Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000256.1

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Forward (+)

33346 .. 35819

Gene Structure 2474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000256.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgggtaggggaaagatacatatttcaaggatagagaaccgaaccaccaggcaagtgacttttgcgaaacgcagagctgggcttctgaagaagactcatgagctttctgtgctgtgtgatgtccagatcggccttgtcatcttctcaagcactgggaagatgtttcagtactgcagtgactcaacaagcatggaggaaattataagaaggtaccagtatgcttcagggacacgtataccacaacacagtgacacggactttttgaatgctgagataagaaagatcaggaaagaaactcaggacctccatttgagcttgcaacgctacaccggtgaggatctgagttctgtgcgatttgaggatttggaggagctcgaaaatcggctagaggagtctgtcaacagggttagagctaggaagattaaggagcatcaggctgcagtctttgctcatcagcaccattatcagcagcaaatggaaatggaaccgaaatctgaggagcatcgacagctaatggaacaattcccattctgtggtgaggaacagcctttgcttcagcttgcaactacatccatgcagcctcagtttgcctaccaagctagtactagttctctcccgcctaatccaccacagcttcacgatttcagtctcaacacccccatctatggtatacataaaccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

227

Amino Acids

26.43

Weight (kDa)

7.19

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	203
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	2 cut(s)	235, 670
AciI	CCGC	1 cut(s)	617
AclWI	GGATC	1 cut(s)	345
AcuI	CTGAAG	3 cut(s)	107, 207, 539
AfaI	GTAC	3 cut(s)	170, 212, 604
AfiI	CCNNNNNNNGG	2 cut(s)	533, 665
AflIII	ACRYGT	1 cut(s)	230
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	27, 265
AhlI	ACTAGT	1 cut(s)	605
AjnI	CCWGG	1 cut(s)	47
AluBI	AGCT	9 cut(s)	77, 103, 315, 373, 413, 511, 559, 599, 634
AluI	AGCT	9 cut(s)	77, 103, 315, 373, 413, 511, 559, 599, 634
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	1 cut(s)	345
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	3 cut(s)	437, 469, 577
AsiGI	ACCGGT	1 cut(s)	329
Asp718I	GGTACC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	344, 548
AvaII	GGWCC	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	375
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	424, 481, 589
BccI	CCATC	1 cut(s)	668
BciT130I	CCWGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	653
BcuI	ACTAGT	1 cut(s)	605
BfaI	CTAG	4 cut(s)	386, 414, 600, 606
BfmI	CTRYAG	2 cut(s)	172, 438
BisI	GCNGC	3 cut(s)	438, 470, 578
BlsI	GCNGC	3 cut(s)	439, 471, 579
BmcAI	AGTACT	2 cut(s)	170, 604
Bme1390I	CCNGG	1 cut(s)	49
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	212, 486
BmrFI	CCNGG	1 cut(s)	49
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	439, 511
BmuI	ACTGGG	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	130
BsaAI	YACGTR	1 cut(s)	233
BsaWI	WCCGGW	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 665
Bse118I	RCCGGY	1 cut(s)	329
Bse1I	ACTGG	2 cut(s)	157, 214
BseBI	CCWGG	1 cut(s)	49
BseGI	GGATG	1 cut(s)	569
BseLI	CCNNNNNNNGG	2 cut(s)	533, 665
BseMII	CTCAG	5 cut(s)	261, 311, 332, 486, 596
BseNI	ACTGG	2 cut(s)	157, 214
BseRI	GAGGAG	3 cut(s)	383, 404, 512
BseXI	GCAGC	3 cut(s)	424, 481, 589
BseYI	CCCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	210
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	330
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	533, 665
BsmAI	GTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	126, 282, 337
BspACI	CCGC	1 cut(s)	617
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	5 cut(s)	262, 310, 333, 487, 595
BspHI	TCATGA	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	212, 486
BspMAI	CTGCAG	2 cut(s)	176, 442
BspPI	GGATC	1 cut(s)	345
BspT107I	GGYRCC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	157, 214
BssAI	RCCGGY	1 cut(s)	329
BssMI	GATC	3 cut(s)	126, 282, 337
BssNAI	GTATAC	2 cut(s)	236, 671
Bst1107I	GTATAC	2 cut(s)	236, 671
Bst2UI	CCWGG	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	248
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	317, 561
BstDEI	CTNAG	5 cut(s)	270, 297, 341, 495, 582
BstF5I	GGATG	1 cut(s)	569
BstKTI	GATC	3 cut(s)	129, 285, 340
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	3 cut(s)	126, 282, 337
BstMWI	GCNNNNNNNGC	5 cut(s)	109, 321, 446, 508, 596
BstNI	CCWGG	1 cut(s)	49
BstSCI	CCNGG	1 cut(s)	47
BstSFI	CTRYAG	2 cut(s)	172, 438
BstV1I	GCAGC	3 cut(s)	424, 481, 589
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BstZ17I	GTATAC	2 cut(s)	236, 671
BsuRI	GGCC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	569
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	3 cut(s)	150, 181, 253
Cac8I	GCNNGC	2 cut(s)	317, 561
CciI	TCATGA	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	329
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	3 cut(s)	169, 211, 603
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	98, 190, 574
CviQI	GTAC	3 cut(s)	169, 211, 603
DdeI	CTNAG	5 cut(s)	270, 297, 341, 495, 582
DpnI	GATC	3 cut(s)	128, 284, 339
DpnII	GATC	3 cut(s)	126, 282, 337
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	107, 207, 539
EcoICRI	GAGCTC	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	3 cut(s)	101, 193, 577
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	3 cut(s)	97, 189, 573
FauI	CCCGC	1 cut(s)	624
FblI	GTMKAC	2 cut(s)	235, 670
Fnu4HI	GCNGC	3 cut(s)	438, 470, 578
FokI	GGATG	1 cut(s)	556
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	438, 470, 578
FspBI	CTAG	4 cut(s)	386, 414, 600, 606
GluI	GCNGC	3 cut(s)	438, 470, 578
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	330
Hin1II	CATG	3 cut(s)	101, 193, 577
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HinfI	GANTC	3 cut(s)	94, 179, 392
HpaII	CCGG	1 cut(s)	330
HphI	GGTGA	2 cut(s)	344, 548
Hpy166II	GTNNAC	3 cut(s)	236, 400, 671
Hpy188I	TCNGA	3 cut(s)	87, 342, 496
Hpy188III	TCNNGA	5 cut(s)	98, 124, 286, 299, 638
Hpy8I	GTNNAC	3 cut(s)	236, 400, 671
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	174, 319, 440, 563, 577
HpyF10VI	GCNNNNNNNGC	5 cut(s)	109, 321, 446, 508, 596
HpyF3I	CTNAG	5 cut(s)	270, 297, 341, 495, 582
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	101, 193, 577
KpnI	GGTACC	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	126, 282, 337
LmnI	GCTCC	3 cut(s)	370, 427, 499
Lsp1109I	GCAGC	3 cut(s)	424, 481, 589
LweI	GCATC	2 cut(s)	439, 511
MaeI	CTAG	4 cut(s)	386, 414, 600, 606
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	3 cut(s)	55, 176, 248
MalI	GATC	3 cut(s)	128, 284, 339
MboI	GATC	3 cut(s)	126, 282, 337
MboII	GAAGA	5 cut(s)	100, 103, 133, 169, 430
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	198, 521
MlyI	GAGTC	3 cut(s)	88, 173, 401
MnlI	CCTC	9 cut(s)	187, 314, 328, 352, 361, 382, 490, 532, 591
MseI	TTAA	1 cut(s)	423
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	5 cut(s)	109, 321, 446, 508, 596
NdeII	GATC	3 cut(s)	126, 282, 337
NlaIII	CATG	3 cut(s)	101, 193, 577
NlaIV	GGNNCC	2 cut(s)	212, 486
NmuCI	GTSAC	3 cut(s)	55, 176, 248
PagI	TCATGA	1 cut(s)	97
PctI	GAATGC	1 cut(s)	271
PflMI	CCANNNNNTGG	1 cut(s)	533
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	439, 471, 579
PleI	GAGTC	3 cut(s)	88, 173, 400
PpsI	GAGTC	3 cut(s)	88, 173, 400
Ppu21I	YACGTR	1 cut(s)	233
PpuMI	RGGWCCY	1 cut(s)	301
PsiI	TTATAA	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	375
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	47
PspFI	CCCAGC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	212, 486
PspPI	GGNCC	1 cut(s)	301
PspPPI	RGGWCCY	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	176, 442
PsuI	RGATCY	1 cut(s)	337
RsaI	GTAC	3 cut(s)	170, 212, 604
RsaNI	GTAC	3 cut(s)	169, 211, 603
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	3 cut(s)	438, 470, 578
Sau3AI	GATC	3 cut(s)	126, 282, 337
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	2 cut(s)	170, 604
SchI	GAGTC	3 cut(s)	88, 173, 401
ScrFI	CCNGG	1 cut(s)	49
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	439, 511
SfcI	CTRYAG	2 cut(s)	172, 438
SgrAI	CRCCGGYG	1 cut(s)	329
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SpeI	ACTAGT	1 cut(s)	605
Sse9I	AATT	2 cut(s)	198, 521
SsiI	CCGC	1 cut(s)	617
SspMI	CTAG	4 cut(s)	386, 414, 600, 606
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	375, 505
TasI	AATT	2 cut(s)	198, 521
TatI	WGTACW	2 cut(s)	168, 602
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	3 cut(s)	157, 181, 253
TseFI	GTSAC	3 cut(s)	55, 176, 248
TseI	GCWGC	3 cut(s)	437, 469, 577
Tsp45I	GTSAC	3 cut(s)	55, 176, 248
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	3 cut(s)	157, 181, 253
Van91I	CCANNNNNTGG	1 cut(s)	533
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	2 cut(s)	235, 670
XspI	CTAG	4 cut(s)	386, 414, 600, 606
ZrmI	AGTACT	2 cut(s)	170, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.