Rorug05G0061800

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011035
Physical Location & Seq
Forward (+)
5359361 .. 5360879
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0061800.1

Sequence Viewer

Length: 564 bp
ATGATGAATAGGCAGTACAGTACATCTAGAACTGACCGCAAAACCATAGAGAAAAACAGAAGGGAACAAATGAAAGCCCTATTCTCCAAGCTCAAGTCTCTTCTACCCCATCAAAGTTCGAGGGAAGTAGCATCGCTGCCGGATGAACTAGACAAAGCCGTGAATTACATCAAGAAGTTGCAGATCAACTTGGAGAAAATGAGAGAGAAGAAAGACAGCCTAATGAGAGTAGCTAAGATCATTAAAAATAAAAATGCAGGCTTTGTTGGTGGACTTACTGATGGAGGGTTAAAATCACCACAGATCGAGATTCGTGAATTGGGTTCAGCTCTACATGTTGTTCTGATAACTAGGTTGGATTGTCAATTCATGTTTAGAGAGTCGATTCGCGTGCTTAATGAGGAGGGAGCTGACATTGTTAATGCCAGTTTCTCAGTTGTTGAAGATGCCATTTTACACATAATACATTCTAAGATTGGCGAGTCTGCACCAACCACAGTAGCTGCAAGGGTATCTGAGAGACTAAGAAAGTTTGTGAATGGATCTAGTACTATTGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

187

Amino Acids

21.08

Weight (kDa)

9.86

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 10 - 61 1.1e-09 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 390
AciI CCGC 1 cut(s) 37
AclWI GGATC 1 cut(s) 550
AfaI GTAC 3 cut(s) 17, 22, 550
AflIII ACRYGT 1 cut(s) 334
AgsI TTSAA 1 cut(s) 443
AluBI AGCT 5 cut(s) 91, 233, 329, 410, 503
AluI AGCT 5 cut(s) 91, 233, 329, 410, 503
Alw26I GTCTC 2 cut(s) 102, 514
AlwI GGATC 1 cut(s) 550
AlwNI CAGNNNCTG 1 cut(s) 503
ApeKI GCWGC 2 cut(s) 136, 503
AsuHPI GGTGA 1 cut(s) 288
BbvI GCAGC 2 cut(s) 123, 490
BccI CCATC 2 cut(s) 117, 275
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BcoDI GTCTC 2 cut(s) 102, 514
BfaI CTAG 4 cut(s) 27, 149, 351, 546
BisI GCNGC 2 cut(s) 137, 504
BlsI GCNGC 2 cut(s) 138, 505
BmcAI AGTACT 1 cut(s) 550
BmsI GCATC 2 cut(s) 140, 436
BpuEI CTTGAG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 426
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 447, 507
BseNI ACTGG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 123, 490
BsgI GTGCAG 1 cut(s) 471
Bsh1236I CGCG 1 cut(s) 390
BsiSI CCGG 1 cut(s) 140
BsmAI GTCTC 2 cut(s) 102, 514
Bsp143I GATC 4 cut(s) 183, 237, 303, 542
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 2 cut(s) 446, 508
BspFNI CGCG 1 cut(s) 390
BspPI GGATC 1 cut(s) 550
BsrI ACTGG 1 cut(s) 426
BssMI GATC 4 cut(s) 183, 237, 303, 542
Bst4CI ACNGT 2 cut(s) 20, 499
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 259, 392
BstDEI CTNAG 5 cut(s) 234, 433, 471, 516, 524
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 390
BstKTI GATC 4 cut(s) 186, 240, 306, 545
BstMAI GTCTC 2 cut(s) 102, 514
BstMBI GATC 4 cut(s) 183, 237, 303, 542
BstNSI RCATGY 1 cut(s) 338
BstUI CGCG 1 cut(s) 390
BstV1I GCAGC 2 cut(s) 123, 490
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 148
Cac8I GCNNGC 2 cut(s) 259, 392
CaiI CAGNNNCTG 1 cut(s) 503
Csp6I GTAC 3 cut(s) 16, 21, 549
CviAII CATG 2 cut(s) 335, 370
CviJI RGCY 9 cut(s) 77, 91, 158, 219, 233, 261, 329, 410, 503
CviKI_1 RGCY 9 cut(s) 77, 91, 158, 219, 233, 261, 329, 410, 503
CviQI GTAC 3 cut(s) 16, 21, 549
DdeI CTNAG 5 cut(s) 234, 433, 471, 516, 524
DpnI GATC 4 cut(s) 185, 239, 305, 544
DpnII GATC 4 cut(s) 183, 237, 303, 542
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
FaeI CATG 2 cut(s) 338, 373
FaiI YATR 4 cut(s) 47, 336, 371, 461
FatI CATG 2 cut(s) 334, 369
Fnu4HI GCNGC 2 cut(s) 137, 504
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 2 cut(s) 137, 504
FspBI CTAG 4 cut(s) 27, 149, 351, 546
GluI GCNGC 2 cut(s) 137, 504
HapII CCGG 1 cut(s) 140
Hin1II CATG 2 cut(s) 338, 373
HinfI GANTC 4 cut(s) 310, 380, 385, 482
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 2 cut(s) 345, 517
Hpy188III TCNNGA 4 cut(s) 27, 172, 307, 314
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 54
HpyCH4III ACNGT 2 cut(s) 20, 499
HpyCH4V TGCA 5 cut(s) 181, 257, 488, 506, 557
HpyF3I CTNAG 5 cut(s) 234, 433, 471, 516, 524
Hsp92II CATG 2 cut(s) 338, 373
Kzo9I GATC 4 cut(s) 183, 237, 303, 542
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 3 cut(s) 153, 243, 439
Lsp1109I GCAGC 2 cut(s) 123, 490
LweI GCATC 2 cut(s) 140, 436
MaeI CTAG 4 cut(s) 27, 149, 351, 546
MalI GATC 4 cut(s) 185, 239, 305, 544
MboI GATC 4 cut(s) 183, 237, 303, 542
MboII GAAGA 3 cut(s) 92, 220, 455
MflI RGATCY 1 cut(s) 542
MluCI AATT 3 cut(s) 163, 317, 365
MlyI GAGTC 2 cut(s) 389, 491
MmeI TCCRAC 1 cut(s) 336
MnlI CCTC 4 cut(s) 114, 278, 394, 397
MseI TTAA 4 cut(s) 243, 290, 396, 420
MspI CCGG 1 cut(s) 140
MvnI CGCG 1 cut(s) 390
NdeII GATC 4 cut(s) 183, 237, 303, 542
NlaIII CATG 2 cut(s) 338, 373
NspI RCATGY 1 cut(s) 338
PciI ACATGT 1 cut(s) 334
PfeI GAWTC 2 cut(s) 310, 385
PkrI GCNGC 2 cut(s) 138, 505
PleI GAGTC 2 cut(s) 388, 490
PpsI GAGTC 2 cut(s) 388, 490
PscI ACATGT 1 cut(s) 334
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 1 cut(s) 542
RsaI GTAC 3 cut(s) 17, 22, 550
RsaNI GTAC 3 cut(s) 16, 21, 549
SaqAI TTAA 4 cut(s) 243, 290, 396, 420
SatI GCNGC 2 cut(s) 137, 504
Sau3AI GATC 4 cut(s) 183, 237, 303, 542
ScaI AGTACT 1 cut(s) 550
SchI GAGTC 2 cut(s) 389, 491
SetI ASST 6 cut(s) 93, 235, 331, 356, 412, 505
SfaNI GCATC 2 cut(s) 140, 436
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 163, 317, 365
SsiI CCGC 1 cut(s) 37
SspMI CTAG 4 cut(s) 27, 149, 351, 546
TaaI ACNGT 2 cut(s) 20, 499
TaqI TCGA 3 cut(s) 119, 306, 383
TasI AATT 3 cut(s) 163, 317, 365
TatI WGTACW 3 cut(s) 15, 20, 548
TfiI GAWTC 2 cut(s) 310, 385
Tru1I TTAA 4 cut(s) 243, 290, 396, 420
Tru9I TTAA 4 cut(s) 243, 290, 396, 420
TseI GCWGC 2 cut(s) 136, 503
TspDTI ATGAA 4 cut(s) 20, 86, 159, 358
XbaI TCTAGA 1 cut(s) 26
XceI RCATGY 1 cut(s) 338
XspI CTAG 4 cut(s) 27, 149, 351, 546
ZrmI AGTACT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.