Prupe.4G107200_v2.0.a1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0017159
Physical Location & Seq
Reverse (-)
5601320 .. 5603093
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G107200.1

Sequence Viewer

Length: 1287 bp
ATGCCGTCACAAGTGTCAGATATGATGGAGCCTTTGAGGGGAGTTAGAGATGGGTACTTGATATCACTTAACTTGGGGACACCCCCACAAGTCATTCAGGTTTACATGGATACTGGGAGTGATCTTACTTGGGTTCCTTGCGGGAATCTTTCTTTTGTTTGCATGGATTGTGATGACTATAGGAACAACAGACTAATGCCCACATTCTCTCCTTCCGCTTCCTCTTCATCACTTAGAGACCTCTGTGGTAGCTCCTTTTGCCTTGACATCCATAGCTCAGAAAATTCTATCGATCCGTGCACCATAGCCGGATGCTCACTCACTACCCTTCTTAAGGCCACATGTCCTAGACCATGCCCTTCATTTGCTTACACTTATGGGGGAGGTGGGGTTGTCACAGGGACACTTAGTAGAGACACACTTAGGGTTCATGGAATTAGTAGCACTCCCGATAATGTTGTCACAAGGGAAGTTCCCAAGTTTTGTTTTGGGTGCATTGGGTCTACTTATAGAGAGCCTATTGGGATTGCAGGGTTTGGTAGGGGATCACTTTCCCTCCCATCCCAATTAGGGTTCCTTCAAAAGGGCTTCTCTCATTGTTTCTTGCCTTTCAAGTATGCAAACAACCCTAATATTTCAAGTCCACTAGTTGTAGGAGATGTTGCTATTTCTTCTAAGGAAAACTTGCAATTCACTCCAATGTTGAAGAGTCCCATGTACCCTAACAACTACTACATAGGTCTAGAGGCTATCACAATAGGTAATGCCACTGCAATTACCCAAATGCCCTTAAGCTTGAGAGAGTTTGATGCTCAAGGCAATGGGGGAATGTTGATCGACTCAGGAACCACTTATACTCATTTGCCTGAACCACTTTACTCTAACCTTCTCTCACTTCTCCACTCAGTGATTTCATACCCTAGAGCCAAGGAAATGGAGACAAAGACTTCTTTTGATCTTTGTTATGTGGTCCCATACACAATCAATACTCTCACAAAACCTGGTGACCTATTTCCTTCAATCACTTTCCATTTCTTGAAAAATGTGAGTCTTGTTTTGCCCCAAGGCAATCACTTTTATGCCATGGGAGCTCCAGCCAACTCCACTGTGGTGAAATGCTTGTTGTTCCAAGCCATGGATGATGAAGATTATGGGCCAGCTGGGGTGTTTGGGAGCTTTCAGCAACAAAATGTAGAGGTTGTTTATGACCTGGAGAAAGAGAGAATTGGGTTTCAACCAATGGACTGCGCTTCAGCTTCCGCCTCTCAAGGACTGCACAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N TRAM_LAG1_CLN8

Protein Analysis

429

Amino Acids

46.52

Weight (kDa)

5.48

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017159)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45120
fragaria_vesca FvH4_3g11920
malus_domestica MD05G1256600.v1.1 MD10G1237100.v1.1
prunus_persica Prupe.4G107200_v2.0.a1
pyrus_communis pycom05g23590
rosa_chinensis RchiOBHm_Chr5g0019451
rosa_laevigata RLG00000032444
rosa_roxburghii Rroxscaffold_1G00058610
rosa_rugosa Rorug05G0051000
rosa_samantha Rh5BG140300 Rh5CG152000 Rh5DG140800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1135
AccI GTMKAC 1 cut(s) 503
AciI CCGC 3 cut(s) 141, 216, 1260
AclWI GGATC 2 cut(s) 287, 553
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 1236
AdeI CACNNNGTG 1 cut(s) 907
AfaI GTAC 2 cut(s) 56, 719
AfiI CCNNNNNNNGG 5 cut(s) 38, 334, 570, 583, 1135
AflII CTTAAG 2 cut(s) 332, 790
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 7 cut(s) 581, 613, 639, 706, 1020, 1039, 1235
AhlI ACTAGT 1 cut(s) 646
AjnI CCWGG 2 cut(s) 1000, 1209
AleI CACNNNNGTG 1 cut(s) 1109
AluBI AGCT 7 cut(s) 252, 276, 795, 1091, 1160, 1176, 1256
AluI AGCT 7 cut(s) 252, 276, 795, 1091, 1160, 1176, 1256
Alw21I GWGCWC 2 cut(s) 302, 1093
Alw26I GTCTC 3 cut(s) 231, 408, 932
Alw44I GTGCAC 1 cut(s) 298
AlwI GGATC 2 cut(s) 287, 553
AoxI GGCC 2 cut(s) 336, 1154
ApaLI GTGCAC 1 cut(s) 298
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 1 cut(s) 1250
AspS9I GGNCC 2 cut(s) 970, 1154
AsuHPI GGTGA 2 cut(s) 1016, 1123
AvaII GGWCC 1 cut(s) 970
BaeGI GKGCMC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 1093
Bbv12I GWGCWC 2 cut(s) 302, 1093
BccI CCATC 3 cut(s) 19, 44, 568
BciT130I CCWGG 2 cut(s) 1002, 1211
BciVI GTATCC 1 cut(s) 103
BcoDI GTCTC 3 cut(s) 231, 408, 932
BcuI ACTAGT 1 cut(s) 646
BfaI CTAG 4 cut(s) 348, 647, 743, 921
BfmI CTRYAG 1 cut(s) 178
BfrI CTTAAG 2 cut(s) 332, 790
BfuI GTATCC 1 cut(s) 103
Bme1390I CCNGG 2 cut(s) 1002, 1211
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 2 cut(s) 970, 1154
BmiI GGNNCC 5 cut(s) 30, 135, 575, 847, 972
BmrFI CCNGG 2 cut(s) 1002, 1211
BmrI ACTGGG 1 cut(s) 123
BmsI GCATC 2 cut(s) 302, 799
BmuI ACTGGG 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 1077, 1232
BpuEI CTTGAG 3 cut(s) 798, 817, 1251
Bsa29I ATCGAT 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 4 cut(s) 927, 1063, 1083, 1134
BsaXI ACNNNNNCTCC 6 cut(s) 193, 223, 375, 405, 540, 570
Bsc4I CCNNNNNNNGG 5 cut(s) 38, 334, 570, 583, 1135
Bse1I ACTGG 1 cut(s) 118
Bse3DI GCAATG 1 cut(s) 826
BseBI CCWGG 2 cut(s) 1002, 1211
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 4 cut(s) 927, 1063, 1083, 1134
BseGI GGATG 4 cut(s) 267, 317, 560, 1144
BseLI CCNNNNNNNGG 5 cut(s) 38, 334, 570, 583, 1135
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 3 cut(s) 291, 855, 918
BseNI ACTGG 1 cut(s) 118
BseSI GKGCMC 1 cut(s) 302
BseYI CCCAGC 1 cut(s) 1160
BsgI GTGCAG 1 cut(s) 1259
BshFI GGCC 2 cut(s) 338, 1156
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 302, 1093
BsiSI CCGG 1 cut(s) 309
BslFI GGGAC 4 cut(s) 91, 415, 696, 956
BslI CCNNNNNNNGG 5 cut(s) 38, 334, 570, 583, 1135
BsmAI GTCTC 3 cut(s) 231, 408, 932
BsmFI GGGAC 4 cut(s) 91, 415, 696, 956
BsnI GGCC 2 cut(s) 338, 1156
Bso31I GGTCTC 1 cut(s) 231
Bsp1286I GDGCHC 2 cut(s) 302, 1093
Bsp143I GATC 5 cut(s) 121, 292, 545, 834, 955
Bsp19I CCATGG 2 cut(s) 1083, 1134
BspACI CCGC 3 cut(s) 141, 216, 1260
BspANI GGCC 2 cut(s) 338, 1156
BspCNI CTCAG 3 cut(s) 290, 854, 917
BspDI ATCGAT 1 cut(s) 291
BspLI GGNNCC 5 cut(s) 30, 135, 575, 847, 972
BspPI GGATC 2 cut(s) 287, 553
BspTI CTTAAG 2 cut(s) 332, 790
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 826
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 4 cut(s) 927, 1063, 1083, 1134
BssMI GATC 5 cut(s) 121, 292, 545, 834, 955
BssT1I CCWWGG 4 cut(s) 927, 1063, 1083, 1134
Bst2UI CCWGG 2 cut(s) 1002, 1211
Bst4CI ACNGT 1 cut(s) 1108
Bst6I CTCTTC 2 cut(s) 229, 701
BstAFI CTTAAG 2 cut(s) 332, 790
BstC8I GCNNGC 1 cut(s) 1158
BstDEI CTNAG 7 cut(s) 233, 277, 407, 422, 675, 841, 904
BstDSI CCRYGG 2 cut(s) 1083, 1134
BstEII GGTNACC 1 cut(s) 1004
BstENI CCTNNNNNAGG 2 cut(s) 332, 581
BstF5I GGATG 4 cut(s) 267, 317, 560, 1144
BstHHI GCGC 1 cut(s) 1250
BstKTI GATC 5 cut(s) 124, 295, 548, 837, 958
BstMAI GTCTC 3 cut(s) 231, 408, 932
BstMBI GATC 5 cut(s) 121, 292, 545, 834, 955
BstMWI GCNNNNNNNGC 2 cut(s) 258, 1088
BstNI CCWGG 2 cut(s) 1002, 1211
BstNSI RCATGY 1 cut(s) 345
BstPI GGTNACC 1 cut(s) 1004
BstSCI CCNGG 2 cut(s) 1000, 1209
BstSFI CTRYAG 1 cut(s) 178
BstSLI GKGCMC 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 934
Bsu15I ATCGAT 1 cut(s) 291
BsuI GTATCC 1 cut(s) 103
BsuRI GGCC 2 cut(s) 338, 1156
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 2 cut(s) 1083, 1134
BtsCI GGATG 4 cut(s) 267, 317, 560, 1144
BtsI GCAGTG 1 cut(s) 768
BtsIMutI CAGTG 3 cut(s) 768, 912, 1104
Cac8I GCNNGC 1 cut(s) 1158
CfoI GCGC 1 cut(s) 1250
Cfr13I GGNCC 2 cut(s) 970, 1154
ClaI ATCGAT 1 cut(s) 291
CsiI ACCWGGT 1 cut(s) 1000
Csp6I GTAC 2 cut(s) 55, 718
CviAII CATG 8 cut(s) 106, 163, 342, 354, 431, 715, 1084, 1135
CviQI GTAC 2 cut(s) 55, 718
DdeI CTNAG 7 cut(s) 233, 277, 407, 422, 675, 841, 904
DpnI GATC 5 cut(s) 123, 294, 547, 836, 957
DpnII GATC 5 cut(s) 121, 292, 545, 834, 955
DraIII CACNNNGTG 1 cut(s) 907
Eam1104I CTCTTC 2 cut(s) 229, 701
EarI CTCTTC 2 cut(s) 229, 701
EciI GGCGGA 1 cut(s) 1249
Ecl136II GAGCTC 1 cut(s) 1091
Eco130I CCWWGG 4 cut(s) 927, 1063, 1083, 1134
Eco24I GRGCYC 1 cut(s) 1093
Eco31I GGTCTC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 1091
Eco57I CTGAAG 1 cut(s) 1236
Eco91I GGTNACC 1 cut(s) 1004
EcoICRI GAGCTC 1 cut(s) 1091
EcoNI CCTNNNNNAGG 2 cut(s) 332, 581
EcoO65I GGTNACC 1 cut(s) 1004
EcoRII CCWGG 2 cut(s) 1000, 1209
EcoRV GATATC 1 cut(s) 63
EcoT14I CCWWGG 4 cut(s) 927, 1063, 1083, 1134
EcoT38I GRGCYC 1 cut(s) 1093
ErhI CCWWGG 4 cut(s) 927, 1063, 1083, 1134
FaeI CATG 8 cut(s) 109, 166, 345, 357, 434, 718, 1087, 1138
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 4 cut(s) 91, 415, 696, 956
FatI CATG 8 cut(s) 105, 162, 341, 353, 430, 714, 1083, 1134
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 1 cut(s) 503
FokI GGATG 4 cut(s) 254, 324, 547, 1151
FriOI GRGCYC 1 cut(s) 1093
FspBI CTAG 4 cut(s) 348, 647, 743, 921
GlaI GCGC 1 cut(s) 1249
GsaI CCCAGC 1 cut(s) 1164
GsuI CTGGAG 2 cut(s) 1077, 1232
HaeIII GGCC 2 cut(s) 338, 1156
HapII CCGG 1 cut(s) 309
HhaI GCGC 1 cut(s) 1250
Hin1II CATG 8 cut(s) 109, 166, 345, 357, 434, 718, 1087, 1138
Hin6I GCGC 1 cut(s) 1248
HinP1I GCGC 1 cut(s) 1248
HindIII AAGCTT 1 cut(s) 793
HinfI GANTC 4 cut(s) 145, 709, 839, 1048
HpaII CCGG 1 cut(s) 309
HphI GGTGA 2 cut(s) 1016, 1123
Hpy166II GTNNAC 4 cut(s) 103, 300, 504, 644
Hpy188I TCNGA 2 cut(s) 19, 280
Hpy188III TCNNGA 4 cut(s) 449, 743, 843, 1036
Hpy8I GTNNAC 4 cut(s) 103, 300, 504, 644
HpyAV CCTTC 6 cut(s) 222, 338, 369, 587, 896, 1026
HpyCH4III ACNGT 1 cut(s) 1108
HpyCH4V TGCA 8 cut(s) 162, 300, 495, 530, 620, 688, 773, 1276
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 1088
HpyF3I CTNAG 7 cut(s) 233, 277, 407, 422, 675, 841, 904
Hsp92II CATG 8 cut(s) 109, 166, 345, 357, 434, 718, 1087, 1138
HspAI GCGC 1 cut(s) 1248
Kzo9I GATC 5 cut(s) 121, 292, 545, 834, 955
LmnI GCTCC 5 cut(s) 28, 257, 1088, 1096, 1173
LweI GCATC 2 cut(s) 302, 799
MabI ACCWGGT 1 cut(s) 1000
MaeI CTAG 4 cut(s) 348, 647, 743, 921
MaeIII GTNAC 4 cut(s) 6, 394, 460, 1004
MalI GATC 5 cut(s) 123, 294, 547, 836, 957
MboI GATC 5 cut(s) 121, 292, 545, 834, 955
MboII GAAGA 4 cut(s) 216, 663, 718, 1157
MhlI GDGCHC 2 cut(s) 302, 1093
MluCI AATT 6 cut(s) 283, 435, 566, 689, 774, 1224
MlyI GAGTC 3 cut(s) 718, 833, 1057
MnlI CCTC 8 cut(s) 30, 232, 251, 377, 566, 739, 1189, 1273
MseI TTAA 3 cut(s) 69, 333, 791
MslI CAYNNNNRTG 3 cut(s) 698, 1077, 1109
MspA1I CMGCKG 1 cut(s) 1160
MspCI CTTAAG 2 cut(s) 332, 790
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 2 cut(s) 1002, 1211
MvaI CCWGG 2 cut(s) 1002, 1211
MwoI GCNNNNNNNGC 2 cut(s) 258, 1088
NcoI CCATGG 2 cut(s) 1083, 1134
NdeII GATC 5 cut(s) 121, 292, 545, 834, 955
NlaIII CATG 8 cut(s) 109, 166, 345, 357, 434, 718, 1087, 1138
NlaIV GGNNCC 5 cut(s) 30, 135, 575, 847, 972
NmuCI GTSAC 4 cut(s) 6, 394, 460, 1004
NspI RCATGY 1 cut(s) 345
OliI CACNNNNGTG 1 cut(s) 1109
PciI ACATGT 1 cut(s) 341
PfeI GAWTC 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 1135
PleI GAGTC 3 cut(s) 717, 833, 1056
PpsI GAGTC 3 cut(s) 717, 833, 1056
PscI ACATGT 1 cut(s) 341
Psp124BI GAGCTC 1 cut(s) 1093
Psp6I CCWGG 2 cut(s) 1000, 1209
PspEI GGTNACC 1 cut(s) 1004
PspFI CCCAGC 1 cut(s) 1160
PspGI CCWGG 2 cut(s) 1000, 1209
PspN4I GGNNCC 5 cut(s) 30, 135, 575, 847, 972
PspPI GGNCC 2 cut(s) 970, 1154
PsrI GAACNNNNNNTAC 2 cut(s) 838, 870
PvuII CAGCTG 1 cut(s) 1160
RsaI GTAC 2 cut(s) 56, 719
RsaNI GTAC 2 cut(s) 55, 718
RseI CAYNNNNRTG 3 cut(s) 698, 1077, 1109
SacI GAGCTC 1 cut(s) 1093
SaqAI TTAA 3 cut(s) 69, 333, 791
Sau3AI GATC 5 cut(s) 121, 292, 545, 834, 955
Sau96I GGNCC 2 cut(s) 970, 1154
SchI GAGTC 3 cut(s) 718, 833, 1057
ScrFI CCNGG 2 cut(s) 1002, 1211
SduI GDGCHC 2 cut(s) 302, 1093
SexAI ACCWGGT 1 cut(s) 1000
SfaNI GCATC 2 cut(s) 302, 799
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 3 cut(s) 698, 1077, 1109
SmlI CTYRAG 5 cut(s) 332, 790, 796, 813, 1266
SmoI CTYRAG 5 cut(s) 332, 790, 796, 813, 1266
SpeI ACTAGT 1 cut(s) 646
Sse9I AATT 6 cut(s) 283, 435, 566, 689, 774, 1224
SsiI CCGC 3 cut(s) 141, 216, 1260
SspI AATATT 1 cut(s) 634
SspMI CTAG 4 cut(s) 348, 647, 743, 921
SstI GAGCTC 1 cut(s) 1093
StyD4I CCNGG 2 cut(s) 1000, 1209
StyI CCWWGG 4 cut(s) 927, 1063, 1083, 1134
TaaI ACNGT 1 cut(s) 1108
TaqI TCGA 2 cut(s) 291, 837
TasI AATT 6 cut(s) 283, 435, 566, 689, 774, 1224
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 69, 333, 791
Tru9I TTAA 3 cut(s) 69, 333, 791
TscAI CASTG 3 cut(s) 775, 912, 1111
TseFI GTSAC 4 cut(s) 6, 394, 460, 1004
Tsp45I GTSAC 4 cut(s) 6, 394, 460, 1004
TspDTI ATGAA 5 cut(s) 216, 351, 419, 903, 1158
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 3 cut(s) 775, 912, 1111
Van91I CCANNNNNTGG 1 cut(s) 1135
Vha464I CTTAAG 2 cut(s) 332, 790
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 970
XagI CCTNNNNNAGG 2 cut(s) 332, 581
XapI RAATTY 1 cut(s) 283
XbaI TCTAGA 1 cut(s) 742
XceI RCATGY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 1105
XmiI GTMKAC 1 cut(s) 503
XspI CTAG 4 cut(s) 348, 647, 743, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.