pycom10g19310

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011035
Physical Location & Seq
Forward (+)
22434829 .. 22435476
648 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g19310.1

Sequence Viewer

Length: 648 bp
ATGAGTTTGATCTTGAGATTACGGAATCATTTGCCTAATGGGCTTTGCAGAAGACCATTTATTTCATCCCTTGGAGGACTGAATACTGGTAGCTTAAATGGGTTTTGTCGGAACTTTGGTCAACCTGCAAGGCGAGAAGAGGAAGAGGAGGAAGAAGTGGAGATTGACCAAAGGAGACTCCCTGCTGATTATGATCCAGCAACATTTGATCCCACAGAGCATCGTAGTCCTCCAACTGATCGGGTTTTTAGGCTCGTAGATGAAATATCGTCACTCACACTGGTTGAAGTTGCTGAGCTGGGTTCCATTTTGATGAGAAAAAAGGGAATGACGGAACCACCAGTTGTGGGAGTTATGAAGCCGGGAGCTGCTGGATTAGGATTGGCAATGAAGGGGCCGTCATCGGCAGCTAAGGAGGAGAAGAAACCAGAAAAGACTGTATTTGAATTGAAATTGGAGTCATTTGAGGCAGCTTCTAAAATAAAACTGATCAAGGAGGTAAGGAGCTTCACCGACTTAGGACTCAAGGAAGCAAAGGATTTAGTGGAGAAGGCGCCATCGGTTCTAAATACAGGAGTGTCAAAGGAAGAAGGAGAGCAACTGGTAGAGAAGCTGAAAGCTCTTGGCGCAAAAGTTTCCCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

216

Amino Acids

23.63

Weight (kDa)

5.93

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 148 - 215 3.6e-22 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 553
AclWI GGATC 2 cut(s) 188, 203
AcyI GRCGYC 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 347
AgsI TTSAA 4 cut(s) 287, 446, 451, 644
AluBI AGCT 8 cut(s) 93, 298, 368, 410, 473, 507, 613, 620
AluI AGCT 8 cut(s) 93, 298, 368, 410, 473, 507, 613, 620
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 188, 203
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 3 cut(s) 368, 407, 470
AspLEI GCGC 2 cut(s) 556, 629
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 502
BanI GGYRCC 1 cut(s) 553
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 355, 419, 482
BccI CCATC 1 cut(s) 565
BceAI ACGGC 1 cut(s) 382
BclI TGATCA 1 cut(s) 489
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 1 cut(s) 169
BfoI RGCGCY 1 cut(s) 557
BfuAI ACCTGC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 40
BisI GCNGC 3 cut(s) 369, 408, 471
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 3 cut(s) 370, 409, 472
Bme1390I CCNGG 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 4 cut(s) 304, 336, 396, 555
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 34, 509
BpuMI CCSGG 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 4 cut(s) 91, 285, 341, 606
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 1 cut(s) 65
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 4 cut(s) 91, 285, 341, 606
BseRI GAGGAG 2 cut(s) 161, 431
BseXI GCAGC 3 cut(s) 355, 419, 482
BseYI CCCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 553
BsiSI CCGG 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 397
Bsp143I GATC 5 cut(s) 9, 193, 208, 238, 489
Bsp1720I GCTNAGC 1 cut(s) 294
BspANI GGCC 1 cut(s) 397
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 4 cut(s) 304, 336, 396, 555
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 2 cut(s) 188, 203
BspT107I GGYRCC 1 cut(s) 553
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 4 cut(s) 91, 285, 341, 606
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 5 cut(s) 9, 193, 208, 238, 489
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 2 cut(s) 132, 138
BstACI GRCGYC 1 cut(s) 554
BstDEI CTNAG 3 cut(s) 294, 411, 517
BstF5I GGATG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 557
BstHHI GCGC 2 cut(s) 556, 629
BstKTI GATC 5 cut(s) 12, 196, 211, 241, 492
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 5 cut(s) 9, 193, 208, 238, 489
BstMWI GCNNNNNNNGC 2 cut(s) 40, 626
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 3 cut(s) 355, 419, 482
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 278
BveI ACCTGC 1 cut(s) 133
CfoI GCGC 2 cut(s) 556, 629
Cfr13I GGNCC 1 cut(s) 395
DdeI CTNAG 3 cut(s) 294, 411, 517
DinI GGCGCC 1 cut(s) 555
DpnI GATC 5 cut(s) 11, 195, 210, 240, 491
DpnII GATC 5 cut(s) 9, 193, 208, 238, 489
Eam1104I CTCTTC 2 cut(s) 132, 138
EarI CTCTTC 2 cut(s) 132, 138
Eco130I CCWWGG 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 70
EgeI GGCGCC 1 cut(s) 555
EheI GGCGCC 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 70
FaiI YATR 2 cut(s) 192, 356
FalI AAGNNNNNCTT 1 cut(s) 624
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 3 cut(s) 369, 408, 471
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 369, 408, 471
GlaI GCGC 2 cut(s) 555, 628
GluI GCNGC 3 cut(s) 369, 408, 471
GsaI CCCAGC 1 cut(s) 302
HaeII RGCGCY 1 cut(s) 557
HaeIII GGCC 1 cut(s) 397
HapII CCGG 1 cut(s) 362
HhaI GCGC 2 cut(s) 556, 629
Hin1I GRCGYC 1 cut(s) 554
Hin6I GCGC 2 cut(s) 554, 627
HinP1I GCGC 2 cut(s) 554, 627
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HinfI GANTC 4 cut(s) 25, 177, 458, 522
HpaII CCGG 1 cut(s) 362
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 3 cut(s) 385, 544, 584
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4V TGCA 2 cut(s) 48, 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 626
HpyF3I CTNAG 3 cut(s) 294, 411, 517
Hsp92I GRCGYC 1 cut(s) 554
HspAI GCGC 2 cut(s) 554, 627
KasI GGCGCC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 5 cut(s) 9, 193, 208, 238, 489
LmnI GCTCC 2 cut(s) 365, 504
Lsp1109I GCAGC 3 cut(s) 355, 419, 482
LweI GCATC 1 cut(s) 229
MaeIII GTNAC 1 cut(s) 270
MalI GATC 5 cut(s) 11, 195, 210, 240, 491
MboI GATC 5 cut(s) 9, 193, 208, 238, 489
MboII GAAGA 6 cut(s) 63, 149, 155, 164, 433, 599
MluCI AATT 2 cut(s) 446, 452
Mly113I GGCGCC 1 cut(s) 554
MlyI GAGTC 3 cut(s) 171, 467, 516
MmeI TCCRAC 2 cut(s) 89, 257
MnlI CCTC 8 cut(s) 68, 133, 139, 142, 240, 409, 460, 490
MseI TTAA 1 cut(s) 95
MslI CAYNNNNRTG 1 cut(s) 311
MspI CCGG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 363
MwoI GCNNNNNNNGC 2 cut(s) 40, 626
NarI GGCGCC 1 cut(s) 554
NciI CCSGG 1 cut(s) 363
NdeII GATC 5 cut(s) 9, 193, 208, 238, 489
NlaIV GGNNCC 4 cut(s) 304, 336, 396, 555
NmuCI GTSAC 1 cut(s) 270
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 3 cut(s) 370, 409, 472
PleI GAGTC 3 cut(s) 171, 466, 516
PluTI GGCGCC 1 cut(s) 557
PpsI GAGTC 3 cut(s) 171, 466, 516
PspFI CCCAGC 1 cut(s) 298
PspN4I GGNNCC 4 cut(s) 304, 336, 396, 555
PspPI GGNCC 1 cut(s) 395
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 3 cut(s) 369, 408, 471
Sau3AI GATC 5 cut(s) 9, 193, 208, 238, 489
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 3 cut(s) 171, 467, 516
ScrFI CCNGG 1 cut(s) 363
SfaNI GCATC 1 cut(s) 229
SfoI GGCGCC 1 cut(s) 555
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 13, 524
SmoI CTYRAG 2 cut(s) 13, 524
Sse9I AATT 2 cut(s) 446, 452
SspDI GGCGCC 1 cut(s) 553
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 70
TaaI ACNGT 1 cut(s) 439
TasI AATT 2 cut(s) 446, 452
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 3 cut(s) 368, 407, 470
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 4 cut(s) 54, 276, 371, 404
TspGWI ACGGA 2 cut(s) 37, 347
TspRI CASTG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.