Rw5G013430

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011035
Physical Location & Seq
Reverse (-)
15778489 .. 15779130
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013430.1

Sequence Viewer

Length: 642 bp
ATGAGCTTGATCGTAAGACTAAGGAATCATTTACCTAATGGGCTTTGCAGAAGACCCTTTATTTCTCCCCTCGGAGCACTGAATCCGGGTAGCTTAAATGGGTTTTACCAGAACTTTAGTCAACCTGCAAGGAAAGAAGAGGAGGAGGAAGAAGTGGAGATTGATCAAAGGAGACTCCCAGCTGATTACGATCCGGCAACTTTTGATCCTACAGAGCATCGCAGTCCTCCCACGGAGCGTGTATTTAGGCTCGTAGATGAAATATCATCACTCACACTTTCTGAAGTTGCTGAGCTGGGTTCGATCATTATGAAGAAAAAGGGACTGAAGGTACCACCAACTGTGGGAGTCATGAAGCCAGGAGCTGCTGCAATAGGATTGGCAATGAAGGGACCAGCAGCGGCTAAGGAGGAAAAGAAAGTAGAAAAGACCGTATTCGAATTAAAGTTAGAGTCCTTTGAGGCGGCTTCAAAAATAAAACTGATCAAGGAGGTAAGGAGCTTCACTGATTTGGGCCTCAAGGAAGCAAAGGATTTAGTGGAGAAGGCACCATCCGTGTTAAAGGCCGGTGTGTCAAAGGAGGAAGGAGAGCAACTTGTAGAGAAGCTGAAAGCTCTTGGAGCGAAAGTTGTTCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

213

Amino Acids

23.4

Weight (kDa)

7.76

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 146 - 212 9.5e-22 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
Acc65I GGTACC 1 cut(s) 331
AccB1I GGYRCC 2 cut(s) 331, 547
AciI CCGC 2 cut(s) 401, 464
AclWI GGATC 2 cut(s) 185, 200
AcuI CTGAAG 2 cut(s) 303, 347
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 1 cut(s) 471
AjnI CCWGG 1 cut(s) 358
AluBI AGCT 8 cut(s) 6, 93, 182, 295, 365, 501, 607, 614
AluI AGCT 8 cut(s) 6, 93, 182, 295, 365, 501, 607, 614
Alw21I GWGCWC 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 166
AlwI GGATC 2 cut(s) 185, 200
AlwNI CAGNNNCTG 1 cut(s) 365
AoxI GGCC 2 cut(s) 514, 564
ApeKI GCWGC 3 cut(s) 365, 368, 398
Asp718I GGTACC 1 cut(s) 331
AspS9I GGNCC 2 cut(s) 392, 514
AsuC2I CCSGG 1 cut(s) 87
AsuII TTCGAA 1 cut(s) 438
AvaII GGWCC 1 cut(s) 392
BanI GGYRCC 2 cut(s) 331, 547
BbsI GAAGAC 1 cut(s) 58
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 352, 355, 410
BccI CCATC 1 cut(s) 559
BciT130I CCWGG 1 cut(s) 360
BclI TGATCA 2 cut(s) 163, 483
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 166
BfmI CTRYAG 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 5 cut(s) 366, 369, 399, 402, 465
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 5 cut(s) 367, 370, 400, 403, 466
Bme1390I CCNGG 2 cut(s) 87, 360
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 392, 514
BmiI GGNNCC 3 cut(s) 333, 393, 549
BmrFI CCNGG 2 cut(s) 87, 360
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 405
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 503
BpuMI CCSGG 1 cut(s) 87
BsaBI GATNNNNATC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 70, 231
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 566
Bse3DI GCAATG 1 cut(s) 390
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 2 cut(s) 70, 231
BseGI GGATG 1 cut(s) 551
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 155, 158
BseXI GCAGC 3 cut(s) 352, 355, 410
BseYI CCCAGC 2 cut(s) 178, 295
BshFI GGCC 2 cut(s) 516, 566
BshNI GGYRCC 2 cut(s) 331, 547
BsiHKAI GWGCWC 1 cut(s) 79
BsiSI CCGG 3 cut(s) 86, 194, 567
BslFI GGGAC 2 cut(s) 336, 405
BslI CCNNNNNNNGG 1 cut(s) 344
BsmAI GTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 336, 405
BsnI GGCC 2 cut(s) 516, 566
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 2 cut(s) 401, 464
BspANI GGCC 2 cut(s) 516, 566
BspCNI CTCAG 1 cut(s) 283
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 333, 393, 549
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 2 cut(s) 185, 200
BspT104I TTCGAA 1 cut(s) 438
BspT107I GGYRCC 2 cut(s) 331, 547
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 566
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 2 cut(s) 70, 231
BssMI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 2 cut(s) 343, 433
Bst6I CTCTTC 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 438
BstDEI CTNAG 3 cut(s) 20, 291, 405
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 551
BstKTI GATC 6 cut(s) 12, 166, 193, 208, 306, 486
BstMAI GTCTC 1 cut(s) 166
BstMBI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 1 cut(s) 360
BstSCI CCNGG 2 cut(s) 85, 358
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 352, 355, 410
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 516, 566
BtgI CCRYGG 1 cut(s) 231
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 1 cut(s) 551
BtsIMutI CAGTG 2 cut(s) 77, 504
BveI ACCTGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 365
CciI TCATGA 1 cut(s) 351
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 2 cut(s) 392, 514
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 352
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 3 cut(s) 20, 291, 405
DpnI GATC 6 cut(s) 11, 165, 192, 207, 305, 485
DpnII GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 2 cut(s) 303, 347
EcoRII CCWGG 1 cut(s) 358
FaeI CATG 1 cut(s) 355
FaiI YATR 2 cut(s) 311, 353
FalI AAGNNNNNCTT 1 cut(s) 618
FaqI GGGAC 2 cut(s) 336, 405
FatI CATG 1 cut(s) 351
FbaI TGATCA 2 cut(s) 163, 483
Fnu4HI GCNGC 5 cut(s) 366, 369, 399, 402, 465
FokI GGATG 1 cut(s) 538
Fsp4HI GCNGC 5 cut(s) 366, 369, 399, 402, 465
GluI GCNGC 5 cut(s) 366, 369, 399, 402, 465
GsaI CCCAGC 2 cut(s) 182, 299
HaeIII GGCC 2 cut(s) 516, 566
HapII CCGG 3 cut(s) 86, 194, 567
Hin1II CATG 1 cut(s) 355
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HinfI GANTC 5 cut(s) 25, 82, 174, 348, 452
HpaII CCGG 3 cut(s) 86, 194, 567
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 74, 283
Hpy188III TCNNGA 2 cut(s) 352, 635
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 322, 382, 538, 578
HpyCH4III ACNGT 2 cut(s) 343, 433
HpyCH4V TGCA 3 cut(s) 48, 128, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 3 cut(s) 20, 291, 405
Hsp92II CATG 1 cut(s) 355
KpnI GGTACC 1 cut(s) 335
Ksp22I TGATCA 2 cut(s) 163, 483
Kzo9I GATC 6 cut(s) 9, 163, 190, 205, 303, 483
LmnI GCTCC 5 cut(s) 74, 235, 362, 498, 620
Lsp1109I GCAGC 3 cut(s) 352, 355, 410
LweI GCATC 1 cut(s) 226
MalI GATC 6 cut(s) 11, 165, 192, 207, 305, 485
MboI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
MboII GAAGA 4 cut(s) 63, 149, 161, 325
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 1 cut(s) 440
MlyI GAGTC 3 cut(s) 168, 357, 461
MseI TTAA 3 cut(s) 95, 443, 560
MspA1I CMGCKG 2 cut(s) 182, 401
MspI CCGG 3 cut(s) 86, 194, 567
MspR9I CCNGG 2 cut(s) 87, 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 620
NciI CCSGG 1 cut(s) 87
NdeII GATC 6 cut(s) 9, 163, 190, 205, 303, 483
NlaIII CATG 1 cut(s) 355
NlaIV GGNNCC 3 cut(s) 333, 393, 549
NspV TTCGAA 1 cut(s) 438
PagI TCATGA 1 cut(s) 351
PfeI GAWTC 2 cut(s) 25, 82
PkrI GCNGC 5 cut(s) 367, 370, 400, 403, 466
PleI GAGTC 3 cut(s) 168, 356, 460
PpsI GAGTC 3 cut(s) 168, 356, 460
Psp6I CCWGG 1 cut(s) 358
PspFI CCCAGC 2 cut(s) 178, 295
PspGI CCWGG 1 cut(s) 358
PspN4I GGNNCC 3 cut(s) 333, 393, 549
PspPI GGNCC 2 cut(s) 392, 514
PstNI CAGNNNCTG 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SaqAI TTAA 3 cut(s) 95, 443, 560
SatI GCNGC 5 cut(s) 366, 369, 399, 402, 465
Sau3AI GATC 6 cut(s) 9, 163, 190, 205, 303, 483
Sau96I GGNCC 2 cut(s) 392, 514
SchI GAGTC 3 cut(s) 168, 357, 461
ScrFI CCNGG 2 cut(s) 87, 360
SduI GDGCHC 1 cut(s) 79
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 438
SinI GGWCC 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 518, 635
SmoI CTYRAG 2 cut(s) 518, 635
Sse9I AATT 1 cut(s) 440
SsiI CCGC 2 cut(s) 401, 464
StyD4I CCNGG 2 cut(s) 85, 358
TaaI ACNGT 2 cut(s) 343, 433
TaqI TCGA 2 cut(s) 302, 438
TasI AATT 1 cut(s) 440
TauI GCSGC 2 cut(s) 404, 467
TfiI GAWTC 2 cut(s) 25, 82
Tru1I TTAA 3 cut(s) 95, 443, 560
Tru9I TTAA 3 cut(s) 95, 443, 560
TscAI CASTG 2 cut(s) 84, 511
TseI GCWGC 3 cut(s) 365, 368, 398
TspDTI ATGAA 4 cut(s) 273, 326, 368, 401
TspGWI ACGGA 2 cut(s) 248, 544
TspRI CASTG 2 cut(s) 84, 511
VpaK11BI GGWCC 1 cut(s) 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.