Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Reverse (-)

7407272 .. 7410152

Gene Structure 2881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g12460.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGGTAGGGGAAAGATAAATATTTCAAGGATAGAGAACAAAACCACAAGGCAAGTGACTTTTGCGAAACGCAGAGCTGGGCTTCTGAAGAAGACTCATGAGCTCTCTGTGTTGTGTGATGTCCAGATCGGCCTAGTCATCTTCTCAAGCACTGGGAAGATGTTTCAGTACTGCAGTGACTCAACAAGTATGGATGACATGATAAGAAGGTACCAGTATTCTTCAGGGACTCGTATACCACAACACAGTGACGCGGATATTCTTAATGCTGAGATAAGAAAAATCAGGAAAGAAACTCAGGACCTCCATCTGAGCTTGCAACGCTACACCGGTGAGGATCTGAGTTGTGTGCGATTTGAGGATTTGGAGGAGCTCGAAAATCGGCTAGAGGAGTCTGTCAACAGGGTTAGAGCTAGGAAGTTTGAGATCTTGCAACAAGAGGTTAACAATCTTCGCATAAGTACTAAACAGAGGGAGGAACAGAATGATGAACTATGCCATCTGATCAAGGAGCATCAGGCTGCAGTCTTTACTCATCAGCACCACTATCAGCAGCAAATGGGAATGGAACCAAGATCTGAGGAGCATCGACAACTAATGGAGCAATTCCCATTCTGTGGTGAAGAACAGCCTTTGCTTCAGCTTGCAACTACGTCCATGCAGCCTCAGTTTGCAGCTTACCCGGCTAGTTCTAGTTCTCTCCCACCTAATCCACCACACCTTCACGAGTTCAGTCTCAACACCCCCATCTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

253

Amino Acids

29.38

Weight (kDa)

6.27

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.3e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	85 - 169	5.1e-17	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	235
AccII	CGCG	1 cut(s)	254
AciI	CCGC	1 cut(s)	254
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	107, 207, 623
AfaI	GTAC	3 cut(s)	170, 212, 463
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	1 cut(s)	27
AluBI	AGCT	7 cut(s)	77, 103, 315, 373, 413, 643, 677
AluI	AGCT	7 cut(s)	77, 103, 315, 373, 413, 643, 677
Alw21I	GWGCWC	2 cut(s)	105, 375
Alw26I	GTCTC	1 cut(s)	740
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	4 cut(s)	521, 553, 661, 674
AsiGI	ACCGGT	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	683
AsuHPI	GGTGA	2 cut(s)	344, 632
AvaII	GGWCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	2 cut(s)	105, 375
BauI	CACGAG	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	105, 375
BbvI	GCAGC	4 cut(s)	508, 565, 673, 686
BccI	CCATC	3 cut(s)	315, 507, 755
BclI	TGATCA	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	683
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	5 cut(s)	134, 386, 414, 687, 693
BfmI	CTRYAG	2 cut(s)	172, 522
BglII	AGATCT	2 cut(s)	426, 575
BisI	GCNGC	4 cut(s)	522, 554, 662, 675
BlsI	GCNGC	4 cut(s)	523, 555, 663, 676
BmcAI	AGTACT	2 cut(s)	170, 463
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	212, 570
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	523, 595
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	683
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	157, 214
BseGI	GGATG	1 cut(s)	199
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMII	CTCAG	6 cut(s)	261, 302, 311, 332, 570, 680
BseNI	ACTGG	2 cut(s)	157, 214
BseRI	GAGGAG	3 cut(s)	383, 404, 596
BseXI	GCAGC	4 cut(s)	508, 565, 673, 686
BseYI	CCCAGC	1 cut(s)	77
Bsh1236I	CGCG	1 cut(s)	254
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	105, 375
BsiSI	CCGG	2 cut(s)	330, 683
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	740
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	105, 375
Bsp143I	GATC	5 cut(s)	126, 337, 426, 504, 575
BspACI	CCGC	1 cut(s)	254
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	6 cut(s)	262, 303, 310, 333, 571, 679
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	212, 570
BspMAI	CTGCAG	2 cut(s)	176, 526
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	157, 214
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	5 cut(s)	126, 337, 426, 504, 575
BssNAI	GTATAC	1 cut(s)	236
BssSI	CACGAG	1 cut(s)	725
Bst1107I	GTATAC	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	317, 645
BstDEI	CTNAG	6 cut(s)	270, 297, 311, 341, 579, 666
BstF5I	GGATG	1 cut(s)	199
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	5 cut(s)	129, 340, 429, 507, 578
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	5 cut(s)	126, 337, 426, 504, 575
BstMWI	GCNNNNNNNGC	2 cut(s)	321, 683
BstSCI	CCNGG	1 cut(s)	681
BstSFI	CTRYAG	2 cut(s)	172, 522
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	4 cut(s)	508, 565, 673, 686
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	3 cut(s)	337, 426, 575
BstYI	RGATCY	3 cut(s)	337, 426, 575
BstZ17I	GTATAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	3 cut(s)	150, 181, 253
Cac8I	GCNNGC	2 cut(s)	317, 645
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	301
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	169, 211, 462
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	98, 199, 658
CviQI	GTAC	3 cut(s)	169, 211, 462
DdeI	CTNAG	6 cut(s)	270, 297, 311, 341, 579, 666
DpnI	GATC	5 cut(s)	128, 339, 428, 506, 577
DpnII	GATC	5 cut(s)	126, 337, 426, 504, 575
Ecl136II	GAGCTC	2 cut(s)	103, 373
Eco24I	GRGCYC	2 cut(s)	105, 375
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	2 cut(s)	103, 373
Eco57I	CTGAAG	3 cut(s)	107, 207, 623
EcoICRI	GAGCTC	2 cut(s)	103, 373
EcoO109I	RGGNCCY	1 cut(s)	301
EcoT38I	GRGCYC	2 cut(s)	105, 375
FaeI	CATG	3 cut(s)	101, 202, 661
FaiI	YATR	8 cut(s)	99, 191, 200, 236, 458, 496, 659, 753
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	3 cut(s)	97, 198, 657
FbaI	TGATCA	1 cut(s)	504
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	522, 554, 662, 675
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	2 cut(s)	105, 375
Fsp4HI	GCNGC	4 cut(s)	522, 554, 662, 675
FspBI	CTAG	5 cut(s)	134, 386, 414, 687, 693
GluI	GCNGC	4 cut(s)	522, 554, 662, 675
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	2 cut(s)	330, 683
HgaI	GACGC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	101, 202, 661
HincII	GTYRAC	2 cut(s)	400, 445
HindII	GTYRAC	2 cut(s)	400, 445
HinfI	GANTC	4 cut(s)	94, 179, 229, 392
HpaI	GTTAAC	1 cut(s)	445
HpaII	CCGG	2 cut(s)	330, 683
HphI	GGTGA	2 cut(s)	344, 632
Hpy166II	GTNNAC	3 cut(s)	236, 400, 445
Hpy188I	TCNGA	5 cut(s)	87, 312, 342, 504, 580
Hpy188III	TCNNGA	5 cut(s)	98, 124, 286, 299, 725
Hpy8I	GTNNAC	3 cut(s)	236, 400, 445
HpyAV	CCTTC	2 cut(s)	201, 731
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	7 cut(s)	174, 319, 433, 524, 647, 661, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	321, 683
HpyF3I	CTNAG	6 cut(s)	270, 297, 311, 341, 579, 666
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	3 cut(s)	101, 202, 661
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	504
KspAI	GTTAAC	1 cut(s)	445
Kzo9I	GATC	5 cut(s)	126, 337, 426, 504, 575
LmnI	GCTCC	4 cut(s)	370, 511, 583, 601
Lsp1109I	GCAGC	4 cut(s)	508, 565, 673, 686
LweI	GCATC	2 cut(s)	523, 595
MaeI	CTAG	5 cut(s)	134, 386, 414, 687, 693
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	3 cut(s)	55, 176, 248
MalI	GATC	5 cut(s)	128, 339, 428, 506, 577
MboI	GATC	5 cut(s)	126, 337, 426, 504, 575
MboII	GAAGA	7 cut(s)	100, 103, 133, 169, 213, 443, 635
MflI	RGATCY	3 cut(s)	337, 426, 575
MhlI	GDGCHC	2 cut(s)	105, 375
MluCI	AATT	1 cut(s)	605
MlyI	GAGTC	4 cut(s)	88, 173, 223, 401
MseI	TTAA	2 cut(s)	264, 444
MspI	CCGG	2 cut(s)	330, 683
MspR9I	CCNGG	1 cut(s)	683
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	321, 683
NciI	CCSGG	1 cut(s)	683
NdeII	GATC	5 cut(s)	126, 337, 426, 504, 575
NlaIII	CATG	3 cut(s)	101, 202, 661
NlaIV	GGNNCC	2 cut(s)	212, 570
NmuCI	GTSAC	3 cut(s)	55, 176, 248
PagI	TCATGA	1 cut(s)	97
PflMI	CCANNNNNTGG	1 cut(s)	617
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	523, 555, 663, 676
PleI	GAGTC	4 cut(s)	88, 173, 223, 400
PpsI	GAGTC	4 cut(s)	88, 173, 223, 400
PpuMI	RGGWCCY	1 cut(s)	301
Psp124BI	GAGCTC	2 cut(s)	105, 375
Psp5II	RGGWCCY	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	212, 570
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	176, 526
PsuI	RGATCY	3 cut(s)	337, 426, 575
RsaI	GTAC	3 cut(s)	170, 212, 463
RsaNI	GTAC	3 cut(s)	169, 211, 462
SacI	GAGCTC	2 cut(s)	105, 375
SaqAI	TTAA	2 cut(s)	264, 444
SatI	GCNGC	4 cut(s)	522, 554, 662, 675
Sau3AI	GATC	5 cut(s)	126, 337, 426, 504, 575
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	2 cut(s)	170, 463
SchI	GAGTC	4 cut(s)	88, 173, 223, 401
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	2 cut(s)	105, 375
SfaNI	GCATC	2 cut(s)	523, 595
SfcI	CTRYAG	2 cut(s)	172, 522
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	605
SsiI	CCGC	1 cut(s)	254
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	5 cut(s)	134, 386, 414, 687, 693
SstI	GAGCTC	2 cut(s)	105, 375
StyD4I	CCNGG	1 cut(s)	681
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	2 cut(s)	375, 589
TasI	AATT	1 cut(s)	605
TatI	WGTACW	2 cut(s)	168, 461
Tru1I	TTAA	2 cut(s)	264, 444
Tru9I	TTAA	2 cut(s)	264, 444
TscAI	CASTG	3 cut(s)	157, 181, 253
TseFI	GTSAC	3 cut(s)	55, 176, 248
TseI	GCWGC	4 cut(s)	521, 553, 661, 674
Tsp45I	GTSAC	3 cut(s)	55, 176, 248
TspDTI	ATGAA	1 cut(s)	504
TspRI	CASTG	3 cut(s)	157, 181, 253
Van91I	CCANNNNNTGG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	5 cut(s)	134, 386, 414, 687, 693
ZrmI	AGTACT	2 cut(s)	170, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.