MD05G1249000.v1.1

RIBOSOMAL protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011035
Physical Location & Seq
Forward (+)
38068231 .. 38069675
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1249000.v1.1.491

Sequence Viewer

Length: 432 bp
ATGAAGCATCGTGGTCCTCCAACTGATCGGGTTTTTAGGCTCGTAGATGAAATATCATCACTCACACTGGTGGAAGTTGCTGAGCTGGGTTCCATTTTGATGAGAAAAAATGGAATGACGGAACCACCAGTTGTAGGAGTCATGAAGCCGGGAGCTGCTGGAATAGGATTGGCGACGAAGGGACCGACGGCAGCTAAGGAGGAGAAGAAAACAGAAAAGATTCTACTCGAATTGAAATTGGAGTCATTTGAGGCTGCTTCAAAAATAAAACTGATCAAGGAGGTAAGGAGCTTCACTGACTTGGGACTCAAGGAAGCAAAGGATGTAGTGGAGAAGGCGCCGTCGGTGCTAAAGACAGGAGTGTCAAAGGAAGAAGGAGAGCAACTAATAGAGAAGCTGAAAGCTCTTGGCGCAAAAGTTTCTCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12 Ribosomal_L12_N

Protein Analysis

144

Amino Acids

15.42

Weight (kDa)

9.05

Isoelectric Point (pI)

23.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 78 - 143 1.2e-21 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011035)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G70190 AT1G70190
fragaria_vesca FvH4_3g12640
malus_domestica MD05G1249000.v1.1 MD10G1229600.v1.1
prunus_persica Prupe.4G115200_v2.0.a1
pyrus_communis pycom05g22590 pycom10g19310
rosa_chinensis RchiOBHm_Chr5g0020611
rosa_laevigata RLG00000014901 RLG00000032543
rosa_multiflora Rmu_sc0005607.1_g000013
rosa_roxburghii Rroxscaffold_1G00057680
rosa_rugosa Rorug05G0061700 Rorug05G0061800
rosa_samantha Rh5AG151600 Rh5BG151200 Rh5CG162600 Rh5DG150500
rosa_wichuraiana Rw5G013430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 361
AccB1I GGYRCC 1 cut(s) 337
AcyI GRCGYC 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 3 cut(s) 235, 261, 428
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 6 cut(s) 85, 155, 194, 291, 397, 404
AluI AGCT 6 cut(s) 85, 155, 194, 291, 397, 404
ApeKI GCWGC 3 cut(s) 155, 191, 254
Asp700I GAANNNNTTC 1 cut(s) 219
AspLEI GCGC 2 cut(s) 340, 413
AspS9I GGNCC 2 cut(s) 14, 182
AsuC2I CCSGG 1 cut(s) 150
AvaII GGWCC 2 cut(s) 14, 182
BanI GGYRCC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 142, 203, 241
BceAI ACGGC 2 cut(s) 204, 325
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 341
BisI GCNGC 3 cut(s) 156, 192, 255
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 3 cut(s) 157, 193, 256
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 2 cut(s) 14, 182
BmgT120I GGNCC 2 cut(s) 14, 182
BmiI GGNNCC 4 cut(s) 91, 123, 183, 339
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 16
Bpu10I CCTNAGC 1 cut(s) 195
Bpu1102I GCTNAGC 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 72, 128
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 2 cut(s) 72, 128
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 3 cut(s) 142, 203, 241
BseYI CCCAGC 1 cut(s) 85
BshNI GGYRCC 1 cut(s) 337
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 2 cut(s) 195, 318
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 2 cut(s) 195, 318
Bsp143I GATC 2 cut(s) 25, 273
Bsp1720I GCTNAGC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 141
BspLI GGNNCC 4 cut(s) 91, 123, 183, 339
BspT107I GGYRCC 1 cut(s) 337
BsrI ACTGG 2 cut(s) 72, 128
BssMI GATC 2 cut(s) 25, 273
BssNI GRCGYC 1 cut(s) 338
BstACI GRCGYC 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 81, 195
BstF5I GGATG 1 cut(s) 328
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 2 cut(s) 340, 413
BstKTI GATC 2 cut(s) 28, 276
BstMBI GATC 2 cut(s) 25, 273
BstMWI GCNNNNNNNGC 2 cut(s) 346, 410
BstSCI CCNGG 1 cut(s) 148
BstV1I GCAGC 3 cut(s) 142, 203, 241
BtsCI GGATG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 65, 294
CciI TCATGA 1 cut(s) 141
CfoI GCGC 2 cut(s) 340, 413
Cfr13I GGNCC 2 cut(s) 14, 182
CviAII CATG 1 cut(s) 142
CviJI RGCY 9 cut(s) 40, 85, 148, 155, 194, 254, 291, 397, 404
CviKI_1 RGCY 9 cut(s) 40, 85, 148, 155, 194, 254, 291, 397, 404
DdeI CTNAG 2 cut(s) 81, 195
DinI GGCGCC 1 cut(s) 339
DpnI GATC 2 cut(s) 27, 275
DpnII GATC 2 cut(s) 25, 273
DrdI GACNNNNNNGTC 1 cut(s) 361
DseDI GACNNNNNNGTC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 14, 182
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
FaeI CATG 1 cut(s) 145
FaiI YATR 1 cut(s) 143
FalI AAGNNNNNCTT 1 cut(s) 408
FaqI GGGAC 2 cut(s) 195, 318
FatI CATG 1 cut(s) 141
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 156, 192, 255
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 3 cut(s) 156, 192, 255
GlaI GCGC 2 cut(s) 339, 412
GluI GCNGC 3 cut(s) 156, 192, 255
GsaI CCCAGC 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 341
HapII CCGG 1 cut(s) 149
HhaI GCGC 2 cut(s) 340, 413
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 1 cut(s) 145
Hin6I GCGC 2 cut(s) 338, 411
HinP1I GCGC 2 cut(s) 338, 411
HinfI GANTC 4 cut(s) 138, 220, 242, 306
HpaII CCGG 1 cut(s) 149
Hpy188III TCNNGA 2 cut(s) 142, 425
Hpy99I CGWCG 3 cut(s) 178, 190, 346
HpyAV CCTTC 3 cut(s) 172, 328, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 410
HpyF3I CTNAG 2 cut(s) 81, 195
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 1 cut(s) 145
HspAI GCGC 2 cut(s) 338, 411
KasI GGCGCC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 25, 273
LmnI GCTCC 2 cut(s) 152, 288
LpnPI CCDG 6 cut(s) 53, 71, 141, 144, 162, 342
Lsp1109I GCAGC 3 cut(s) 142, 203, 241
LweI GCATC 1 cut(s) 16
MalI GATC 2 cut(s) 27, 275
MboI GATC 2 cut(s) 25, 273
MboII GAAGA 2 cut(s) 217, 383
MluCI AATT 2 cut(s) 230, 236
Mly113I GGCGCC 1 cut(s) 338
MlyI GAGTC 3 cut(s) 147, 251, 300
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 4 cut(s) 27, 193, 244, 274
MroXI GAANNNNTTC 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 68, 98
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 150
MwoI GCNNNNNNNGC 2 cut(s) 346, 410
NarI GGCGCC 1 cut(s) 338
NciI CCSGG 1 cut(s) 150
NdeII GATC 2 cut(s) 25, 273
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 4 cut(s) 91, 123, 183, 339
OliI CACNNNNGTG 1 cut(s) 68
PagI TCATGA 1 cut(s) 141
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 220
PkrI GCNGC 3 cut(s) 157, 193, 256
PleI GAGTC 3 cut(s) 146, 250, 300
PluTI GGCGCC 1 cut(s) 341
PpsI GAGTC 3 cut(s) 146, 250, 300
PspFI CCCAGC 1 cut(s) 85
PspN4I GGNNCC 4 cut(s) 91, 123, 183, 339
PspPI GGNCC 2 cut(s) 14, 182
RseI CAYNNNNRTG 2 cut(s) 68, 98
SatI GCNGC 3 cut(s) 156, 192, 255
Sau3AI GATC 2 cut(s) 25, 273
Sau96I GGNCC 2 cut(s) 14, 182
SchI GAGTC 3 cut(s) 147, 251, 300
ScrFI CCNGG 1 cut(s) 150
SetI ASST 7 cut(s) 87, 157, 196, 285, 293, 399, 406
SfaNI GCATC 1 cut(s) 16
SfoI GGCGCC 1 cut(s) 339
SinI GGWCC 2 cut(s) 14, 182
SmiMI CAYNNNNRTG 2 cut(s) 68, 98
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 2 cut(s) 230, 236
SspDI GGCGCC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 148
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 1 cut(s) 199
TasI AATT 2 cut(s) 230, 236
TfiI GAWTC 1 cut(s) 220
TscAI CASTG 2 cut(s) 72, 301
TseI GCWGC 3 cut(s) 155, 191, 254
TspDTI ATGAA 3 cut(s) 17, 63, 158
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 2 cut(s) 72, 301
VpaK11BI GGWCC 2 cut(s) 14, 182
XmnI GAANNNNTTC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.