Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Reverse (-)

15532693 .. 15539623

Gene Structure 6931 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G013230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGATTTACCAGGACTTTGAATGCACGAAGGCAACCGGACCCATCTGATGATGAATCTGATCTTCTGCAGAAACCTAGCGGAACAAGTAAAGAGGATCATATTCTCATTGCATGCTTGATTCAGATGGTTATGATTCACCCTTGTTGCCAAAACCTGAAAATCCCAGCCTCTCCAACAAGCAAAGCCAGAACAGAAAAGAGCATGGAGGAAATTATAAGAAGGTACCAGTATGCTTCAGGGACACGTATACCACAACACAGTGACACGGACTTTTTGAATGCTGAGATAAGAAAGATCAGGAAAGAAACTCAGGACCTCCATTTGAGCTTGCAACGCTACACCGGTGAGGATCTGAGTTCTGTGCGATTTGAGGATTTGGAGGAGCTCGAAAATCGGCTAGAGGAATCTGTCAACAGGGTTAGAGCTAGGAAGTTTGAGATCTTGCAACAAGAGGTTCATAATCTTCGCTTAAGTACCAAACAGAGGGAGGAACAGAATGATGAACTATGTCATCTGATTAAGGAGCATCAGGCTGCAGTCTTTGCTCATCAGCACCATTATCAGCAGCAAATGGAAATGGAACCGAAATCTGAGGAGCATCGACAGCTAATGGAACAATTCCCATTCTGTGGTGAGGAACAGCCTTTGCTTCAGCTTGCAACTACATCCATGCAGCCTCAGTTTGCCTACCAGGCTAGTACTAGTTCTCTCCCGCCTAATCCACCACAGCTTCACGATTTCAGTCTCAACACCCCCATCTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

256

Amino Acids

29.95

Weight (kDa)

5.75

Isoelectric Point (pI)

60.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	87 - 174	4.1e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
Acc65I	GGTACC	1 cut(s)	225
AccB1I	GGYRCC	1 cut(s)	225
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccI	GTMKAC	1 cut(s)	250
AciI	CCGC	2 cut(s)	81, 716
AclWI	GGATC	2 cut(s)	105, 360
AcuI	CTGAAG	2 cut(s)	222, 638
AfaI	GTAC	3 cut(s)	227, 478, 703
AfiI	CCNNNNNNNGG	2 cut(s)	486, 632
AflII	CTTAAG	1 cut(s)	472
AflIII	ACRYGT	1 cut(s)	245
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	2 cut(s)	22, 280
AhlI	ACTAGT	1 cut(s)	704
AjnI	CCWGG	2 cut(s)	11, 693
AluBI	AGCT	6 cut(s)	330, 388, 428, 610, 658, 733
AluI	AGCT	6 cut(s)	330, 388, 428, 610, 658, 733
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	2 cut(s)	105, 360
ApeKI	GCWGC	3 cut(s)	536, 568, 676
AsiGI	ACCGGT	1 cut(s)	344
Asp718I	GGTACC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	40, 316
AsuHPI	GGTGA	3 cut(s)	131, 359, 647
AvaII	GGWCC	2 cut(s)	40, 316
BanI	GGYRCC	1 cut(s)	225
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	3 cut(s)	523, 580, 688
BccI	CCATC	3 cut(s)	52, 121, 767
BciT130I	CCWGG	2 cut(s)	13, 695
BcoDI	GTCTC	1 cut(s)	752
BcuI	ACTAGT	1 cut(s)	704
BfaI	CTAG	5 cut(s)	78, 401, 429, 699, 705
BfmI	CTRYAG	2 cut(s)	68, 537
BfrI	CTTAAG	1 cut(s)	472
BglI	GCCNNNNNGGC	1 cut(s)	695
BglII	AGATCT	1 cut(s)	441
BisI	GCNGC	3 cut(s)	537, 569, 677
BlsI	GCNGC	3 cut(s)	538, 570, 678
BmcAI	AGTACT	1 cut(s)	703
Bme1390I	CCNGG	2 cut(s)	13, 695
Bme18I	GGWCC	2 cut(s)	40, 316
BmgT120I	GGNCC	2 cut(s)	40, 316
BmiI	GGNNCC	3 cut(s)	42, 227, 585
BmrFI	CCNGG	2 cut(s)	13, 695
BmsI	GCATC	2 cut(s)	538, 610
BsaAI	YACGTR	1 cut(s)	248
BsaWI	WCCGGW	2 cut(s)	37, 344
Bsc4I	CCNNNNNNNGG	2 cut(s)	486, 632
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	13, 695
BseGI	GGATG	1 cut(s)	668
BseLI	CCNNNNNNNGG	2 cut(s)	486, 632
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	5 cut(s)	276, 326, 347, 585, 695
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	398, 611
BseXI	GCAGC	3 cut(s)	523, 580, 688
BseYI	CCCAGC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	225
BshTI	ACCGGT	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	390
BsiSI	CCGG	2 cut(s)	38, 345
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	486, 632
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	28, 286
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	61, 97, 297, 352, 441
BspACI	CCGC	2 cut(s)	81, 716
BspCNI	CTCAG	5 cut(s)	277, 325, 348, 586, 694
BspLI	GGNNCC	3 cut(s)	42, 227, 585
BspMAI	CTGCAG	2 cut(s)	72, 541
BspPI	GGATC	2 cut(s)	105, 360
BspT107I	GGYRCC	1 cut(s)	225
BspTI	CTTAAG	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	108
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	344
BssMI	GATC	5 cut(s)	61, 97, 297, 352, 441
BssNAI	GTATAC	1 cut(s)	251
Bst1107I	GTATAC	1 cut(s)	251
Bst2UI	CCWGG	2 cut(s)	13, 695
Bst4CI	ACNGT	1 cut(s)	263
BstAFI	CTTAAG	1 cut(s)	472
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	115, 332, 660
BstDEI	CTNAG	5 cut(s)	285, 312, 356, 594, 681
BstF5I	GGATG	1 cut(s)	668
BstKTI	GATC	5 cut(s)	64, 100, 300, 355, 444
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	5 cut(s)	61, 97, 297, 352, 441
BstMWI	GCNNNNNNNGC	4 cut(s)	336, 545, 607, 695
BstNI	CCWGG	2 cut(s)	13, 695
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	2 cut(s)	11, 693
BstSFI	CTRYAG	2 cut(s)	68, 537
BstV1I	GCAGC	3 cut(s)	523, 580, 688
BstX2I	RGATCY	2 cut(s)	352, 441
BstYI	RGATCY	2 cut(s)	352, 441
BstZ17I	GTATAC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	668
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	115, 332, 660
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	40, 316
Csp6I	GTAC	3 cut(s)	226, 477, 702
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	3 cut(s)	114, 205, 673
CviQI	GTAC	3 cut(s)	226, 477, 702
DdeI	CTNAG	5 cut(s)	285, 312, 356, 594, 681
DpnI	GATC	5 cut(s)	63, 99, 299, 354, 443
DpnII	GATC	5 cut(s)	61, 97, 297, 352, 441
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	40, 316
Eco53kI	GAGCTC	1 cut(s)	388
Eco57I	CTGAAG	2 cut(s)	222, 638
EcoICRI	GAGCTC	1 cut(s)	388
EcoO109I	RGGNCCY	1 cut(s)	316
EcoRII	CCWGG	2 cut(s)	11, 693
EcoT38I	GRGCYC	1 cut(s)	390
FaeI	CATG	3 cut(s)	117, 208, 676
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	3 cut(s)	113, 204, 672
FauI	CCCGC	1 cut(s)	723
FblI	GTMKAC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	537, 569, 677
FokI	GGATG	1 cut(s)	655
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	3 cut(s)	537, 569, 677
FspBI	CTAG	5 cut(s)	78, 401, 429, 699, 705
GluI	GCNGC	3 cut(s)	537, 569, 677
GsaI	CCCAGC	1 cut(s)	170
HapII	CCGG	2 cut(s)	38, 345
Hin1II	CATG	3 cut(s)	117, 208, 676
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	4 cut(s)	56, 121, 136, 407
HpaII	CCGG	2 cut(s)	38, 345
HphI	GGTGA	3 cut(s)	131, 359, 647
Hpy166II	GTNNAC	2 cut(s)	251, 415
Hpy188I	TCNGA	6 cut(s)	49, 61, 126, 357, 519, 595
Hpy188III	TCNNGA	3 cut(s)	301, 314, 737
Hpy8I	GTNNAC	2 cut(s)	251, 415
HpyAV	CCTTC	2 cut(s)	24, 216
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	8 cut(s)	26, 70, 113, 334, 448, 539, 662, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	336, 545, 607, 695
HpyF3I	CTNAG	5 cut(s)	285, 312, 356, 594, 681
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	3 cut(s)	117, 208, 676
KpnI	GGTACC	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	61, 97, 297, 352, 441
LmnI	GCTCC	3 cut(s)	385, 526, 598
Lsp1109I	GCAGC	3 cut(s)	523, 580, 688
LweI	GCATC	2 cut(s)	538, 610
MaeI	CTAG	5 cut(s)	78, 401, 429, 699, 705
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	263
MalI	GATC	5 cut(s)	63, 99, 299, 354, 443
MboI	GATC	5 cut(s)	61, 97, 297, 352, 441
MboII	GAAGA	2 cut(s)	56, 458
MflI	RGATCY	2 cut(s)	352, 441
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	213, 620
MmeI	TCCRAC	1 cut(s)	200
MseI	TTAA	2 cut(s)	473, 522
MspCI	CTTAAG	1 cut(s)	472
MspI	CCGG	2 cut(s)	38, 345
MspR9I	CCNGG	2 cut(s)	13, 695
Mva1269I	GAATGC	2 cut(s)	28, 286
MvaI	CCWGG	2 cut(s)	13, 695
MwoI	GCNNNNNNNGC	4 cut(s)	336, 545, 607, 695
NdeII	GATC	5 cut(s)	61, 97, 297, 352, 441
NlaIII	CATG	3 cut(s)	117, 208, 676
NlaIV	GGNNCC	3 cut(s)	42, 227, 585
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	117
PctI	GAATGC	2 cut(s)	28, 286
PfeI	GAWTC	4 cut(s)	56, 121, 136, 407
PflMI	CCANNNNNTGG	1 cut(s)	632
PinAI	ACCGGT	1 cut(s)	344
PkrI	GCNGC	3 cut(s)	538, 570, 678
Ppu21I	YACGTR	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	316
PsiI	TTATAA	1 cut(s)	218
Psp124BI	GAGCTC	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	11, 693
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	11, 693
PspN4I	GGNNCC	3 cut(s)	42, 227, 585
PspPI	GGNCC	2 cut(s)	40, 316
PspPPI	RGGWCCY	1 cut(s)	316
PstI	CTGCAG	2 cut(s)	72, 541
PsuI	RGATCY	2 cut(s)	352, 441
RsaI	GTAC	3 cut(s)	227, 478, 703
RsaNI	GTAC	3 cut(s)	226, 477, 702
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	473, 522
SatI	GCNGC	3 cut(s)	537, 569, 677
Sau3AI	GATC	5 cut(s)	61, 97, 297, 352, 441
Sau96I	GGNCC	2 cut(s)	40, 316
ScaI	AGTACT	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	13, 695
SduI	GDGCHC	1 cut(s)	390
SfaNI	GCATC	2 cut(s)	538, 610
SfcI	CTRYAG	2 cut(s)	68, 537
SgrAI	CRCCGGYG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	40, 316
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SpeI	ACTAGT	1 cut(s)	704
SphI	GCATGC	1 cut(s)	117
Sse9I	AATT	2 cut(s)	213, 620
SsiI	CCGC	2 cut(s)	81, 716
SspMI	CTAG	5 cut(s)	78, 401, 429, 699, 705
SstI	GAGCTC	1 cut(s)	390
StyD4I	CCNGG	2 cut(s)	11, 693
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	390, 604
TasI	AATT	2 cut(s)	213, 620
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	4 cut(s)	56, 121, 136, 407
Tru1I	TTAA	2 cut(s)	473, 522
Tru9I	TTAA	2 cut(s)	473, 522
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	536, 568, 676
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	69, 449, 519
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	268
Van91I	CCANNNNNTGG	1 cut(s)	632
Vha464I	CTTAAG	1 cut(s)	472
VpaK11BI	GGWCC	2 cut(s)	40, 316
XceI	RCATGY	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	250
XspI	CTAG	5 cut(s)	78, 401, 429, 699, 705
ZrmI	AGTACT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.