Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Reverse (-)

6022993 .. 6025134

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G113500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGAAGGGGAAAGATAACAATTTCGAGGATAGAAAACCGAACCACAAGGCAAGTCACTTTTGCAAAACGGCGGGCTGGCCTGATCAAGAAGACTCATGAGCTTTCTGTGCTGTGTGATGCTCAGATCGGTCTTGTCATCTTCTCAAGCACTGGGAAGATGTTTCAGTACTGCAGTGAGTCTTCAAGCATGGAGGAGCTGATTCAAAGGTACCAGGTTGCTAGAGGGACTAGAATATTTCAACACAACGACACGGAATATATGAATGCTGAGCTGAGGAAAATGAGGAGAGAAACTCAGAGTCTGGAACTGAGCTTGCAACGCTACACTGGTGAGGACCTGAGCTGTGTGCGCTTTGAGGATCTGGTGGAGCTTGAGCACCAGCTAGAGGAGTCTGTTAACAGGGTTCGAGCTCGCAAGTTTGAGGTCTTGCAACAACAGATAGACAATCTTCGTGCAACGACCAAGAGGAGGGAGGAAGAAAATGAGCAACTATTCCATCTGATTAAGGCGCATCAAAACGCAGCATTTGGTCATGAGCAGGCCCATGAGGCAGAACAGGTGGAGAATCTGCAGATTCTACCAAAGTCTGAGGAACATCGACACGTACTGGATCAGTTCCCATTTGGTGGTGAAGAACAACCAAGCAGTGTGCTTAAGCTTGCCACACTGCCTCAGCCTCAGCCTCAGTTCAACCCCTATTCTCTCCAGCCTCCTCATCAGCCCAGCCTCCTTGATTTCAATCTCAGCGGCCGCTCTATATACGGTACGTACACCTATATAGTAATTCGAGCCTTCTCGATTAATCTCAGCCGCCTCTACCATTATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

278

Amino Acids

32.37

Weight (kDa)

7.8

Isoelectric Point (pI)

60.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	756
AciI	CCGC	4 cut(s)	73, 750, 754, 814
AclWI	GGATC	2 cut(s)	369, 621
AcoI	YGGCCR	1 cut(s)	751
AfaI	GTAC	5 cut(s)	170, 212, 609, 769, 773
AfiI	CCNNNNNNNGG	3 cut(s)	388, 471, 629
AflII	CTTAAG	1 cut(s)	656
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	5 cut(s)	186, 206, 242, 694, 742
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	9 cut(s)	103, 199, 274, 315, 345, 373, 385, 413, 661
AluI	AGCT	9 cut(s)	103, 199, 274, 315, 345, 373, 385, 413, 661
Alw21I	GWGCWC	2 cut(s)	381, 415
AlwI	GGATC	2 cut(s)	369, 621
AlwNI	CAGNNNCTG	1 cut(s)	304
AoxI	GGCC	3 cut(s)	79, 543, 751
ApeKI	GCWGC	1 cut(s)	524
AseI	ATTAAT	1 cut(s)	804
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	354, 514
AspS9I	GGNCC	2 cut(s)	337, 544
AsuHPI	GGTGA	2 cut(s)	344, 644
AvaII	GGWCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	415
BbsI	GAAGAC	2 cut(s)	98, 174
Bbv12I	GWGCWC	2 cut(s)	381, 415
BbvCI	CCTCAGC	3 cut(s)	275, 675, 681
BbvI	GCAGC	1 cut(s)	536
BccI	CCATC	1 cut(s)	507
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	84
BfaI	CTAG	4 cut(s)	222, 231, 386, 832
BfmI	CTRYAG	2 cut(s)	172, 572
BfrI	CTTAAG	1 cut(s)	656
BglI	GCCNNNNNGGC	1 cut(s)	551
BisI	GCNGC	4 cut(s)	525, 751, 754, 814
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	4 cut(s)	526, 752, 755, 815
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	337, 544
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	215
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	109, 523
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	2 cut(s)	98, 174
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	1 cut(s)	692
Bpu10I	CCTNAGC	4 cut(s)	275, 341, 675, 681
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	130, 395
BsaAI	YACGTR	2 cut(s)	607, 771
BsaBI	GATNNNNATC	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 471, 629
Bse1I	ACTGG	3 cut(s)	157, 334, 615
Bse8I	GATNNNNATC	1 cut(s)	741
BseBI	CCWGG	1 cut(s)	215
BseJI	GATNNNNATC	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	388, 471, 629
BseNI	ACTGG	3 cut(s)	157, 334, 615
BseRI	GAGGAG	5 cut(s)	209, 301, 404, 484, 705
BseX3I	CGGCCG	1 cut(s)	751
BseXI	GCAGC	1 cut(s)	536
BseYI	CCCAGC	1 cut(s)	725
Bsh1285I	CGRYCG	1 cut(s)	754
BshFI	GGCC	3 cut(s)	81, 545, 753
BshNI	GGYRCC	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	754
BsiHKAI	GWGCWC	2 cut(s)	381, 415
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	3 cut(s)	388, 471, 629
BsmFI	GGGAC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	81, 545, 753
Bsp1286I	GDGCHC	2 cut(s)	381, 415
Bsp143I	GATC	4 cut(s)	84, 126, 361, 613
Bsp1720I	GCTNAGC	1 cut(s)	270
BspACI	CCGC	4 cut(s)	73, 750, 754, 814
BspANI	GGCC	3 cut(s)	81, 545, 753
BspHI	TCATGA	2 cut(s)	97, 535
BspLI	GGNNCC	1 cut(s)	212
BspMAI	CTGCAG	2 cut(s)	176, 576
BspPI	GGATC	2 cut(s)	369, 621
BspT107I	GGYRCC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	656
BsrBI	CCGCTC	1 cut(s)	756
BsrI	ACTGG	3 cut(s)	157, 334, 615
BssMI	GATC	4 cut(s)	84, 126, 361, 613
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	767
BstAFI	CTTAAG	1 cut(s)	656
BstBAI	YACGTR	2 cut(s)	607, 771
BstC8I	GCNNGC	6 cut(s)	75, 79, 317, 415, 543, 663
BstHHI	GCGC	2 cut(s)	354, 514
BstKTI	GATC	4 cut(s)	87, 129, 364, 616
BstMBI	GATC	4 cut(s)	84, 126, 361, 613
BstMCI	CGRYCG	1 cut(s)	754
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 321, 351, 551
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	213
BstSFI	CTRYAG	2 cut(s)	172, 572
BstSNI	TACGTA	1 cut(s)	771
BstV1I	GCAGC	1 cut(s)	536
BstV2I	GAAGAC	2 cut(s)	98, 174
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	751
BsuRI	GGCC	3 cut(s)	81, 545, 753
BtsI	GCAGTG	3 cut(s)	181, 655, 668
BtsIMutI	CAGTG	5 cut(s)	150, 181, 327, 655, 668
Cac8I	GCNNGC	6 cut(s)	75, 79, 317, 415, 543, 663
CaiI	CAGNNNCTG	1 cut(s)	304
CciI	TCATGA	2 cut(s)	97, 535
CciNI	GCGGCCGC	1 cut(s)	751
CfoI	GCGC	2 cut(s)	354, 514
Cfr13I	GGNCC	2 cut(s)	337, 544
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	5 cut(s)	169, 211, 608, 768, 772
CviAII	CATG	4 cut(s)	98, 190, 536, 548
CviQI	GTAC	5 cut(s)	169, 211, 608, 768, 772
DpnI	GATC	4 cut(s)	86, 128, 363, 615
DpnII	GATC	4 cut(s)	84, 126, 361, 613
EaeI	YGGCCR	1 cut(s)	751
EagI	CGGCCG	1 cut(s)	751
Ecl136II	GAGCTC	1 cut(s)	413
EclXI	CGGCCG	1 cut(s)	751
Eco105I	TACGTA	1 cut(s)	771
Eco24I	GRGCYC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	337
Eco52I	CGGCCG	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	413
EcoICRI	GAGCTC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	415
FaeI	CATG	4 cut(s)	101, 193, 539, 551
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	4 cut(s)	97, 189, 535, 547
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	525, 751, 754, 814
FriOI	GRGCYC	1 cut(s)	415
Fsp4HI	GCNGC	4 cut(s)	525, 751, 754, 814
FspBI	CTAG	4 cut(s)	222, 231, 386, 832
GlaI	GCGC	2 cut(s)	353, 513
GluI	GCNGC	4 cut(s)	525, 751, 754, 814
GsaI	CCCAGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	692
HaeIII	GGCC	3 cut(s)	81, 545, 753
HhaI	GCGC	2 cut(s)	354, 514
Hin1II	CATG	4 cut(s)	101, 193, 539, 551
Hin6I	GCGC	2 cut(s)	352, 512
HinP1I	GCGC	2 cut(s)	352, 512
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	7 cut(s)	94, 179, 202, 301, 392, 568, 577
HpaI	GTTAAC	1 cut(s)	400
HphI	GGTGA	2 cut(s)	344, 644
Hpy166II	GTNNAC	2 cut(s)	400, 774
Hpy188I	TCNGA	4 cut(s)	126, 300, 504, 592
Hpy188III	TCNNGA	5 cut(s)	88, 98, 305, 536, 799
Hpy8I	GTNNAC	2 cut(s)	400, 774
HpyAV	CCTTC	1 cut(s)	805
HpyCH4III	ACNGT	1 cut(s)	767
HpyCH4IV	ACGT	2 cut(s)	606, 770
HpyCH4V	TGCA	6 cut(s)	65, 174, 319, 433, 458, 574
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 321, 351, 551
HpySE526I	ACGT	2 cut(s)	606, 770
Hsp92II	CATG	4 cut(s)	101, 193, 539, 551
HspAI	GCGC	2 cut(s)	352, 512
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	4 cut(s)	84, 126, 361, 613
LmnI	GCTCC	2 cut(s)	196, 370
Lsp1109I	GCAGC	1 cut(s)	536
LweI	GCATC	2 cut(s)	109, 523
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	4 cut(s)	222, 231, 386, 832
MaeII	ACGT	2 cut(s)	606, 770
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	86, 128, 363, 615
MbiI	CCGCTC	1 cut(s)	756
MboI	GATC	4 cut(s)	84, 126, 361, 613
MboII	GAAGA	7 cut(s)	103, 133, 169, 174, 443, 491, 647
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	2 cut(s)	381, 415
MluCI	AATT	2 cut(s)	21, 786
MlyI	GAGTC	4 cut(s)	88, 188, 310, 401
MseI	TTAA	4 cut(s)	399, 507, 657, 804
MspA1I	CMGCKG	1 cut(s)	750
MspCI	CTTAAG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	215
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	109, 321, 351, 551
NdeII	GATC	4 cut(s)	84, 126, 361, 613
NlaIII	CATG	4 cut(s)	101, 193, 539, 551
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	55
NotI	GCGGCCGC	1 cut(s)	751
PagI	TCATGA	2 cut(s)	97, 535
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	3 cut(s)	202, 568, 577
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	4 cut(s)	526, 752, 755, 815
PleI	GAGTC	4 cut(s)	88, 187, 309, 400
PpsI	GAGTC	4 cut(s)	88, 187, 309, 400
Ppu21I	YACGTR	2 cut(s)	607, 771
PpuMI	RGGWCCY	1 cut(s)	337
PshBI	ATTAAT	1 cut(s)	804
Psp124BI	GAGCTC	1 cut(s)	415
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	725
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	2 cut(s)	337, 544
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	2 cut(s)	176, 576
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	5 cut(s)	170, 212, 609, 769, 773
RsaNI	GTAC	5 cut(s)	169, 211, 608, 768, 772
SacI	GAGCTC	1 cut(s)	415
SaqAI	TTAA	4 cut(s)	399, 507, 657, 804
SatI	GCNGC	4 cut(s)	525, 751, 754, 814
Sau3AI	GATC	4 cut(s)	84, 126, 361, 613
Sau96I	GGNCC	2 cut(s)	337, 544
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	4 cut(s)	88, 188, 310, 401
ScrFI	CCNGG	1 cut(s)	215
SduI	GDGCHC	2 cut(s)	381, 415
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	2 cut(s)	109, 523
SfcI	CTRYAG	2 cut(s)	172, 572
SinI	GGWCC	1 cut(s)	337
SmlI	CTYRAG	3 cut(s)	145, 374, 656
SmoI	CTYRAG	3 cut(s)	145, 374, 656
SnaBI	TACGTA	1 cut(s)	771
Sse9I	AATT	2 cut(s)	21, 786
SsiI	CCGC	4 cut(s)	73, 750, 754, 814
SspI	AATATT	1 cut(s)	237
SspMI	CTAG	4 cut(s)	222, 231, 386, 832
SstI	GAGCTC	1 cut(s)	415
StyD4I	CCNGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	767
TaiI	ACGT	2 cut(s)	609, 773
TaqI	TCGA	5 cut(s)	26, 409, 601, 790, 800
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	2 cut(s)	21, 786
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	3 cut(s)	753, 756, 816
TfiI	GAWTC	3 cut(s)	202, 568, 577
Tru1I	TTAA	4 cut(s)	399, 507, 657, 804
Tru9I	TTAA	4 cut(s)	399, 507, 657, 804
TscAI	CASTG	5 cut(s)	157, 181, 334, 655, 675
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	524
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	5 cut(s)	157, 181, 334, 655, 675
Van91I	CCANNNNNTGG	1 cut(s)	629
Vha464I	CTTAAG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	337
VspI	ATTAAT	1 cut(s)	804
XspI	CTAG	4 cut(s)	222, 231, 386, 832
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.