pycom05g22590

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011035
Physical Location & Seq
Forward (+)
24864030 .. 24864692
663 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g22590.1

Sequence Viewer

Length: 555 bp
ATGCATCTGACAGGTTTTGTGTGGATTCCGGATCCAGATAAGCGATTAACCGAGTCTTGTGCAAACCTTGAAAAGATGAGTTTGATCTTGAGATTACGGAATCATTTGCCTAATGGGATTTGCAGAAGACCCCTTATTTCTTCCATTGGAGCACTGAACCCTGGTAGCTTAAATGGGGTTTGTCGAAACTTTGGTCAACCTGCAAGGCAAGAAGAGGAAGAGGAGGAAGAGGTGGAGATTGACCAAAGGAGACTCCCTGCTGATTATGATCCAGCAACATTTGATCCCACGGAGCATCGTAGTCCTCCAACTGATCGGGTTTTTAGGCTCGTAGATGAAATATCATCACTCACACTGGTTGAAGTTGCTGAGCTGGGTTCCATTTTGATGAGAAAAAAGGGAATGACGGAACCACCAGTTGTAGGAGTCATGAAGCCGGGAGCTGCTGGAATAGGATTGGCGACTAAGGGACCGTCGGCAGCTAAGGAGGAGAAGAAACCAGAAAAGACTGTATTCGAATTGAAATTGGAGTCATTTGAGGCTCAAAGGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

185

Amino Acids

20.44

Weight (kDa)

5.54

Isoelectric Point (pI)

65.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 28
AclWI GGATC 4 cut(s) 26, 39, 263, 278
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 3 cut(s) 71, 362, 523
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 4 cut(s) 168, 373, 443, 482
AluI AGCT 4 cut(s) 168, 373, 443, 482
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 4 cut(s) 26, 39, 263, 278
Aor13HI TCCGGA 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 443, 479
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AspS9I GGNCC 1 cut(s) 470
AsuC2I CCSGG 1 cut(s) 438
AsuII TTCGAA 1 cut(s) 516
AvaII GGWCC 1 cut(s) 470
BamHI GGATCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 154
BbvI GCAGC 2 cut(s) 430, 491
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 162
BcnI CCSGG 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 244
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 2 cut(s) 444, 480
BlpI GCTNAGC 1 cut(s) 369
BlsI GCNGC 2 cut(s) 445, 481
Bme1390I CCNGG 2 cut(s) 162, 438
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 4 cut(s) 33, 379, 411, 471
BmrFI CCNGG 2 cut(s) 162, 438
BmsI GCATC 2 cut(s) 13, 304
BpiI GAAGAC 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 483
Bpu1102I GCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 438
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 160, 288
BsaWI WCCGGW 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 2 cut(s) 360, 416
Bse8I GATNNNNATC 1 cut(s) 267
BseAI TCCGGA 1 cut(s) 28
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 160, 288
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 360
BseNI ACTGG 2 cut(s) 360, 416
BseRI GAGGAG 2 cut(s) 236, 503
BseXI GCAGC 2 cut(s) 430, 491
BseYI CCCAGC 1 cut(s) 373
BsiHKAI GWGCWC 1 cut(s) 154
BsiSI CCGG 2 cut(s) 29, 437
BslFI GGGAC 1 cut(s) 483
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 483
Bsp119I TTCGAA 1 cut(s) 516
Bsp1286I GDGCHC 1 cut(s) 154
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 5 cut(s) 31, 84, 268, 283, 313
Bsp1720I GCTNAGC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 361
BspEI TCCGGA 1 cut(s) 28
BspHI TCATGA 1 cut(s) 429
BspLI GGNNCC 4 cut(s) 33, 379, 411, 471
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 4 cut(s) 26, 39, 263, 278
BspT104I TTCGAA 1 cut(s) 516
BsrI ACTGG 2 cut(s) 360, 416
BssECI CCNNGG 2 cut(s) 160, 288
BssMI GATC 5 cut(s) 31, 84, 268, 283, 313
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 474, 511
Bst6I CTCTTC 3 cut(s) 207, 213, 222
BstBI TTCGAA 1 cut(s) 516
BstDEI CTNAG 3 cut(s) 369, 465, 483
BstDSI CCRYGG 1 cut(s) 288
BstKTI GATC 5 cut(s) 34, 87, 271, 286, 316
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 5 cut(s) 31, 84, 268, 283, 313
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 160, 436
BstV1I GCAGC 2 cut(s) 430, 491
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
BtgI CCRYGG 1 cut(s) 288
BtsIMutI CAGTG 2 cut(s) 152, 353
BveI ACCTGC 1 cut(s) 208
CciI TCATGA 1 cut(s) 429
Cfr13I GGNCC 1 cut(s) 470
CviAII CATG 1 cut(s) 430
CviJI RGCY 7 cut(s) 168, 328, 373, 436, 443, 482, 542
CviKI_1 RGCY 7 cut(s) 168, 328, 373, 436, 443, 482, 542
DdeI CTNAG 3 cut(s) 369, 465, 483
DpnI GATC 5 cut(s) 33, 86, 270, 285, 315
DpnII GATC 5 cut(s) 31, 84, 268, 283, 313
Eam1104I CTCTTC 3 cut(s) 207, 213, 222
EarI CTCTTC 3 cut(s) 207, 213, 222
Eco47I GGWCC 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 433
FaiI YATR 2 cut(s) 267, 431
FaqI GGGAC 1 cut(s) 483
FatI CATG 1 cut(s) 429
Fnu4HI GCNGC 2 cut(s) 444, 480
Fsp4HI GCNGC 2 cut(s) 444, 480
GluI GCNGC 2 cut(s) 444, 480
GsaI CCCAGC 1 cut(s) 377
HapII CCGG 2 cut(s) 29, 437
Hin1II CATG 1 cut(s) 433
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HinfI GANTC 6 cut(s) 25, 53, 100, 252, 426, 530
HpaII CCGG 2 cut(s) 29, 437
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 4 cut(s) 29, 35, 88, 430
Hpy8I GTNNAC 1 cut(s) 197
Hpy99I CGWCG 1 cut(s) 478
HpyCH4III ACNGT 2 cut(s) 474, 511
HpyCH4V TGCA 4 cut(s) 4, 62, 123, 203
HpyF3I CTNAG 3 cut(s) 369, 465, 483
Hsp92II CATG 1 cut(s) 433
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 5 cut(s) 31, 84, 268, 283, 313
LmnI GCTCC 3 cut(s) 149, 292, 440
Lsp1109I GCAGC 2 cut(s) 430, 491
LweI GCATC 2 cut(s) 13, 304
MalI GATC 5 cut(s) 33, 86, 270, 285, 315
MboI GATC 5 cut(s) 31, 84, 268, 283, 313
MboII GAAGA 6 cut(s) 132, 138, 224, 230, 239, 505
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 518, 524
MlyI GAGTC 4 cut(s) 62, 246, 435, 539
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 7 cut(s) 208, 214, 217, 223, 315, 481, 532
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 28
MseI TTAA 2 cut(s) 47, 170
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 2 cut(s) 29, 437
MspR9I CCNGG 2 cut(s) 162, 438
MvaI CCWGG 1 cut(s) 162
NciI CCSGG 1 cut(s) 438
NdeII GATC 5 cut(s) 31, 84, 268, 283, 313
NlaIII CATG 1 cut(s) 433
NlaIV GGNNCC 4 cut(s) 33, 379, 411, 471
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 516
PagI TCATGA 1 cut(s) 429
PfeI GAWTC 2 cut(s) 25, 100
PkrI GCNGC 2 cut(s) 445, 481
PleI GAGTC 4 cut(s) 61, 246, 434, 538
PpsI GAGTC 4 cut(s) 61, 246, 434, 538
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 4 cut(s) 33, 379, 411, 471
PspPI GGNCC 1 cut(s) 470
PsuI RGATCY 1 cut(s) 31
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 2 cut(s) 47, 170
SatI GCNGC 2 cut(s) 444, 480
Sau3AI GATC 5 cut(s) 31, 84, 268, 283, 313
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 4 cut(s) 62, 246, 435, 539
ScrFI CCNGG 2 cut(s) 162, 438
SduI GDGCHC 1 cut(s) 154
SetI ASST 8 cut(s) 16, 69, 170, 202, 234, 375, 445, 484
SfaNI GCATC 2 cut(s) 13, 304
SfuI TTCGAA 1 cut(s) 516
SinI GGWCC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
Sse9I AATT 2 cut(s) 518, 524
StyD4I CCNGG 2 cut(s) 160, 436
TaaI ACNGT 2 cut(s) 474, 511
TaqI TCGA 2 cut(s) 184, 516
TasI AATT 2 cut(s) 518, 524
TfiI GAWTC 2 cut(s) 25, 100
Tru1I TTAA 2 cut(s) 47, 170
Tru9I TTAA 2 cut(s) 47, 170
TscAI CASTG 2 cut(s) 159, 360
TseI GCWGC 2 cut(s) 443, 479
TspDTI ATGAA 2 cut(s) 351, 446
TspGWI ACGGA 3 cut(s) 112, 305, 422
TspRI CASTG 2 cut(s) 159, 360
VpaK11BI GGWCC 1 cut(s) 470
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.