Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Forward (+)

32779456 .. 32782866

Gene Structure 3411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1231100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGAAGGGGCAAGATAACAATTTCGAGGATAGAAAACAAAACCACAAGGCAAGTGACTTTTGCGAAACGGCGGGCAGGACTGATCAAGAAGACTCATGAGCTTTCTGTGCTATGTGATGCCCAGATTGGCCTTTTCATTTTCTCAAGCACTGGCAAGATGTTTCAGTACTGCAGTGAGGCATCAAGCGTGGATGAGCTTATTCAAAGGTACCAGGTTGCTAAAGGGATTCGAATACCGCAACACAATGACACGGAATATATGAATGCTGAGTTGGGAAAAATGAGGAGAGAAACTCACCATCTGGAATTAAGTTTGCAACGCTACACGGGCGAGGATCTAAGTTGCATTCGATTTGAAGATCTGGTGGAGCTTGAACACCAACTGGAGGCGTCTGTTAACAAGGTTCGAGCTAGGAAGTTTGAGGTCTTGCAACAGCAGATAGCCAATCTTCTTGCGACGACCAAAAGACGGGAGGAAGAAAATGAGAAACTATTCCATCTGATTAAGGCGCATCAGGCAGCAGCATTTGGTCATGATCTGCAGGCGCATAATGAGGCTCACGAGCAGTTGGAGAATCTGGAGATGATACGGAAATCTGAGGAGCACCGACACGTGCTCGATCAATTCCCATTTACAGGTGAAGAACAACCAAGCAGTGTACTTCAGCTAGCTACTTTGCAGCCTCAGCCTCAGTTCAACCTTTACCCTCACCAGCCTGCTCATCATCATCCCGGCCTTCTCGATTTCAACCTCAGCGGCCCCTCTATATACGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

260

Amino Acids

29.93

Weight (kDa)

6.47

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.3e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	81 - 167	2e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AciI	CCGC	3 cut(s)	73, 239, 759
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	1 cut(s)	650
AcvI	CACGTG	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	392
AfaI	GTAC	3 cut(s)	170, 212, 663
AfiI	CCNNNNNNNGG	3 cut(s)	388, 471, 638
AflIII	ACRYGT	1 cut(s)	613
AgsI	TTSAA	5 cut(s)	206, 359, 377, 700, 751
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	103, 199, 373, 413, 670, 674
AluI	AGCT	6 cut(s)	103, 199, 373, 413, 670, 674
Alw21I	GWGCWC	2 cut(s)	609, 621
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	3 cut(s)	130, 736, 760
ApeKI	GCWGC	3 cut(s)	521, 524, 682
Asp700I	GAANNNNTTC	1 cut(s)	494
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	514, 550
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	1 cut(s)	735
AsuHPI	GGTGA	3 cut(s)	290, 653, 704
AsuII	TTCGAA	1 cut(s)	232
AsuNHI	GCTAGC	1 cut(s)	670
BanI	GGYRCC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	563
BbrPI	CACGTG	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	609, 621
BbvCI	CCTCAGC	2 cut(s)	687, 755
BbvI	GCAGC	3 cut(s)	533, 536, 694
BccI	CCATC	2 cut(s)	309, 507
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	215
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	735
BfaI	CTAG	2 cut(s)	414, 671
BfmI	CTRYAG	2 cut(s)	172, 542
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	4 cut(s)	522, 525, 683, 760
BlsI	GCNGC	4 cut(s)	523, 526, 684, 761
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	215, 735
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	2 cut(s)	212, 763
BmrFI	CCNGG	2 cut(s)	215, 735
BmsI	GCATC	3 cut(s)	109, 191, 523
BmtI	GCTAGC	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	2 cut(s)	407, 602
Bpu10I	CCTNAGC	2 cut(s)	687, 755
Bpu14I	TTCGAA	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	735
BsaAI	YACGTR	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	3 cut(s)	388, 471, 638
Bse1I	ACTGG	2 cut(s)	157, 390
BseBI	CCWGG	1 cut(s)	215
BseGI	GGATG	2 cut(s)	199, 730
BseLI	CCNNNNNNNGG	3 cut(s)	388, 471, 638
BseMII	CTCAG	5 cut(s)	261, 591, 701, 707, 769
BseNI	ACTGG	2 cut(s)	157, 390
BseRI	GAGGAG	2 cut(s)	301, 617
BseXI	GCAGC	3 cut(s)	533, 536, 694
BshFI	GGCC	3 cut(s)	132, 738, 762
BshNI	GGYRCC	1 cut(s)	210
BsiHKAI	GWGCWC	2 cut(s)	609, 621
BsiSI	CCGG	1 cut(s)	735
BslI	CCNNNNNNNGG	3 cut(s)	388, 471, 638
BsmI	GAATGC	2 cut(s)	271, 348
BsnI	GGCC	3 cut(s)	132, 738, 762
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	609, 621
Bsp143I	GATC	5 cut(s)	84, 337, 361, 538, 622
BspACI	CCGC	3 cut(s)	73, 239, 759
BspANI	GGCC	3 cut(s)	132, 738, 762
BspCNI	CTCAG	5 cut(s)	262, 592, 700, 706, 768
BspHI	TCATGA	2 cut(s)	97, 535
BspLI	GGNNCC	2 cut(s)	212, 763
BspMAI	CTGCAG	2 cut(s)	176, 546
BspOI	GCTAGC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	157, 390
BssMI	GATC	5 cut(s)	84, 337, 361, 538, 622
BssNI	GRCGYC	1 cut(s)	392
BssSI	CACGAG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	563
Bst2UI	CCWGG	1 cut(s)	215
BstACI	GRCGYC	1 cut(s)	392
BstBAI	YACGTR	1 cut(s)	616
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	75, 546, 672, 720
BstDEI	CTNAG	6 cut(s)	270, 341, 600, 687, 693, 755
BstF5I	GGATG	2 cut(s)	199, 730
BstHHI	GCGC	2 cut(s)	514, 550
BstKTI	GATC	5 cut(s)	87, 340, 364, 541, 625
BstMBI	GATC	5 cut(s)	84, 337, 361, 538, 622
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 330, 518, 688
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	213, 733
BstSFI	CTRYAG	2 cut(s)	172, 542
BstV1I	GCAGC	3 cut(s)	533, 536, 694
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	2 cut(s)	337, 361
BstYI	RGATCY	2 cut(s)	337, 361
BsuRI	GGCC	3 cut(s)	132, 738, 762
BtsCI	GGATG	2 cut(s)	199, 730
BtsI	GCAGTG	2 cut(s)	181, 664
BtsIMutI	CAGTG	3 cut(s)	150, 181, 664
Cac8I	GCNNGC	4 cut(s)	75, 546, 672, 720
CciI	TCATGA	2 cut(s)	97, 535
CfoI	GCGC	2 cut(s)	514, 550
Cfr13I	GGNCC	1 cut(s)	761
CseI	GACGC	1 cut(s)	381
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	3 cut(s)	169, 211, 662
CviAII	CATG	2 cut(s)	98, 536
CviQI	GTAC	3 cut(s)	169, 211, 662
DdeI	CTNAG	6 cut(s)	270, 341, 600, 687, 693, 755
DpnI	GATC	5 cut(s)	86, 339, 363, 540, 624
DpnII	GATC	5 cut(s)	84, 337, 361, 538, 622
Eco57I	CTGAAG	1 cut(s)	650
Eco72I	CACGTG	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	2 cut(s)	101, 539
FaiI	YATR	8 cut(s)	99, 115, 261, 263, 537, 552, 770, 772
FatI	CATG	2 cut(s)	97, 535
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	4 cut(s)	522, 525, 683, 760
FokI	GGATG	2 cut(s)	206, 717
Fsp4HI	GCNGC	4 cut(s)	522, 525, 683, 760
FspBI	CTAG	2 cut(s)	414, 671
GlaI	GCGC	2 cut(s)	513, 549
GluI	GCNGC	4 cut(s)	522, 525, 683, 760
GsuI	CTGGAG	2 cut(s)	407, 602
HaeIII	GGCC	3 cut(s)	132, 738, 762
HapII	CCGG	1 cut(s)	735
HgaI	GACGC	1 cut(s)	381
HhaI	GCGC	2 cut(s)	514, 550
Hin1I	GRCGYC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	101, 539
Hin6I	GCGC	2 cut(s)	512, 548
HinP1I	GCGC	2 cut(s)	512, 548
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	94, 229, 577
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	1 cut(s)	735
HphI	GGTGA	3 cut(s)	290, 653, 704
Hpy166II	GTNNAC	2 cut(s)	400, 662
Hpy188I	TCNGA	2 cut(s)	504, 601
Hpy188III	TCNNGA	7 cut(s)	88, 98, 305, 536, 563, 581, 743
Hpy8I	GTNNAC	2 cut(s)	400, 662
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	749
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	6 cut(s)	174, 319, 348, 433, 544, 682
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 330, 518, 688
HpyF3I	CTNAG	6 cut(s)	270, 341, 600, 687, 693, 755
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	392
Hsp92II	CATG	2 cut(s)	101, 539
HspAI	GCGC	2 cut(s)	512, 548
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	84, 337, 361, 538, 622
LmnI	GCTCC	2 cut(s)	370, 604
Lsp1109I	GCAGC	3 cut(s)	533, 536, 694
LweI	GCATC	3 cut(s)	109, 191, 523
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	2 cut(s)	414, 671
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	5 cut(s)	86, 339, 363, 540, 624
MboI	GATC	5 cut(s)	84, 337, 361, 538, 622
MboII	GAAGA	5 cut(s)	103, 371, 443, 491, 656
MflI	RGATCY	2 cut(s)	337, 361
MhlI	GDGCHC	2 cut(s)	609, 621
MluCI	AATT	3 cut(s)	21, 308, 626
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	552
MroXI	GAANNNNTTC	1 cut(s)	494
MseI	TTAA	3 cut(s)	311, 399, 507
MspA1I	CMGCKG	1 cut(s)	759
MspI	CCGG	1 cut(s)	735
MspR9I	CCNGG	2 cut(s)	215, 735
Mva1269I	GAATGC	2 cut(s)	271, 348
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	109, 330, 518, 688
NciI	CCSGG	1 cut(s)	735
NdeII	GATC	5 cut(s)	84, 337, 361, 538, 622
NheI	GCTAGC	1 cut(s)	670
NlaIII	CATG	2 cut(s)	101, 539
NlaIV	GGNNCC	2 cut(s)	212, 763
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	232
PagI	TCATGA	2 cut(s)	97, 535
PctI	GAATGC	2 cut(s)	271, 348
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	229, 577
PkrI	GCNGC	4 cut(s)	523, 526, 684, 761
PleI	GAGTC	1 cut(s)	88
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	213
PspCI	CACGTG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	212, 763
PspPI	GGNCC	1 cut(s)	761
PstI	CTGCAG	2 cut(s)	176, 546
PsuI	RGATCY	2 cut(s)	337, 361
RsaI	GTAC	3 cut(s)	170, 212, 663
RsaNI	GTAC	3 cut(s)	169, 211, 662
SaqAI	TTAA	3 cut(s)	311, 399, 507
SatI	GCNGC	4 cut(s)	522, 525, 683, 760
Sau3AI	GATC	5 cut(s)	84, 337, 361, 538, 622
Sau96I	GGNCC	1 cut(s)	761
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	215, 735
SduI	GDGCHC	2 cut(s)	609, 621
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	3 cut(s)	109, 191, 523
SfcI	CTRYAG	2 cut(s)	172, 542
SfuI	TTCGAA	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	3 cut(s)	21, 308, 626
SsiI	CCGC	3 cut(s)	73, 239, 759
SspMI	CTAG	2 cut(s)	414, 671
StyD4I	CCNGG	2 cut(s)	213, 733
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	6 cut(s)	26, 232, 352, 409, 621, 744
TasI	AATT	3 cut(s)	21, 308, 626
TatI	WGTACW	2 cut(s)	168, 661
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	2 cut(s)	229, 577
Tru1I	TTAA	3 cut(s)	311, 399, 507
Tru9I	TTAA	3 cut(s)	311, 399, 507
TscAI	CASTG	3 cut(s)	157, 181, 664
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	521, 524, 682
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	127, 278
TspGWI	ACGGA	2 cut(s)	269, 607
TspRI	CASTG	3 cut(s)	157, 181, 664
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	2 cut(s)	414, 671
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.