut(s) 465, 1301, 1305
MunI CAATTG 1 cut(s) 672
Mva1269I GAATGC 2 cut(s) 32, 106
MwoI GCNNNNNNNGC 3 cut(s) 414, 1232, 1400
NaeI GCCGGC 1 cut(s) 1302
NcoI CCATGG 1 cut(s) 1278
NdeI CATATG 1 cut(s) 532
NdeII GATC 2 cut(s) 448, 1105
NgoMIV GCCGGC 1 cut(s) 1300
NlaIII CATG 7 cut(s) 322, 456, 513, 590, 775, 982, 1282
NlaIV GGNNCC 6 cut(s) 186, 291, 559, 699, 728, 997
NmuCI GTSAC 3 cut(s) 275, 326, 613
NspI RCATGY 1 cut(s) 982
OliI CACNNNNGTG 1 cut(s) 1253
PctI GAATGC 2 cut(s) 32, 106
PdiI GCCGGC 1 cut(s) 1302
PdmI GAANNNNTTC 3 cut(s) 8, 740, 1155
PfeI GAWTC 2 cut(s) 4, 959
PflMI CCANNNNNTGG 1 cut(s) 1279
PkrI GCNGC 3 cut(s) 317, 1402, 1405
PleI GAGTC 2 cut(s) 870, 983
PpsI GAGTC 2 cut(s) 870, 983
PsiI TTATAA 1 cut(s) 1116
Psp124BI GAGCTC 2 cut(s) 119, 1237
PspN4I GGNNCC 6 cut(s) 186, 291, 559, 699, 728, 997
PspPI GGNCC 2 cut(s) 698, 1298
PsrI GAACNNNNNNTAC 2 cut(s) 988, 1020
PstI CTGCAG 1 cut(s) 1405
PstNI CAGNNNCTG 1 cut(s) 636
PvuII CAGCTG 1 cut(s) 1400
RigI GGCCGGCC 1 cut(s) 1304
RsaI GTAC 3 cut(s) 93, 481, 770
RsaNI GTAC 3 cut(s) 92, 480, 769
RseI CAYNNNNRTG 3 cut(s) 851, 1221, 1253
SacI GAGCTC 2 cut(s) 119, 1237
SaqAI TTAA 2 cut(s) 489, 941
SatI GCNGC 3 cut(s) 316, 1401, 1404
Sau3AI GATC 2 cut(s) 448, 1105
Sau96I GGNCC 2 cut(s) 698, 1298
ScaI AGTACT 1 cut(s) 93
SchI GAGTC 2 cut(s) 871, 983
SduI GDGCHC 3 cut(s) 119, 939, 1237
SfcI CTRYAG 3 cut(s) 334, 731, 1401
SinI GGWCC 1 cut(s) 698
SmiMI CAYNNNNRTG 3 cut(s) 851, 1221, 1253
SmlI CTYRAG 4 cut(s) 940, 946, 1206, 1410
SmoI CTYRAG 4 cut(s) 940, 946, 1206, 1410
SpeI ACTAGT 2 cut(s) 593, 617
Sse9I AATT 7 cut(s) 72, 226, 624, 672, 835, 842, 1368
SsiI CCGC 2 cut(s) 539, 701
SspMI CTAG 8 cut(s) 56, 89, 111, 504, 594, 618, 722, 1071
SstI GAGCTC 2 cut(s) 119, 1237
StyI CCWWGG 3 cut(s) 1077, 1195, 1278
TaaI ACNGT 3 cut(s) 752, 1252, 1391
TaiI ACGT 1 cut(s) 1038
TaqI TCGA 2 cut(s) 149, 447
TasI AATT 7 cut(s) 72, 226, 624, 672, 835, 842, 1368
TatI WGTACW 2 cut(s) 91, 768
TfiI GAWTC 2 cut(s) 4, 959
Tru1I TTAA 2 cut(s) 489, 941
Tru9I TTAA 2 cut(s) 489, 941
TscAI CASTG 5 cut(s) 195, 274, 424, 755, 1255
TseFI GTSAC 3 cut(s) 275, 326, 613
TseI GCWGC 3 cut(s) 315, 1400, 1403
Tsp45I GTSAC 3 cut(s) 275, 326, 613
TspDTI ATGAA 6 cut(s) 17, 372, 575, 788, 1106, 1164
TspRI CASTG 5 cut(s) 195, 274, 424, 755, 1255
Van91I CCANNNNNTGG 1 cut(s) 1279
Vha464I CTTAAG 1 cut(s) 940
VpaK11BI GGWCC 1 cut(s) 698
XagI CCTNNNNNAGG 2 cut(s) 488, 734
XapI RAATTY 2 cut(s) 624, 835
XceI RCATGY 1 cut(s) 982
XmnI GAANNNNTTC 3 cut(s) 8, 740, 1155
XspI CTAG 8 cut(s) 56, 89, 111, 504, 594, 618, 722, 1071
ZrmI AGTACT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.