Prupe.4G115200_v2.0.a1

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011035
Physical Location & Seq
Reverse (-)
6198280 .. 6200525
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G115200.1

Sequence Viewer

Length: 645 bp
ATGAGCTTGGTCTTAAGATTAAGGCAGCATTTGCCTAATGGGTTTTGCAGAAGACCCCTTATTTCTCCCCTTGCAGCACTGAATCCTGGTAGCTTAAATGGGTTTTGTCAAAACTTTAGTCAACCTGCAAGGAAAGAAGAGGAAGAGGAGGAAGAAGTGGAGATTGACCAAAGGAGACTACCTGCTGATTACGATCCTGCAACATTTGATCCAACAGAGCATCGCAGTCCTCCAACTGATCGTGTTTTTAGGCTCGTAGATGAAATATCATCACTCACACTGGCCGAAGTTGCTGAGCTGGGTTCCATTATGATGAGAAAAAAGGGAATGAAGGAACCACCAATTGTAGGAGTCATGAAGCCAGGAGCTGCTGGATTAGGATTGGCAATGAAGGGACCAGCAGCAGCTAAGGAGGAGAAGAAACCAGAAAAGACTGTCTTTGAATTGAAATTGGAGTCATTTGAGGCAGCTTCTAAAATAAAACTGATCAAGGAGGTAAGGAGCTTCACTGACTTAGGCCTCAAGGAAGCAAAGGATTTAGTGGAGAAGGCACCATCTGTGCTAAAGAAAGGATTATCAAAGGAAGAAGGAGAGCAACTAATAGAGAAGCTCAAAGCTCTTGGGGCAAAAGTTGTTCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

215

Amino Acids

23.64

Weight (kDa)

6.79

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 133, 190
AccB1I GGYRCC 1 cut(s) 550
AclWI GGATC 2 cut(s) 188, 203
AcoI YGGCCR 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 347
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 3 cut(s) 443, 448, 641
AjnI CCWGG 2 cut(s) 85, 361
AluBI AGCT 9 cut(s) 6, 93, 298, 368, 407, 470, 504, 610, 617
AluI AGCT 9 cut(s) 6, 93, 298, 368, 407, 470, 504, 610, 617
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 2 cut(s) 188, 203
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 2 cut(s) 282, 517
ApeKI GCWGC 6 cut(s) 25, 74, 368, 401, 404, 467
ArsI GACNNNNNNTTYG 2 cut(s) 103, 135
AspS9I GGNCC 1 cut(s) 395
AvaII GGWCC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 550
BbsI GAAGAC 1 cut(s) 58
BbvI GCAGC 6 cut(s) 37, 86, 355, 413, 416, 479
BccI CCATC 1 cut(s) 562
BciT130I CCWGG 2 cut(s) 87, 363
BclI TGATCA 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 169
BfrI CTTAAG 1 cut(s) 13
BfuAI ACCTGC 2 cut(s) 133, 190
BisI GCNGC 6 cut(s) 26, 75, 369, 402, 405, 468
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 6 cut(s) 27, 76, 370, 403, 406, 469
Bme1390I CCNGG 2 cut(s) 87, 363
Bme18I GGWCC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 4 cut(s) 304, 336, 396, 552
BmrFI CCNGG 2 cut(s) 87, 363
BmsI GCATC 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 58
Bpu10I CCTNAGC 1 cut(s) 408
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 285
Bse3DI GCAATG 1 cut(s) 393
Bse8I GATNNNNATC 1 cut(s) 192
BseBI CCWGG 2 cut(s) 87, 363
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 2 cut(s) 161, 428
BseXI GCAGC 6 cut(s) 37, 86, 355, 413, 416, 479
BseYI CCCAGC 1 cut(s) 298
BshFI GGCC 2 cut(s) 284, 519
BshNI GGYRCC 1 cut(s) 550
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 2 cut(s) 284, 519
Bsp143I GATC 4 cut(s) 193, 208, 238, 486
Bsp1720I GCTNAGC 1 cut(s) 294
BspANI GGCC 2 cut(s) 284, 519
BspCNI CTCAG 1 cut(s) 286
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 4 cut(s) 304, 336, 396, 552
BspMI ACCTGC 2 cut(s) 133, 190
BspPI GGATC 2 cut(s) 188, 203
BspT107I GGYRCC 1 cut(s) 550
BspTI CTTAAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 393
BsrI ACTGG 1 cut(s) 285
BssMI GATC 4 cut(s) 193, 208, 238, 486
Bst2UI CCWGG 2 cut(s) 87, 363
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 2 cut(s) 132, 138
BstAFI CTTAAG 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 31
BstDEI CTNAG 3 cut(s) 294, 408, 514
BstKTI GATC 4 cut(s) 196, 211, 241, 489
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 4 cut(s) 193, 208, 238, 486
BstMWI GCNNNNNNNGC 3 cut(s) 31, 290, 623
BstNI CCWGG 2 cut(s) 87, 363
BstSCI CCNGG 2 cut(s) 85, 361
BstV1I GCAGC 6 cut(s) 37, 86, 355, 413, 416, 479
BstV2I GAAGAC 1 cut(s) 58
BsuRI GGCC 2 cut(s) 284, 519
BtgZI GCGATG 1 cut(s) 206
BtsIMutI CAGTG 3 cut(s) 77, 278, 507
BveI ACCTGC 2 cut(s) 133, 190
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 395
CviAII CATG 1 cut(s) 355
DdeI CTNAG 3 cut(s) 294, 408, 514
DpnI GATC 4 cut(s) 195, 210, 240, 488
DpnII GATC 4 cut(s) 193, 208, 238, 486
EaeI YGGCCR 1 cut(s) 282
Eam1104I CTCTTC 2 cut(s) 132, 138
EarI CTCTTC 2 cut(s) 132, 138
Eco147I AGGCCT 1 cut(s) 519
Eco47I GGWCC 1 cut(s) 395
EcoRII CCWGG 2 cut(s) 85, 361
FaeI CATG 1 cut(s) 358
FaiI YATR 2 cut(s) 311, 356
FalI AAGNNNNNCTT 3 cut(s) 422, 454, 621
FaqI GGGAC 1 cut(s) 408
FatI CATG 1 cut(s) 354
FbaI TGATCA 1 cut(s) 486
Fnu4HI GCNGC 6 cut(s) 26, 75, 369, 402, 405, 468
Fsp4HI GCNGC 6 cut(s) 26, 75, 369, 402, 405, 468
GluI GCNGC 6 cut(s) 26, 75, 369, 402, 405, 468
GsaI CCCAGC 1 cut(s) 302
HaeIII GGCC 2 cut(s) 284, 519
Hin1II CATG 1 cut(s) 358
HincII GTYRAC 1 cut(s) 122
HindII GTYRAC 1 cut(s) 122
HinfI GANTC 3 cut(s) 82, 351, 455
Hpy166II GTNNAC 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 355, 638
Hpy8I GTNNAC 1 cut(s) 122
HpyAV CCTTC 4 cut(s) 325, 385, 541, 581
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 4 cut(s) 48, 74, 128, 200
HpyF10VI GCNNNNNNNGC 3 cut(s) 31, 290, 623
HpyF3I CTNAG 3 cut(s) 294, 408, 514
Hsp92II CATG 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 486
Kzo9I GATC 4 cut(s) 193, 208, 238, 486
LmnI GCTCC 2 cut(s) 365, 501
Lsp1109I GCAGC 6 cut(s) 37, 86, 355, 413, 416, 479
LweI GCATC 1 cut(s) 229
MalI GATC 4 cut(s) 195, 210, 240, 488
MboI GATC 4 cut(s) 193, 208, 238, 486
MboII GAAGA 6 cut(s) 63, 149, 155, 164, 430, 596
MfeI CAATTG 1 cut(s) 342
MluCI AATT 3 cut(s) 342, 443, 449
MlyI GAGTC 2 cut(s) 360, 464
MmeI TCCRAC 2 cut(s) 236, 257
MnlI CCTC 8 cut(s) 133, 139, 142, 240, 406, 457, 487, 530
MseI TTAA 3 cut(s) 14, 20, 95
MslI CAYNNNNRTG 1 cut(s) 311
MspCI CTTAAG 1 cut(s) 13
MspR9I CCNGG 2 cut(s) 87, 363
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 2 cut(s) 87, 363
MwoI GCNNNNNNNGC 3 cut(s) 31, 290, 623
NdeII GATC 4 cut(s) 193, 208, 238, 486
NlaIII CATG 1 cut(s) 358
NlaIV GGNNCC 4 cut(s) 304, 336, 396, 552
PagI TCATGA 1 cut(s) 354
PceI AGGCCT 1 cut(s) 519
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 6 cut(s) 27, 76, 370, 403, 406, 469
PleI GAGTC 2 cut(s) 359, 463
PpsI GAGTC 2 cut(s) 359, 463
Psp6I CCWGG 2 cut(s) 85, 361
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 2 cut(s) 85, 361
PspN4I GGNNCC 4 cut(s) 304, 336, 396, 552
PspPI GGNCC 1 cut(s) 395
PstNI CAGNNNCTG 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 14, 20, 95
SatI GCNGC 6 cut(s) 26, 75, 369, 402, 405, 468
Sau3AI GATC 4 cut(s) 193, 208, 238, 486
Sau96I GGNCC 1 cut(s) 395
SchI GAGTC 2 cut(s) 360, 464
ScrFI CCNGG 2 cut(s) 87, 363
SfaNI GCATC 1 cut(s) 229
SinI GGWCC 1 cut(s) 395
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 13, 521
SmoI CTYRAG 2 cut(s) 13, 521
Sse9I AATT 3 cut(s) 342, 443, 449
SseBI AGGCCT 1 cut(s) 519
StuI AGGCCT 1 cut(s) 519
StyD4I CCNGG 2 cut(s) 85, 361
TaaI ACNGT 1 cut(s) 436
TasI AATT 3 cut(s) 342, 443, 449
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 14, 20, 95
Tru9I TTAA 3 cut(s) 14, 20, 95
TscAI CASTG 3 cut(s) 84, 285, 514
TseI GCWGC 6 cut(s) 25, 74, 368, 401, 404, 467
TspDTI ATGAA 4 cut(s) 276, 344, 371, 404
TspRI CASTG 3 cut(s) 84, 285, 514
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.