Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Reverse (-)

15039052 .. 15042442

Gene Structure 3391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG147600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTAGGGGAAAGATACATATTTCAAGGATAGAGAACCGAACCACCAGGCAAGTGACTTTTGCGAAACGCAGAGCTGGGCTTCTGAAGAAGACTCATGAGCTTTCTGTGCTGTGTGATGTCCAGATCGGCCTTGTCATCTTCTCAAGCACTGGGAAGATGTTTCAGTACTGCAGTGACTCAACAAGCATGGAGGAAATTATAAGAAGGTACCAGTATGCTTCAGGGACACGTATACCACAACACAGTGACACGGACTTTTTGAATGCTGAGATAAGAAAGATCAGGAAAGAAACTCAGGACCTCCATTTGAGCTTGCAACGCTACACAGGTGAGGATCTGAGTTCTGTGCGATTTGAGGATTTGGAGGAGCTCGAAAATCGGCTAGAGGAGTCTGTCAACAGGGTTAGAGCTAGGAAGTTTGAGATCTTGCAACAAGAGGTTCATAATCTTCGCTTAAGTACCAAACAGAGGGAGGAACAGAATGATGAACTATGCCATCTGATTAAGGAGCATCAGGCTGCAGTCTTTGCTCATCAGCACCATTATCAGCAGCAAATGGAAATGGAACCGAAATCTGAGGAGCATCGACAGCTAATGGAACAATTCCCATTCTGTGGTGAGGAACAGCCTTTGCTTCAGCTTGCAACTACATCCATGCAGCCTCAGTTTGCCTACCAAGCTAGTACTAGTTCTCTCCCGCCTAATCCACCACAGCTTCACGATTTCAGTCTCAACACCCCCATCTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

251

Amino Acids

29.46

Weight (kDa)

6.19

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3.1e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	82 - 169	3.6e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	617
AccI	GTMKAC	1 cut(s)	235
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	107, 207, 623
AfaI	GTAC	4 cut(s)	170, 212, 463, 688
AfiI	CCNNNNNNNGG	2 cut(s)	471, 617
AflII	CTTAAG	1 cut(s)	457
AflIII	ACRYGT	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	27, 265
AhlI	ACTAGT	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	9 cut(s)	77, 103, 315, 373, 413, 595, 643, 683, 718
AluI	AGCT	9 cut(s)	77, 103, 315, 373, 413, 595, 643, 683, 718
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	521, 553, 661
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	344, 632
AvaII	GGWCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	508, 565, 673
BccI	CCATC	2 cut(s)	507, 752
BciT130I	CCWGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	737
BcuI	ACTAGT	1 cut(s)	689
BfaI	CTAG	4 cut(s)	386, 414, 684, 690
BfmI	CTRYAG	2 cut(s)	172, 522
BfrI	CTTAAG	1 cut(s)	457
BglII	AGATCT	1 cut(s)	426
BisI	GCNGC	3 cut(s)	522, 554, 662
BlsI	GCNGC	3 cut(s)	523, 555, 663
BmcAI	AGTACT	2 cut(s)	170, 688
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	212, 570
BmrFI	CCNGG	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	523, 595
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	471, 617
Bse1I	ACTGG	2 cut(s)	157, 214
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	653
BseLI	CCNNNNNNNGG	2 cut(s)	471, 617
BseMII	CTCAG	5 cut(s)	261, 311, 332, 570, 680
BseNI	ACTGG	2 cut(s)	157, 214
BseRI	GAGGAG	3 cut(s)	383, 404, 596
BseXI	GCAGC	3 cut(s)	508, 565, 673
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	471, 617
BsmAI	GTCTC	1 cut(s)	737
BsmFI	GGGAC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	126, 282, 337, 426
BspACI	CCGC	1 cut(s)	701
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	262, 310, 333, 571, 679
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	212, 570
BspMAI	CTGCAG	2 cut(s)	176, 526
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	157, 214
BssMI	GATC	4 cut(s)	126, 282, 337, 426
BssNAI	GTATAC	1 cut(s)	236
Bst1107I	GTATAC	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	457
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	317, 645
BstDEI	CTNAG	5 cut(s)	270, 297, 341, 579, 666
BstF5I	GGATG	1 cut(s)	653
BstKTI	GATC	4 cut(s)	129, 285, 340, 429
BstMAI	GTCTC	1 cut(s)	737
BstMBI	GATC	4 cut(s)	126, 282, 337, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 321, 530, 592, 680
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	2 cut(s)	172, 522
BstV1I	GCAGC	3 cut(s)	508, 565, 673
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	2 cut(s)	337, 426
BstYI	RGATCY	2 cut(s)	337, 426
BstZ17I	GTATAC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	653
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	3 cut(s)	150, 181, 253
Cac8I	GCNNGC	2 cut(s)	317, 645
CciI	TCATGA	1 cut(s)	97
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	4 cut(s)	169, 211, 462, 687
CviAII	CATG	3 cut(s)	98, 190, 658
CviQI	GTAC	4 cut(s)	169, 211, 462, 687
DdeI	CTNAG	5 cut(s)	270, 297, 341, 579, 666
DpnI	GATC	4 cut(s)	128, 284, 339, 428
DpnII	GATC	4 cut(s)	126, 282, 337, 426
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	107, 207, 623
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	3 cut(s)	101, 193, 661
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	3 cut(s)	97, 189, 657
FauI	CCCGC	1 cut(s)	708
FblI	GTMKAC	1 cut(s)	235
Fnu4HI	GCNGC	3 cut(s)	522, 554, 662
FokI	GGATG	1 cut(s)	640
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	522, 554, 662
FspBI	CTAG	4 cut(s)	386, 414, 684, 690
GluI	GCNGC	3 cut(s)	522, 554, 662
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	132
Hin1II	CATG	3 cut(s)	101, 193, 661
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	94, 179, 392
HphI	GGTGA	2 cut(s)	344, 632
Hpy166II	GTNNAC	2 cut(s)	236, 400
Hpy188I	TCNGA	4 cut(s)	87, 342, 504, 580
Hpy188III	TCNNGA	5 cut(s)	98, 124, 286, 299, 722
Hpy8I	GTNNAC	2 cut(s)	236, 400
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	6 cut(s)	174, 319, 433, 524, 647, 661
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 321, 530, 592, 680
HpyF3I	CTNAG	5 cut(s)	270, 297, 341, 579, 666
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	101, 193, 661
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	126, 282, 337, 426
LmnI	GCTCC	3 cut(s)	370, 511, 583
Lsp1109I	GCAGC	3 cut(s)	508, 565, 673
LweI	GCATC	2 cut(s)	523, 595
MaeI	CTAG	4 cut(s)	386, 414, 684, 690
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	3 cut(s)	55, 176, 248
MalI	GATC	4 cut(s)	128, 284, 339, 428
MboI	GATC	4 cut(s)	126, 282, 337, 426
MboII	GAAGA	5 cut(s)	100, 103, 133, 169, 443
MflI	RGATCY	2 cut(s)	337, 426
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	198, 605
MlyI	GAGTC	3 cut(s)	88, 173, 401
MseI	TTAA	2 cut(s)	458, 507
MspCI	CTTAAG	1 cut(s)	457
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	5 cut(s)	109, 321, 530, 592, 680
NdeII	GATC	4 cut(s)	126, 282, 337, 426
NlaIII	CATG	3 cut(s)	101, 193, 661
NlaIV	GGNNCC	2 cut(s)	212, 570
NmuCI	GTSAC	3 cut(s)	55, 176, 248
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	3 cut(s)	523, 555, 663
PleI	GAGTC	3 cut(s)	88, 173, 400
PpsI	GAGTC	3 cut(s)	88, 173, 400
Ppu21I	YACGTR	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	212, 570
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	176, 526
PsuI	RGATCY	2 cut(s)	337, 426
RsaI	GTAC	4 cut(s)	170, 212, 463, 688
RsaNI	GTAC	4 cut(s)	169, 211, 462, 687
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	458, 507
SatI	GCNGC	3 cut(s)	522, 554, 662
Sau3AI	GATC	4 cut(s)	126, 282, 337, 426
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	2 cut(s)	170, 688
SchI	GAGTC	3 cut(s)	88, 173, 401
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	523, 595
SfcI	CTRYAG	2 cut(s)	172, 522
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	2 cut(s)	145, 457
SmoI	CTYRAG	2 cut(s)	145, 457
SpeI	ACTAGT	1 cut(s)	689
Sse9I	AATT	2 cut(s)	198, 605
SsiI	CCGC	1 cut(s)	701
SspMI	CTAG	4 cut(s)	386, 414, 684, 690
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	375, 589
TasI	AATT	2 cut(s)	198, 605
TatI	WGTACW	2 cut(s)	168, 686
Tru1I	TTAA	2 cut(s)	458, 507
Tru9I	TTAA	2 cut(s)	458, 507
TscAI	CASTG	3 cut(s)	157, 181, 253
TseFI	GTSAC	3 cut(s)	55, 176, 248
TseI	GCWGC	3 cut(s)	521, 553, 661
Tsp45I	GTSAC	3 cut(s)	55, 176, 248
TspDTI	ATGAA	2 cut(s)	434, 504
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	157, 181, 253
Van91I	CCANNNNNTGG	1 cut(s)	617
Vha464I	CTTAAG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	235
XspI	CTAG	4 cut(s)	386, 414, 684, 690
ZrmI	AGTACT	2 cut(s)	170, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.