Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Forward (+)

22556198 .. 22558724

Gene Structure 2527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGAAGGGGCAAGATAACAATTTCGAGGATACAAAACAAAACCACAAGGCAAGTGACTTTTGCGAAACGGCGGGCAGGACTGATCAAGAAGACTCATGAGCTTTCTGTGCTATGTGATGCCCAGATCGGCCTTTTCATTTTCTCAAGCACTGGCAAGATGTTTCGGTACTGCAGTGAGGCATCAAGCGTGGAGGAGCTTATTCAAAGGTACCAGGTTGCTAAAGGGATTCGAATACCGCAACACAACGACACGGTATATGCACCCAGTGATTATGAATATATGAATGCTGAGTTGGGAAAAATGAGGAGAGAAACTCACCATCTGGAATTAAGTTTGCAACGCTACACGGGCGAGGATCTAAATTGCGTTCGATTTGAAGATCTGGTGGAGCTTGAACACCAACTGGAGGCGTCTGTTAACAAGGTTCGAGCTAGGAAGATTAAGGCGCATCGGGCAGCAGCATTTGGTCATGATCTGCAGGCGCATCATGAGGCTCACGAGCAGTTGGAGAATCTGGAGATGATACCGAAATCTGAGGAGCACCGACACGTGCTCGATCAATTCCCATTTGCAGGTGAAGAACAACCAAGCAGTGTGCTTCAGCTAGCCACTTTGCAGCCTCAGCCTCAGTTCAACCCTTACCCTCACGAGCCTGCTCATCATCATCCCGGCCTTCTCGATTTCAACCTCAGCGGCCCCTCTATATACGGTATACGTATATATACAGCAGTTATACATATTATATATTTGATCGATCCACACAAAGTGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

260

Amino Acids

29.79

Weight (kDa)

7.02

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8.2e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 150	2.2e-13	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	715
AciI	CCGC	3 cut(s)	73, 239, 696
AclWI	GGATC	2 cut(s)	366, 752
AcuI	CTGAAG	1 cut(s)	587
AcvI	CACGTG	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	413
AdeI	CACNNNGTG	2 cut(s)	269, 769
AfaI	GTAC	2 cut(s)	170, 212
AfiI	CCNNNNNNNGG	2 cut(s)	409, 575
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	5 cut(s)	206, 380, 398, 637, 688
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	5 cut(s)	103, 199, 394, 434, 607
AluI	AGCT	5 cut(s)	103, 199, 394, 434, 607
Alw21I	GWGCWC	2 cut(s)	546, 558
AlwI	GGATC	2 cut(s)	366, 752
AoxI	GGCC	3 cut(s)	130, 673, 697
ApeKI	GCWGC	3 cut(s)	458, 461, 619
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	451, 487
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	2 cut(s)	311, 590
AsuII	TTCGAA	1 cut(s)	232
AsuNHI	GCTAGC	1 cut(s)	607
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BanI	GGYRCC	1 cut(s)	210
BauI	CACGAG	2 cut(s)	500, 650
BbrPI	CACGTG	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	546, 558
BbvCI	CCTCAGC	2 cut(s)	624, 692
BbvI	GCAGC	3 cut(s)	470, 473, 631
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	672
BfaI	CTAG	2 cut(s)	435, 608
BfmI	CTRYAG	2 cut(s)	172, 479
BfuAI	ACCTGC	1 cut(s)	566
BfuI	GTATCC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	459, 462, 620, 697
BlsI	GCNGC	4 cut(s)	460, 463, 621, 698
Bme1390I	CCNGG	2 cut(s)	215, 672
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	2 cut(s)	212, 700
BmrFI	CCNGG	2 cut(s)	215, 672
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	4 cut(s)	109, 191, 460, 496
BmtI	GCTAGC	1 cut(s)	611
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
BpmI	CTGGAG	2 cut(s)	428, 539
Bpu10I	CCTNAGC	2 cut(s)	624, 692
Bpu14I	TTCGAA	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	756
BsaAI	YACGTR	2 cut(s)	553, 719
BsaHI	GRCGYC	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 575
Bse1I	ACTGG	3 cut(s)	157, 267, 411
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	756
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	2 cut(s)	409, 575
BseMII	CTCAG	5 cut(s)	282, 528, 638, 644, 706
BseNI	ACTGG	3 cut(s)	157, 267, 411
BseRI	GAGGAG	3 cut(s)	209, 322, 554
BseXI	GCAGC	3 cut(s)	470, 473, 631
BshFI	GGCC	3 cut(s)	132, 675, 699
BshNI	GGYRCC	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	756
BsiHKAI	GWGCWC	2 cut(s)	546, 558
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	2 cut(s)	409, 575
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	132, 675, 699
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	546, 558
Bsp143I	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
BspACI	CCGC	3 cut(s)	73, 239, 696
BspANI	GGCC	3 cut(s)	132, 675, 699
BspCNI	CTCAG	5 cut(s)	283, 529, 637, 643, 705
BspDI	ATCGAT	1 cut(s)	756
BspHI	TCATGA	3 cut(s)	97, 472, 490
BspLI	GGNNCC	2 cut(s)	212, 700
BspMAI	CTGCAG	2 cut(s)	176, 483
BspMI	ACCTGC	1 cut(s)	566
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	366, 752
BspT104I	TTCGAA	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	157, 267, 411
BssMI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
BssNAI	GTATAC	1 cut(s)	716
BssNI	GRCGYC	1 cut(s)	413
BssSI	CACGAG	2 cut(s)	500, 650
Bst1107I	GTATAC	1 cut(s)	716
Bst2BI	CACGAG	2 cut(s)	500, 650
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	256, 713
BstACI	GRCGYC	1 cut(s)	413
BstBAI	YACGTR	2 cut(s)	553, 719
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	75, 483, 609, 657
BstDEI	CTNAG	5 cut(s)	291, 537, 624, 630, 692
BstF5I	GGATG	1 cut(s)	667
BstHHI	GCGC	2 cut(s)	451, 487
BstKTI	GATC	8 cut(s)	87, 129, 361, 385, 478, 562, 756, 760
BstMBI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 351, 455, 625
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	213, 670
BstSFI	CTRYAG	2 cut(s)	172, 479
BstSNI	TACGTA	1 cut(s)	719
BstV1I	GCAGC	3 cut(s)	470, 473, 631
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	2 cut(s)	358, 382
BstYI	RGATCY	2 cut(s)	358, 382
BstZ17I	GTATAC	1 cut(s)	716
Bsu15I	ATCGAT	1 cut(s)	756
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	132, 675, 699
BsuTUI	ATCGAT	1 cut(s)	756
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	2 cut(s)	181, 601
BtsIMutI	CAGTG	4 cut(s)	150, 181, 274, 601
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	4 cut(s)	75, 483, 609, 657
CciI	TCATGA	3 cut(s)	97, 472, 490
CfoI	GCGC	2 cut(s)	451, 487
Cfr13I	GGNCC	1 cut(s)	698
ClaI	ATCGAT	1 cut(s)	756
CseI	GACGC	1 cut(s)	402
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	169, 211
CviAII	CATG	3 cut(s)	98, 473, 491
CviQI	GTAC	2 cut(s)	169, 211
DdeI	CTNAG	5 cut(s)	291, 537, 624, 630, 692
DpnI	GATC	8 cut(s)	86, 128, 360, 384, 477, 561, 755, 759
DpnII	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
DraIII	CACNNNGTG	2 cut(s)	269, 769
Eco105I	TACGTA	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	587
Eco72I	CACGTG	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	101, 476, 494
FatI	CATG	3 cut(s)	97, 472, 490
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	459, 462, 620, 697
FokI	GGATG	1 cut(s)	654
Fsp4HI	GCNGC	4 cut(s)	459, 462, 620, 697
FspBI	CTAG	2 cut(s)	435, 608
GlaI	GCGC	2 cut(s)	450, 486
GluI	GCNGC	4 cut(s)	459, 462, 620, 697
GsuI	CTGGAG	2 cut(s)	428, 539
HaeIII	GGCC	3 cut(s)	132, 675, 699
HapII	CCGG	1 cut(s)	672
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	451, 487
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	101, 476, 494
Hin6I	GCGC	2 cut(s)	449, 485
HinP1I	GCGC	2 cut(s)	449, 485
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	94, 229, 514
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	2 cut(s)	311, 590
Hpy166II	GTNNAC	2 cut(s)	421, 716
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	9 cut(s)	88, 98, 326, 473, 491, 500, 518, 650, 680
Hpy8I	GTNNAC	2 cut(s)	421, 716
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	2 cut(s)	256, 713
HpyCH4IV	ACGT	2 cut(s)	552, 718
HpyCH4V	TGCA	6 cut(s)	174, 263, 340, 481, 575, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 351, 455, 625
HpyF3I	CTNAG	5 cut(s)	291, 537, 624, 630, 692
HpySE526I	ACGT	2 cut(s)	552, 718
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	3 cut(s)	101, 476, 494
HspAI	GCGC	2 cut(s)	449, 485
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
LmnI	GCTCC	3 cut(s)	196, 391, 541
Lsp1109I	GCAGC	3 cut(s)	470, 473, 631
LweI	GCATC	4 cut(s)	109, 191, 460, 496
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	2 cut(s)	435, 608
MaeII	ACGT	2 cut(s)	552, 718
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	8 cut(s)	86, 128, 360, 384, 477, 561, 755, 759
MboI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
MboII	GAAGA	4 cut(s)	103, 392, 451, 593
MflI	RGATCY	2 cut(s)	358, 382
MhlI	GDGCHC	2 cut(s)	546, 558
MluCI	AATT	5 cut(s)	21, 329, 364, 563, 775
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	489
MseI	TTAA	5 cut(s)	332, 420, 444, 774, 778
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	2 cut(s)	215, 672
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	109, 351, 455, 625
NciI	CCSGG	1 cut(s)	672
NdeII	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	101, 476, 494
NlaIV	GGNNCC	2 cut(s)	212, 700
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	232
PacI	TTAATTAA	1 cut(s)	778
PagI	TCATGA	3 cut(s)	97, 472, 490
PaqCI	CACCTGC	1 cut(s)	566
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	229, 514
PkrI	GCNGC	4 cut(s)	460, 463, 621, 698
PleI	GAGTC	1 cut(s)	88
PmaCI	CACGTG	1 cut(s)	553
PmlI	CACGTG	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	2 cut(s)	553, 719
Psp6I	CCWGG	1 cut(s)	213
PspCI	CACGTG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	212, 700
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	2 cut(s)	176, 483
PsuI	RGATCY	2 cut(s)	358, 382
RsaI	GTAC	2 cut(s)	170, 212
RsaNI	GTAC	2 cut(s)	169, 211
SaqAI	TTAA	5 cut(s)	332, 420, 444, 774, 778
SatI	GCNGC	4 cut(s)	459, 462, 620, 697
Sau3AI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	215, 672
SduI	GDGCHC	2 cut(s)	546, 558
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	109, 191, 460, 496
SfcI	CTRYAG	2 cut(s)	172, 479
SfuI	TTCGAA	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SnaBI	TACGTA	1 cut(s)	719
Sse9I	AATT	5 cut(s)	21, 329, 364, 563, 775
SsiI	CCGC	3 cut(s)	73, 239, 696
SspMI	CTAG	2 cut(s)	435, 608
StyD4I	CCNGG	2 cut(s)	213, 670
TaaI	ACNGT	2 cut(s)	256, 713
TaiI	ACGT	2 cut(s)	555, 721
TaqI	TCGA	7 cut(s)	26, 232, 373, 430, 558, 681, 756
TasI	AATT	5 cut(s)	21, 329, 364, 563, 775
TauI	GCSGC	1 cut(s)	699
TfiI	GAWTC	2 cut(s)	229, 514
Tru1I	TTAA	5 cut(s)	332, 420, 444, 774, 778
Tru9I	TTAA	5 cut(s)	332, 420, 444, 774, 778
TscAI	CASTG	4 cut(s)	157, 181, 274, 601
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	458, 461, 619
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	127, 291, 299
TspRI	CASTG	4 cut(s)	157, 181, 274, 601
XmiI	GTMKAC	1 cut(s)	715
XspI	CTAG	2 cut(s)	435, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.