MD10G1237100.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0017159
Physical Location & Seq
Forward (+)
33336118 .. 33337581
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1237100.v1.1.491

Sequence Viewer

Length: 1464 bp
ATGGCAACACCCCTCACCACTACCTTCCTTTTCCTTCTAACCGTTGCAACATTCTTCAATTTCAACCAAACCCTAGCCAGCCATAGCTCCAGTTCTACTTCCCTGGTGCTTGGACTAACACATTCTCAGGTTTCCCTTCCAAGCCCGAAAGCATCTTCTTACTCGAAAAAGATGCCATCACAAGTGTCAGACATGGTAGAGCCATTGAGGGAAGTGAGAGATGGGTATTTGATATCTCTTAGTTTAGGGACACCCCCACAAGTCACTCAAGTATATATGGATACTGGGAGTGACCTAACATGGGTTCCTTGTGGCAATCTTTCTTTTGTTTGCATAGATTGTGATGACTATAGGAACAACAACCTAATGCCCACTTTCTCCCCTTCAGCTTCTTCTTCGTCTCTTAGAGACCTTTGTGGTAGCTCCTTTTGCATTGACATCCATAGCTCAGATAACTCTATCGATCCATGCACCATTGTTGGATGCTCGCTTGCTACCCTTCTTAGGGACACATGTCCTAGACCATGCCCTTCATTTGCTTACACTTATGGCGCAGGTGGGGTTGTCCAAGGGACACTTAGTAGAGACACACTAAGGGTTCATGGAATTAGTACTACCCCCAACAATATTGTCACTATGGAAATTCCCAAGTTTTGTTTTGGGTGCATCGGGTCTACCTATAGAGAGCCTATTGGGATTGCAGGGTTTGGTAGGGGAGCGCTTTCCCTCCCATCCCAGTTAGGGTTTCTACATAAGGGCTTCTCTCATTGCTTCTTGGCTTTCAAGTATGCAAACAACCCTAATGTTTCAAGTCCACTAGTTGTAGGAGATGTTGCTATTTCTTCCAAAGAAAACTTGCAATTCACTCCAATGTTGAAGAGTCCCATGTACCCTAACAACTACTACATTGGTATAGAGGCCATCACAATAGGTAATGCCAGTGCAGTAACACAAGTGCCCTCAAGCTTGAGAGAATTTGATTCACAAGGAAATGGGGGTTTGCTGATTGACTCAGGAACCACTTACACTCATTTTCCTGAGCCATTATACTCCAATCTTCTCTCCGTTCTCGAGTCGGTGATTTCGTATCCTAGAGCCAAGGAAATGGAGACAAAGACCTCTTTTGATCTTTGTTATTTAGTCCCATACACAATGAATAATACTATCACAAATCAGGATGACCTACAATTTCCTCCAATAACTTTCCACTTCTTGAATAATGTGAGTCTTGCTTTGCCCCAAGGAAATCACTTCTATGCCATGGGAGCTCCAGTAAACTCGAGTGTGGTGAAATGCTTGTTGTTCCAAACAATGGATGATGGAGATTACGGGCCAGCCGGGGTTTTCGGTAGCTTCCAGCAGCAAAATGTGGAGGTTGTGTATGACTTGGCGAAAGAGAGAATTGGGTTTCAGGCAATGGATTGTGCTTCAGCTGCAGCCTCTCAAGGACTTCACAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N TRAM_LAG1_CLN8

Protein Analysis

488

Amino Acids

52.74

Weight (kDa)

5.32

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 76 - 277 3.4e-28 Xylanase inhibitor N-terminal
Asp PF00026 76 - 143 1.1e-07 Eukaryotic aspartyl protease
TAXi_C PF14541 300 - 471 3e-27 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45120
fragaria_vesca FvH4_3g11920
malus_domestica MD05G1256600.v1.1 MD10G1237100.v1.1
prunus_persica Prupe.4G107200_v2.0.a1
pyrus_communis pycom05g23590
rosa_chinensis RchiOBHm_Chr5g0019451
rosa_laevigata RLG00000032444
rosa_roxburghii Rroxscaffold_1G00058610
rosa_rugosa Rorug05G0051000
rosa_samantha Rh5BG140300 Rh5CG152000 Rh5DG140800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 545
AccB7I CCANNNNNTGG 1 cut(s) 1312
AccI GTMKAC 1 cut(s) 674
AclWI GGATC 1 cut(s) 458
AcsI RAATTY 2 cut(s) 642, 974
AcuI CTGAAG 2 cut(s) 369, 1413
AfaI GTAC 2 cut(s) 613, 890
AfeI AGCGCT 1 cut(s) 720
AfiI CCNNNNNNNGG 5 cut(s) 301, 504, 505, 741, 1312
AflIII ACRYGT 1 cut(s) 512
AgsI TTSAA 6 cut(s) 58, 64, 784, 810, 877, 1216
AhlI ACTAGT 1 cut(s) 817
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 8 cut(s) 87, 389, 423, 447, 966, 1268, 1353, 1433
AluI AGCT 8 cut(s) 87, 389, 423, 447, 966, 1268, 1353, 1433
Alw21I GWGCWC 1 cut(s) 1270
Alw26I GTCTC 4 cut(s) 402, 405, 579, 1103
AlwI GGATC 1 cut(s) 458
Ama87I CYCGRG 2 cut(s) 1070, 1279
Aor51HI AGCGCT 1 cut(s) 720
AoxI GGCC 2 cut(s) 918, 1331
ApeKI GCWGC 3 cut(s) 1360, 1433, 1436
ApoI RAATTY 2 cut(s) 642, 974
AspLEI GCGC 2 cut(s) 554, 721
AspS9I GGNCC 1 cut(s) 1331
AsuC2I CCSGG 1 cut(s) 1339
AsuHPI GGTGA 3 cut(s) 7, 1090, 1300
AvaI CYCGRG 2 cut(s) 1070, 1279
BaeGI GKGCMC 1 cut(s) 960
BanII GRGCYC 1 cut(s) 1270
Bbv12I GWGCWC 1 cut(s) 1270
BbvI GCAGC 3 cut(s) 1372, 1420, 1448
BccI CCATC 5 cut(s) 184, 215, 739, 929, 1313
BcgI CGANNNNNNTGC 2 cut(s) 154, 188
BciT130I CCWGG 1 cut(s) 104
BciVI GTATCC 2 cut(s) 274, 1098
BcnI CCSGG 1 cut(s) 1339
BcoDI GTCTC 4 cut(s) 402, 405, 579, 1103
BcuI ACTAGT 1 cut(s) 817
BfaI CTAG 4 cut(s) 74, 519, 818, 1092
BfmI CTRYAG 3 cut(s) 349, 679, 1434
BfoI RGCGCY 1 cut(s) 722
BfuAI ACCTGC 1 cut(s) 545
BfuI GTATCC 2 cut(s) 274, 1098
BisI GCNGC 3 cut(s) 1361, 1434, 1437
BlsI GCNGC 3 cut(s) 1362, 1435, 1438
BmcAI AGTACT 1 cut(s) 613
Bme1390I CCNGG 2 cut(s) 104, 1339
BmeT110I CYCGRG 2 cut(s) 1070, 1279
BmgT120I GGNCC 1 cut(s) 1331
BmiI GGNNCC 2 cut(s) 306, 1018
BmrFI CCNGG 2 cut(s) 104, 1339
BmrI ACTGGG 2 cut(s) 294, 730
BmsI GCATC 4 cut(s) 161, 162, 473, 675
BmuI ACTGGG 2 cut(s) 294, 730
BoxI GACNNNNGTC 1 cut(s) 513
BpmI CTGGAG 2 cut(s) 73, 1254
Bpu10I CCTNAGC 1 cut(s) 1038
BpuEI CTTGAG 4 cut(s) 252, 946, 988, 1428
BpuMI CCSGG 1 cut(s) 1339
Bsa29I ATCGAT 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 402
BsaJI CCNNGG 6 cut(s) 102, 568, 1098, 1240, 1260, 1338
BsaXI ACNNNNNCTCC 4 cut(s) 1257, 1287, 1364, 1394
Bsc4I CCNNNNNNNGG 5 cut(s) 301, 504, 505, 741, 1312
Bse1I ACTGG 5 cut(s) 90, 289, 736, 939, 1271
Bse3DI GCAATG 2 cut(s) 766, 1422
BseBI CCWGG 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 462
BseDI CCNNGG 6 cut(s) 102, 568, 1098, 1240, 1260, 1338
BseGI GGATG 5 cut(s) 438, 488, 731, 1183, 1321
BseLI CCNNNNNNNGG 5 cut(s) 301, 504, 505, 741, 1312
BseMI GCAATG 2 cut(s) 766, 1422
BseMII CTCAG 4 cut(s) 140, 462, 1026, 1029
BseNI ACTGG 5 cut(s) 90, 289, 736, 939, 1271
BseSI GKGCMC 1 cut(s) 960
BseXI GCAGC 3 cut(s) 1372, 1420, 1448
BsgI GTGCAG 1 cut(s) 963
BshFI GGCC 2 cut(s) 920, 1333
BshVI ATCGAT 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 1270
BsiHKCI CYCGRG 2 cut(s) 1070, 1279
BsiSI CCGG 1 cut(s) 1338
BslFI GGGAC 5 cut(s) 262, 521, 586, 867, 1127
BslI CCNNNNNNNGG 5 cut(s) 301, 504, 505, 741, 1312
BsmAI GTCTC 4 cut(s) 402, 405, 579, 1103
BsmBI CGTCTC 1 cut(s) 405
BsmFI GGGAC 5 cut(s) 262, 521, 586, 867, 1127
BsnI GGCC 2 cut(s) 920, 1333
Bso31I GGTCTC 1 cut(s) 402
BsoBI CYCGRG 2 cut(s) 1070, 1279
Bsp1286I GDGCHC 2 cut(s) 960, 1270
Bsp143I GATC 2 cut(s) 463, 1126
Bsp19I CCATGG 1 cut(s) 1260
BspANI GGCC 2 cut(s) 920, 1333
BspCNI CTCAG 4 cut(s) 139, 461, 1025, 1030
BspDI ATCGAT 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 306, 1018
BspMAI CTGCAG 1 cut(s) 1438
BspMI ACCTGC 1 cut(s) 545
BspPI GGATC 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 402
BsrDI GCAATG 2 cut(s) 766, 1422
BsrI ACTGG 5 cut(s) 90, 289, 736, 939, 1271
BssECI CCNNGG 6 cut(s) 102, 568, 1098, 1240, 1260, 1338
BssMI GATC 2 cut(s) 463, 1126
BssT1I CCWWGG 4 cut(s) 568, 1098, 1240, 1260
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 43
Bst6I CTCTTC 1 cut(s) 872
BstC8I GCNNGC 4 cut(s) 79, 488, 492, 1335
BstDEI CTNAG 9 cut(s) 126, 239, 404, 448, 503, 578, 593, 1012, 1038
BstDSI CCRYGG 1 cut(s) 1260
BstF5I GGATG 5 cut(s) 438, 488, 731, 1183, 1321
BstH2I RGCGCY 1 cut(s) 722
BstHHI GCGC 2 cut(s) 554, 721
BstKTI GATC 2 cut(s) 466, 1129
BstMAI GTCTC 4 cut(s) 402, 405, 579, 1103
BstMBI GATC 2 cut(s) 463, 1126
BstMWI GCNNNNNNNGC 3 cut(s) 429, 1265, 1433
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 516
BstPAI GACNNNNGTC 1 cut(s) 513
BstSCI CCNGG 2 cut(s) 102, 1337
BstSFI CTRYAG 3 cut(s) 349, 679, 1434
BstSLI GKGCMC 1 cut(s) 960
BstV1I GCAGC 3 cut(s) 1372, 1420, 1448
BstXI CCANNNNNNTGG 1 cut(s) 1105
Bsu15I ATCGAT 1 cut(s) 462
BsuI GTATCC 2 cut(s) 274, 1098
BsuRI GGCC 2 cut(s) 920, 1333
BsuTUI ATCGAT 1 cut(s) 462
BtgI CCRYGG 1 cut(s) 1260
BtsCI GGATG 5 cut(s) 438, 488, 731, 1183, 1321
BtsIMutI CAGTG 1 cut(s) 946
BveI ACCTGC 1 cut(s) 545
Cac8I GCNNGC 4 cut(s) 79, 488, 492, 1335
CfoI GCGC 2 cut(s) 554, 721
Cfr13I GGNCC 1 cut(s) 1331
ClaI ATCGAT 1 cut(s) 462
Csp6I GTAC 2 cut(s) 612, 889
CviAII CATG 8 cut(s) 193, 300, 468, 513, 525, 602, 886, 1261
CviQI GTAC 2 cut(s) 612, 889
DdeI CTNAG 9 cut(s) 126, 239, 404, 448, 503, 578, 593, 1012, 1038
DpnI GATC 2 cut(s) 465, 1128
DpnII GATC 2 cut(s) 463, 1126
Eam1104I CTCTTC 1 cut(s) 872
EarI CTCTTC 1 cut(s) 872
Ecl136II GAGCTC 1 cut(s) 1268
Eco130I CCWWGG 4 cut(s) 568, 1098, 1240, 1260
Eco24I GRGCYC 1 cut(s) 1270
Eco31I GGTCTC 1 cut(s) 402
Eco32I GATATC 1 cut(s) 234
Eco47III AGCGCT 1 cut(s) 720
Eco53kI GAGCTC 1 cut(s) 1268
Eco57I CTGAAG 2 cut(s) 369, 1413
Eco88I CYCGRG 2 cut(s) 1070, 1279
EcoICRI GAGCTC 1 cut(s) 1268
EcoRII CCWGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 234
EcoT14I CCWWGG 4 cut(s) 568, 1098, 1240, 1260
EcoT38I GRGCYC 1 cut(s) 1270
ErhI CCWWGG 4 cut(s) 568, 1098, 1240, 1260
Esp3I CGTCTC 1 cut(s) 405
FaeI CATG 8 cut(s) 196, 303, 471, 516, 528, 605, 889, 1264
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 5 cut(s) 262, 521, 586, 867, 1127
FatI CATG 8 cut(s) 192, 299, 467, 512, 524, 601, 885, 1260
FblI GTMKAC 1 cut(s) 674
Fnu4HI GCNGC 3 cut(s) 1361, 1434, 1437
FokI GGATG 5 cut(s) 425, 495, 718, 1190, 1328
FriOI GRGCYC 1 cut(s) 1270
Fsp4HI GCNGC 3 cut(s) 1361, 1434, 1437
FspBI CTAG 4 cut(s) 74, 519, 818, 1092
GlaI GCGC 2 cut(s) 553, 720
GluI GCNGC 3 cut(s) 1361, 1434, 1437
GsuI CTGGAG 2 cut(s) 73, 1254
HaeII RGCGCY 1 cut(s) 722
HaeIII GGCC 2 cut(s) 920, 1333
HapII CCGG 1 cut(s) 1338
HhaI GCGC 2 cut(s) 554, 721
Hin1II CATG 8 cut(s) 196, 303, 471, 516, 528, 605, 889, 1264
Hin6I GCGC 2 cut(s) 552, 719
HinP1I GCGC 2 cut(s) 552, 719
HindIII AAGCTT 1 cut(s) 964
HinfI GANTC 5 cut(s) 880, 980, 1010, 1073, 1225
HpaII CCGG 1 cut(s) 1338
HphI GGTGA 3 cut(s) 7, 1090, 1300
Hpy166II GTNNAC 3 cut(s) 675, 815, 1276
Hpy188I TCNGA 2 cut(s) 190, 451
Hpy188III TCNNGA 5 cut(s) 1014, 1037, 1070, 1175, 1213
Hpy8I GTNNAC 3 cut(s) 675, 815, 1276
HpyAV CCTTC 6 cut(s) 34, 44, 146, 393, 509, 540
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 3 cut(s) 429, 1265, 1433
HpyF3I CTNAG 9 cut(s) 126, 239, 404, 448, 503, 578, 593, 1012, 1038
Hsp92II CATG 8 cut(s) 196, 303, 471, 516, 528, 605, 889, 1264
HspAI GCGC 2 cut(s) 552, 719
Kzo9I GATC 2 cut(s) 463, 1126
LmnI GCTCC 5 cut(s) 92, 428, 716, 1265, 1273
Lsp1109I GCAGC 3 cut(s) 1372, 1420, 1448
LweI GCATC 4 cut(s) 161, 162, 473, 675
MaeI CTAG 4 cut(s) 74, 519, 818, 1092
MaeIII GTNAC 4 cut(s) 262, 290, 631, 946
MalI GATC 2 cut(s) 465, 1128
MboI GATC 2 cut(s) 463, 1126
MboII GAAGA 7 cut(s) 46, 147, 384, 387, 834, 889, 1049
MhlI GDGCHC 2 cut(s) 960, 1270
MluCI AATT 7 cut(s) 58, 606, 642, 860, 974, 1187, 1401
MlyI GAGTC 4 cut(s) 889, 1004, 1082, 1234
MmeI TCCRAC 1 cut(s) 460
MnlI CCTC 9 cut(s) 23, 201, 737, 910, 970, 1129, 1203, 1366, 1450
MslI CAYNNNNRTG 2 cut(s) 869, 1254
MspA1I CMGCKG 1 cut(s) 1433
MspI CCGG 1 cut(s) 1338
MspR9I CCNGG 2 cut(s) 104, 1339
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 3 cut(s) 429, 1265, 1433
NciI CCSGG 1 cut(s) 1339
NcoI CCATGG 1 cut(s) 1260
NdeII GATC 2 cut(s) 463, 1126
NlaIII CATG 8 cut(s) 196, 303, 471, 516, 528, 605, 889, 1264
NlaIV GGNNCC 2 cut(s) 306, 1018
NmuCI GTSAC 3 cut(s) 262, 290, 631
NspI RCATGY 1 cut(s) 516
PaeR7I CTCGAG 2 cut(s) 1070, 1279
PaqCI CACCTGC 1 cut(s) 545
PciI ACATGT 1 cut(s) 512
PcsI WCGNNNNNNNCGW 1 cut(s) 1082
PfeI GAWTC 1 cut(s) 980
PflMI CCANNNNNTGG 1 cut(s) 1312
PkrI GCNGC 3 cut(s) 1362, 1435, 1438
PleI GAGTC 4 cut(s) 888, 1004, 1081, 1233
PpsI GAGTC 4 cut(s) 888, 1004, 1081, 1233
PscI ACATGT 1 cut(s) 512
PshAI GACNNNNGTC 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 1270
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 2 cut(s) 306, 1018
PspPI GGNCC 1 cut(s) 1331
PspXI VCTCGAGB 1 cut(s) 1279
PstI CTGCAG 1 cut(s) 1438
PvuII CAGCTG 1 cut(s) 1433
RsaI GTAC 2 cut(s) 613, 890
RsaNI GTAC 2 cut(s) 612, 889
RseI CAYNNNNRTG 2 cut(s) 869, 1254
SacI GAGCTC 1 cut(s) 1270
SatI GCNGC 3 cut(s) 1361, 1434, 1437
Sau3AI GATC 2 cut(s) 463, 1126
Sau96I GGNCC 1 cut(s) 1331
ScaI AGTACT 1 cut(s) 613
SchI GAGTC 4 cut(s) 889, 1004, 1082, 1234
ScrFI CCNGG 2 cut(s) 104, 1339
SduI GDGCHC 2 cut(s) 960, 1270
SfaNI GCATC 4 cut(s) 161, 162, 473, 675
SfcI CTRYAG 3 cut(s) 349, 679, 1434
Sfr274I CTCGAG 2 cut(s) 1070, 1279
SlaI CTCGAG 2 cut(s) 1070, 1279
SmiMI CAYNNNNRTG 2 cut(s) 869, 1254
SmlI CTYRAG 6 cut(s) 267, 961, 967, 1070, 1279, 1443
SmoI CTYRAG 6 cut(s) 267, 961, 967, 1070, 1279, 1443
SpeI ACTAGT 1 cut(s) 817
Sse9I AATT 7 cut(s) 58, 606, 642, 860, 974, 1187, 1401
SspI AATATT 1 cut(s) 628
SspMI CTAG 4 cut(s) 74, 519, 818, 1092
SstI GAGCTC 1 cut(s) 1270
StyD4I CCNGG 2 cut(s) 102, 1337
StyI CCWWGG 4 cut(s) 568, 1098, 1240, 1260
TaaI ACNGT 1 cut(s) 43
TaqI TCGA 4 cut(s) 164, 462, 1071, 1280
TasI AATT 7 cut(s) 58, 606, 642, 860, 974, 1187, 1401
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 1 cut(s) 980
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 3 cut(s) 262, 290, 631
TseI GCWGC 3 cut(s) 1360, 1433, 1436
Tsp45I GTSAC 3 cut(s) 262, 290, 631
TspDTI ATGAA 3 cut(s) 522, 590, 1169
TspGWI ACGGA 1 cut(s) 1054
TspRI CASTG 1 cut(s) 946
Van91I CCANNNNNTGG 1 cut(s) 1312
XapI RAATTY 2 cut(s) 642, 974
XceI RCATGY 1 cut(s) 516
XhoI CTCGAG 2 cut(s) 1070, 1279
XmiI GTMKAC 1 cut(s) 674
XspI CTAG 4 cut(s) 74, 519, 818, 1092
ZrmI AGTACT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.