RLG00000014901

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0011035
Physical Location & Seq
Forward (+)
59316187 .. 59316955
769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014901

Sequence Viewer

Length: 543 bp
ATGGAAAATTTTTGGGATAGCTCTCGCCAGCTCAGAAGTCAGAACTCGTACTCAGGTTTCTCTAAGGTTTACTGTGGATTCCAGGCCCAGATAATTGCTGAAGTGAGTGGAGGAGGCCAGGAAGAACTGGAGATTGATCAAAGGAGACTCTCCGCCGATTACAACCCAGCAACGTTTGATCCTACAGAACATCGGAGTCCTCCCACAGAGCGTATTTTTAGGCTCGTAAATGAAATATCATCACTCACACTGGCTGACGTTGCTGAGCTGGGTTCGATCATTATGAAGAAAAAGGGACTGACGGTACCACTAACTGTGGGAGTCATGAAGACAGCAGCTGCTGCAATAAGATTAGCAATGAGGGGACCAGCAGCAGCTGAGGAGGAGAAGAAATTAGAGTCCTTCGAGGCTGTTTCGAAAATAAAACTGATCAAGGAGGTAAGGAGCTTCACTGATTTAGGCCTTAAGGAAGCAAAGGGTTTAGTGGAGAGCAAACTCGTTGAGAAGCTGAAAGCTCTTAAAGCGAAAGTTGTTCCTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

181

Amino Acids

19.84

Weight (kDa)

8.59

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 132 - 164 2.8e-08 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AciI CCGC 1 cut(s) 153
AclI AACGTT 1 cut(s) 173
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 7
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 2 cut(s) 50, 306
AflII CTTAAG 1 cut(s) 464
AjnI CCWGG 2 cut(s) 81, 117
AluBI AGCT 8 cut(s) 21, 31, 268, 338, 377, 447, 508, 515
AluI AGCT 8 cut(s) 21, 31, 268, 338, 377, 447, 508, 515
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 3 cut(s) 338, 341, 377
AoxI GGCC 3 cut(s) 84, 115, 460
ApeKI GCWGC 5 cut(s) 335, 338, 341, 371, 374
ApoI RAATTY 1 cut(s) 7
Asp718I GGTACC 1 cut(s) 304
AspS9I GGNCC 2 cut(s) 85, 365
AsuII TTCGAA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 365
BanI GGYRCC 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 335
BbvCI CCTCAGC 1 cut(s) 378
BbvI GCAGC 5 cut(s) 325, 328, 347, 383, 386
BciT130I CCWGG 2 cut(s) 83, 119
BclI TGATCA 2 cut(s) 136, 429
BcoDI GTCTC 1 cut(s) 139
BfmI CTRYAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 464
BisI GCNGC 5 cut(s) 336, 339, 342, 372, 375
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 5 cut(s) 337, 340, 343, 373, 376
Bme1390I CCNGG 2 cut(s) 83, 119
Bme18I GGWCC 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 85, 365
BmiI GGNNCC 2 cut(s) 306, 366
BmrFI CCNGG 2 cut(s) 83, 119
BpiI GAAGAC 1 cut(s) 335
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 378
Bpu1102I GCTNAGC 1 cut(s) 264
Bpu14I TTCGAA 1 cut(s) 416
Bse1I ACTGG 2 cut(s) 132, 255
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 2 cut(s) 83, 119
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 5 cut(s) 46, 66, 255, 369, 528
BseNI ACTGG 2 cut(s) 132, 255
BseRI GAGGAG 3 cut(s) 126, 395, 398
BseXI GCAGC 5 cut(s) 325, 328, 347, 383, 386
BseYI CCCAGC 2 cut(s) 166, 268
BshFI GGCC 3 cut(s) 86, 117, 462
BshNI GGYRCC 1 cut(s) 304
BslFI GGGAC 2 cut(s) 309, 378
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 2 cut(s) 309, 378
BsnI GGCC 3 cut(s) 86, 117, 462
Bsp119I TTCGAA 1 cut(s) 416
Bsp143I GATC 4 cut(s) 136, 178, 276, 429
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 1 cut(s) 153
BspANI GGCC 3 cut(s) 86, 117, 462
BspCNI CTCAG 5 cut(s) 45, 65, 256, 370, 529
BspHI TCATGA 1 cut(s) 324
BspLI GGNNCC 2 cut(s) 306, 366
BspPI GGATC 1 cut(s) 173
BspT104I TTCGAA 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 304
BspTI CTTAAG 1 cut(s) 464
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 2 cut(s) 132, 255
BssMI GATC 4 cut(s) 136, 178, 276, 429
Bst2UI CCWGG 2 cut(s) 83, 119
Bst4CI ACNGT 3 cut(s) 74, 304, 316
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 341
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 6 cut(s) 32, 52, 63, 264, 378, 537
BstKTI GATC 4 cut(s) 139, 181, 279, 432
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 4 cut(s) 136, 178, 276, 429
BstMWI GCNNNNNNNGC 3 cut(s) 260, 341, 521
BstNI CCWGG 2 cut(s) 83, 119
BstSCI CCNGG 2 cut(s) 81, 117
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 5 cut(s) 325, 328, 347, 383, 386
BstV2I GAAGAC 1 cut(s) 335
BsuRI GGCC 3 cut(s) 86, 117, 462
BtsIMutI CAGTG 2 cut(s) 248, 450
Cac8I GCNNGC 1 cut(s) 29
CaiI CAGNNNCTG 3 cut(s) 338, 341, 377
CciI TCATGA 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 85, 365
Csp6I GTAC 2 cut(s) 49, 305
CviAII CATG 1 cut(s) 325
CviQI GTAC 2 cut(s) 49, 305
DdeI CTNAG 6 cut(s) 32, 52, 63, 264, 378, 537
DpnI GATC 4 cut(s) 138, 180, 278, 431
DpnII GATC 4 cut(s) 136, 178, 276, 429
EciI GGCGGA 1 cut(s) 142
Eco147I AGGCCT 1 cut(s) 462
Eco47I GGWCC 1 cut(s) 365
Eco57I CTGAAG 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 81, 117
FaeI CATG 1 cut(s) 328
FaiI YATR 2 cut(s) 284, 326
FaqI GGGAC 2 cut(s) 309, 378
FatI CATG 1 cut(s) 324
FbaI TGATCA 2 cut(s) 136, 429
Fnu4HI GCNGC 5 cut(s) 336, 339, 342, 372, 375
Fsp4HI GCNGC 5 cut(s) 336, 339, 342, 372, 375
GluI GCNGC 5 cut(s) 336, 339, 342, 372, 375
GsaI CCCAGC 2 cut(s) 170, 272
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 3 cut(s) 86, 117, 462
Hin1II CATG 1 cut(s) 328
HinfI GANTC 5 cut(s) 78, 147, 196, 321, 398
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 35, 42, 195
Hpy188III TCNNGA 2 cut(s) 325, 536
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 3 cut(s) 74, 304, 316
HpyCH4IV ACGT 2 cut(s) 173, 258
HpyCH4V TGCA 1 cut(s) 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 341, 521
HpyF3I CTNAG 6 cut(s) 32, 52, 63, 264, 378, 537
HpySE526I ACGT 2 cut(s) 173, 258
Hsp92II CATG 1 cut(s) 328
KpnI GGTACC 1 cut(s) 308
Ksp22I TGATCA 2 cut(s) 136, 429
Kzo9I GATC 4 cut(s) 136, 178, 276, 429
LmnI GCTCC 1 cut(s) 444
Lsp1109I GCAGC 5 cut(s) 325, 328, 347, 383, 386
MaeII ACGT 2 cut(s) 173, 258
MalI GATC 4 cut(s) 138, 180, 278, 431
MboI GATC 4 cut(s) 136, 178, 276, 429
MboII GAAGA 4 cut(s) 134, 298, 340, 400
MluCI AATT 3 cut(s) 7, 93, 392
MlyI GAGTC 4 cut(s) 141, 205, 330, 407
MnlI CCTC 8 cut(s) 104, 107, 210, 354, 373, 376, 400, 430
MseI TTAA 2 cut(s) 465, 519
MspA1I CMGCKG 2 cut(s) 338, 377
MspCI CTTAAG 1 cut(s) 464
MspR9I CCNGG 2 cut(s) 83, 119
MvaI CCWGG 2 cut(s) 83, 119
MwoI GCNNNNNNNGC 3 cut(s) 260, 341, 521
NdeII GATC 4 cut(s) 136, 178, 276, 429
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 2 cut(s) 306, 366
NspV TTCGAA 1 cut(s) 416
PagI TCATGA 1 cut(s) 324
PceI AGGCCT 1 cut(s) 462
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 5 cut(s) 337, 340, 343, 373, 376
PleI GAGTC 4 cut(s) 141, 204, 329, 406
PpsI GAGTC 4 cut(s) 141, 204, 329, 406
Psp1406I AACGTT 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 81, 117
PspFI CCCAGC 2 cut(s) 166, 268
PspGI CCWGG 2 cut(s) 81, 117
PspN4I GGNNCC 2 cut(s) 306, 366
PspPI GGNCC 2 cut(s) 85, 365
PstNI CAGNNNCTG 3 cut(s) 338, 341, 377
PvuII CAGCTG 2 cut(s) 338, 377
RsaI GTAC 2 cut(s) 50, 306
RsaNI GTAC 2 cut(s) 49, 305
SaqAI TTAA 2 cut(s) 465, 519
SatI GCNGC 5 cut(s) 336, 339, 342, 372, 375
Sau3AI GATC 4 cut(s) 136, 178, 276, 429
Sau96I GGNCC 2 cut(s) 85, 365
SchI GAGTC 4 cut(s) 141, 205, 330, 407
ScrFI CCNGG 2 cut(s) 83, 119
SfcI CTRYAG 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 3 cut(s) 7, 93, 392
SseBI AGGCCT 1 cut(s) 462
SsiI CCGC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 462
StyD4I CCNGG 2 cut(s) 81, 117
TaaI ACNGT 3 cut(s) 74, 304, 316
TaiI ACGT 2 cut(s) 176, 261
TaqI TCGA 3 cut(s) 275, 405, 416
TasI AATT 3 cut(s) 7, 93, 392
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 2 cut(s) 465, 519
Tru9I TTAA 2 cut(s) 465, 519
TscAI CASTG 2 cut(s) 255, 457
TseI GCWGC 5 cut(s) 335, 338, 341, 371, 374
TspDTI ATGAA 3 cut(s) 246, 299, 341
TspRI CASTG 2 cut(s) 255, 457
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 365
XapI RAATTY 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.