FvH4_3g12640

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011035
Physical Location & Seq
Reverse (-)
7540382 .. 7542278
1897 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12640.t1

Sequence Viewer

Length: 642 bp
ATGAGCTTGATCTTGAGACTAAGGAATCATTTGCCTAATGGGCTTTGCAGAAGACCCTTTATCTCTGCACTCGGAACACTGAATCCGGGTGGTTTAAATGGGTTTTATCAGAGCTTTAGTCAGCCTGCAAGGAAAGAAGAGGAGGAGGAAGAAGTGGAGTATGATCAGAGGAGACTCCCGGCTGATTATGATCCAGCAACGTTTGATCCTACAGAGCATTGTAGTCCTCCCACGGAGCGTGTATTTAGGCTCGTAGATGAAATATCATCTCTCACACTGGCTGAAGTTGCTGAACTAGGTTTGATTATCATGAAGAAAAAGGGAATGAAGATGCCACCTACTGTGGGAGTCATGAAGCCAGGAGCTGCTGCAATAGGATTGGCAATGAAAGGACCAGCAGCAGCTAAGGAGGAGAAGAAAGTAGAAAAGACTGTATTTGAATTGAAGTTGGAGTCCTTTGAGGCAGCTTCGAAAATAAAACTGATCAAGGAGGTAAGGAGCTTCACTGATTTAGGCCTCAAGGAAGCAAAGGATTTAGTGGAGAAGGCACCATCGGTGTTAAAGGCAGGCGTGTCAAAGGAGGAAGGAGAGCAACTCGTAGAGAAGTTGAAAGCTCTTGGAGCGAAAGTTGTTCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

214

Amino Acids

23.42

Weight (kDa)

6.79

Isoelectric Point (pI)

53.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 146 - 212 9.5e-22 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 547
AclI AACGTT 1 cut(s) 200
AclWI GGATC 2 cut(s) 185, 200
AcuI CTGAAG 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 3 cut(s) 440, 445, 610
AjnI CCWGG 1 cut(s) 358
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 7 cut(s) 6, 114, 365, 404, 467, 501, 614
AluI AGCT 7 cut(s) 6, 114, 365, 404, 467, 501, 614
Alw26I GTCTC 2 cut(s) 10, 166
AlwI GGATC 2 cut(s) 185, 200
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 1 cut(s) 514
ApeKI GCWGC 5 cut(s) 365, 368, 398, 401, 464
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 2 cut(s) 87, 179
AsuII TTCGAA 1 cut(s) 470
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 1 cut(s) 547
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 5 cut(s) 352, 355, 410, 413, 476
BccI CCATC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 360
BclI TGATCA 2 cut(s) 163, 483
BcnI CCSGG 2 cut(s) 87, 179
BcoDI GTCTC 2 cut(s) 10, 166
BfaI CTAG 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 40
BisI GCNGC 5 cut(s) 366, 369, 399, 402, 465
BlsI GCNGC 5 cut(s) 367, 370, 400, 403, 466
Bme1390I CCNGG 3 cut(s) 87, 179, 360
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 1 cut(s) 549
BmrFI CCNGG 3 cut(s) 87, 179, 360
BmsI GCATC 1 cut(s) 321
BpiI GAAGAC 1 cut(s) 58
BplI GAGNNNNNCTC 2 cut(s) 579, 611
Bpu10I CCTNAGC 1 cut(s) 405
Bpu14I TTCGAA 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 34, 503
BpuMI CCSGG 2 cut(s) 87, 179
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 231
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 4 cut(s) 155, 158, 184, 425
BseXI GCAGC 5 cut(s) 352, 355, 410, 413, 476
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 516
BshNI GGYRCC 1 cut(s) 547
BsiSI CCGG 2 cut(s) 86, 179
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 2 cut(s) 10, 166
BsnI GGCC 1 cut(s) 516
Bsp119I TTCGAA 1 cut(s) 470
Bsp143I GATC 5 cut(s) 9, 163, 190, 205, 483
BspANI GGCC 1 cut(s) 516
BspHI TCATGA 2 cut(s) 309, 351
BspLI GGNNCC 1 cut(s) 549
BspPI GGATC 2 cut(s) 185, 200
BspT104I TTCGAA 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 5 cut(s) 9, 163, 190, 205, 483
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 343, 433
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 2 cut(s) 126, 568
BstDEI CTNAG 2 cut(s) 20, 405
BstDSI CCRYGG 1 cut(s) 231
BstKTI GATC 5 cut(s) 12, 166, 193, 208, 486
BstMAI GTCTC 2 cut(s) 10, 166
BstMBI GATC 5 cut(s) 9, 163, 190, 205, 483
BstMWI GCNNNNNNNGC 3 cut(s) 40, 287, 620
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 3 cut(s) 85, 177, 358
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 5 cut(s) 352, 355, 410, 413, 476
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 231
BtsIMutI CAGTG 3 cut(s) 77, 275, 504
Cac8I GCNNGC 2 cut(s) 126, 568
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 2 cut(s) 309, 351
Cfr13I GGNCC 1 cut(s) 392
CviAII CATG 2 cut(s) 310, 352
DdeI CTNAG 2 cut(s) 20, 405
DpnI GATC 5 cut(s) 11, 165, 192, 207, 485
DpnII GATC 5 cut(s) 9, 163, 190, 205, 483
DraI TTTAAA 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 2 cut(s) 313, 355
FaiI YATR 4 cut(s) 162, 189, 311, 353
FalI AAGNNNNNCTT 1 cut(s) 618
FatI CATG 2 cut(s) 309, 351
FbaI TGATCA 2 cut(s) 163, 483
Fnu4HI GCNGC 5 cut(s) 366, 369, 399, 402, 465
Fsp4HI GCNGC 5 cut(s) 366, 369, 399, 402, 465
FspBI CTAG 1 cut(s) 296
GluI GCNGC 5 cut(s) 366, 369, 399, 402, 465
HaeIII GGCC 1 cut(s) 516
HapII CCGG 2 cut(s) 86, 179
Hin1II CATG 2 cut(s) 313, 355
HinfI GANTC 5 cut(s) 25, 82, 174, 348, 452
HpaII CCGG 2 cut(s) 86, 179
Hpy188I TCNGA 3 cut(s) 74, 111, 168
Hpy188III TCNNGA 4 cut(s) 13, 310, 352, 635
HpyAV CCTTC 2 cut(s) 538, 578
HpyCH4III ACNGT 2 cut(s) 343, 433
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 4 cut(s) 48, 68, 128, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 287, 620
HpyF3I CTNAG 2 cut(s) 20, 405
HpySE526I ACGT 1 cut(s) 200
Hsp92II CATG 2 cut(s) 313, 355
Ksp22I TGATCA 2 cut(s) 163, 483
Kzo9I GATC 5 cut(s) 9, 163, 190, 205, 483
LmnI GCTCC 4 cut(s) 235, 362, 498, 620
LpnPI CCDG 9 cut(s) 99, 138, 192, 207, 263, 345, 372, 408, 552
Lsp1109I GCAGC 5 cut(s) 352, 355, 410, 413, 476
LweI GCATC 1 cut(s) 321
MaeI CTAG 1 cut(s) 296
MaeII ACGT 1 cut(s) 200
MalI GATC 5 cut(s) 11, 165, 192, 207, 485
MboI GATC 5 cut(s) 9, 163, 190, 205, 483
MboII GAAGA 6 cut(s) 63, 149, 161, 325, 340, 427
MluCI AATT 1 cut(s) 440
MlyI GAGTC 3 cut(s) 168, 357, 461
MmeI TCCRAC 1 cut(s) 429
MseI TTAA 2 cut(s) 95, 560
MspI CCGG 2 cut(s) 86, 179
MspR9I CCNGG 3 cut(s) 87, 179, 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 3 cut(s) 40, 287, 620
NciI CCSGG 2 cut(s) 87, 179
NdeII GATC 5 cut(s) 9, 163, 190, 205, 483
NlaIII CATG 2 cut(s) 313, 355
NlaIV GGNNCC 1 cut(s) 549
NspV TTCGAA 1 cut(s) 470
PagI TCATGA 2 cut(s) 309, 351
PceI AGGCCT 1 cut(s) 516
PfeI GAWTC 2 cut(s) 25, 82
PkrI GCNGC 5 cut(s) 367, 370, 400, 403, 466
PleI GAGTC 3 cut(s) 168, 356, 460
PpsI GAGTC 3 cut(s) 168, 356, 460
Psp1406I AACGTT 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 1 cut(s) 549
PspPI GGNCC 1 cut(s) 392
PstNI CAGNNNCTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 95, 560
SatI GCNGC 5 cut(s) 366, 369, 399, 402, 465
Sau3AI GATC 5 cut(s) 9, 163, 190, 205, 483
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 3 cut(s) 168, 357, 461
ScrFI CCNGG 3 cut(s) 87, 179, 360
SfaNI GCATC 1 cut(s) 321
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 3 cut(s) 13, 518, 635
SmoI CTYRAG 3 cut(s) 13, 518, 635
Sse9I AATT 1 cut(s) 440
SseBI AGGCCT 1 cut(s) 516
SspMI CTAG 1 cut(s) 296
StuI AGGCCT 1 cut(s) 516
StyD4I CCNGG 3 cut(s) 85, 177, 358
TaaI ACNGT 2 cut(s) 343, 433
TaiI ACGT 1 cut(s) 203
TaqI TCGA 1 cut(s) 470
TasI AATT 1 cut(s) 440
TfiI GAWTC 2 cut(s) 25, 82
Tru1I TTAA 2 cut(s) 95, 560
Tru9I TTAA 2 cut(s) 95, 560
TscAI CASTG 3 cut(s) 84, 282, 511
TseI GCWGC 5 cut(s) 365, 368, 398, 401, 464
TspDTI ATGAA 5 cut(s) 273, 326, 341, 368, 401
TspGWI ACGGA 1 cut(s) 248
TspRI CASTG 3 cut(s) 84, 282, 511
VpaK11BI GGWCC 1 cut(s) 392
XspI CTAG 1 cut(s) 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.