Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012927

Physical Location & Seq

Genomic Coordinates Reverse (-)

8271190 .. 8272830

Gene Structure 1641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAACAGAGGGGGAGGAGGAGCCGGAGCAGGAGCCGGAGGTGGGTCCGGCGCCGCGAGCGGACCCACATCGGCGGCGGCGTTGGCTGCAGCTAAGAAGCAGAAGAAGTGGCTGGAGAGTATGGAGACTGACATCGGCACTATCGTCGACTATTTCAGTTACCTCGTCAACGTCTCCAGGGTGAGTGAGCCACCTGTTAGGAACTCTCAAGAAGCTATGATGATGGAGATGCGTGCTGCTAGAATGGTTCAGGCATCTGATTCTCTACTTAAGTTGGTGTCGGACCTGAAGCAGACTGCACTCTTTTCTGGATTTGCATCCCTTAATGACCATGTAGAGGAAAGAAAGGCAGAGTTTGACAAGCAGGCCGAGAAGACTGACCGCATGTTATCTAGAATTGGGGAGGAGGCAGCTGCCAGCCTGAAGGAGCTTGAAGCCCATTATTATTCTTCATCTGTACCACATACACATGAGAACGACTTGCAGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med22

Protein Analysis

164

Amino Acids

17.47

Weight (kDa)

5.59

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med22	PF06179	41 - 138	1.4e-26	Surfeit locus protein 5 subunit 22 of Mediator complex

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07950 AT1G07950 AT1G16430
fragaria_vesca	FvH4_3g13800
malus_domestica	MD02G1009700.v1.1
prunus_persica	Prupe.7G260300_v2.0.a1 Prupe.7G260300_v2.0.a1
pyrus_communis	pycom15g13880
rosa_chinensis	RchiOBHm_Chr5g0022991
rosa_laevigata	RLG00000032687
rosa_multiflora	Rmu_sc0002675.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056350
rosa_rugosa	Rorug05G0076300
rosa_samantha	Rh5AG162500 Rh5BG161700 Rh5CG176400 Rh5DG163100
rosa_wichuraiana	Rw5G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccBSI	CCGCTC	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	56
AciI	CCGC	5 cut(s)	54, 60, 74, 77, 382
AcuI	CTGAAG	2 cut(s)	308, 443
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	459
AfiI	CCNNNNNNNGG	2 cut(s)	42, 337
AflII	CTTAAG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	4 cut(s)	92, 215, 413, 430
AluI	AGCT	4 cut(s)	92, 215, 413, 430
Alw26I	GTCTC	2 cut(s)	119, 178
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	6 cut(s)	86, 89, 236, 410, 413, 484
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	45, 62, 283
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	3 cut(s)	45, 62, 283
BanI	GGYRCC	1 cut(s)	50
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	5 cut(s)	73, 101, 223, 400, 422
BccI	CCATC	1 cut(s)	217
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	119, 178
BfaI	CTAG	2 cut(s)	240, 393
BfmI	CTRYAG	1 cut(s)	87
BfoI	RGCGCY	1 cut(s)	54
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	9 cut(s)	54, 75, 78, 87, 90, 237, 411, 414, 485
BlsI	GCNGC	9 cut(s)	55, 76, 79, 88, 91, 238, 412, 415, 486
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	3 cut(s)	45, 62, 283
BmgT120I	GGNCC	3 cut(s)	45, 62, 283
BmiI	GGNNCC	5 cut(s)	22, 34, 46, 52, 64
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	3 cut(s)	219, 263, 326
BpiI	GAAGAC	1 cut(s)	380
BpmI	CTGGAG	2 cut(s)	134, 160
BpuEI	CTTGAG	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 337
Bse8I	GATNNNNATC	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	317
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	2 cut(s)	42, 337
BseRI	GAGGAG	3 cut(s)	30, 33, 419
BseXI	GCAGC	5 cut(s)	73, 101, 223, 400, 422
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	24, 36, 48
BslI	CCNNNNNNNGG	2 cut(s)	42, 337
BsmAI	GTCTC	2 cut(s)	119, 178
BsmBI	CGTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	368
BspACI	CCGC	5 cut(s)	54, 60, 74, 77, 382
BspANI	GGCC	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	5 cut(s)	22, 34, 46, 52, 64
BspMAI	CTGCAG	1 cut(s)	91
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	1 cut(s)	269
BsrBI	CCGCTC	1 cut(s)	60
BssECI	CCNNGG	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	4 cut(s)	58, 234, 366, 418
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstMAI	GTCTC	2 cut(s)	119, 178
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 83, 86
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	388
BstSCI	CCNGG	1 cut(s)	176
BstSFI	CTRYAG	1 cut(s)	87
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	5 cut(s)	73, 101, 223, 400, 422
BstV2I	GAAGAC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	317
Cac8I	GCNNGC	4 cut(s)	58, 234, 366, 418
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	45, 62, 283
Csp6I	GTAC	1 cut(s)	458
CviAII	CATG	3 cut(s)	332, 385, 470
CviQI	GTAC	1 cut(s)	458
DdeI	CTNAG	1 cut(s)	93
DinI	GGCGCC	1 cut(s)	52
Eco47I	GGWCC	3 cut(s)	45, 62, 283
Eco57I	CTGAAG	2 cut(s)	308, 443
EcoRII	CCWGG	1 cut(s)	176
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	3 cut(s)	335, 388, 473
FaiI	YATR	6 cut(s)	122, 218, 333, 386, 465, 471
FatI	CATG	3 cut(s)	331, 384, 469
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	9 cut(s)	54, 75, 78, 87, 90, 237, 411, 414, 485
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	9 cut(s)	54, 75, 78, 87, 90, 237, 411, 414, 485
FspBI	CTAG	2 cut(s)	240, 393
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	9 cut(s)	54, 75, 78, 87, 90, 237, 411, 414, 485
GsuI	CTGGAG	2 cut(s)	134, 160
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	3 cut(s)	24, 36, 48
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	3 cut(s)	335, 388, 473
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	2 cut(s)	148, 169
HindII	GTYRAC	2 cut(s)	148, 169
HinfI	GANTC	1 cut(s)	260
HpaII	CCGG	3 cut(s)	24, 36, 48
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	148, 169
Hpy188I	TCNGA	2 cut(s)	259, 283
Hpy188III	TCNNGA	3 cut(s)	209, 309, 393
Hpy8I	GTNNAC	2 cut(s)	148, 169
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	418
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	4 cut(s)	89, 299, 317, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 83, 86
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	335, 388, 473
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
LmnI	GCTCC	4 cut(s)	20, 26, 32, 427
Lsp1109I	GCAGC	5 cut(s)	73, 101, 223, 400, 422
LweI	GCATC	3 cut(s)	219, 263, 326
MaeI	CTAG	2 cut(s)	240, 393
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	158
MbiI	CCGCTC	1 cut(s)	60
MboII	GAAGA	3 cut(s)	115, 385, 441
MluCI	AATT	1 cut(s)	396
Mly113I	GGCGCC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	7 cut(s)	8, 11, 32, 173, 331, 397, 400
MseI	TTAA	2 cut(s)	270, 324
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	3 cut(s)	24, 36, 48
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	3 cut(s)	57, 83, 86
NarI	GGCGCC	1 cut(s)	51
NlaIII	CATG	3 cut(s)	335, 388, 473
NlaIV	GGNNCC	5 cut(s)	22, 34, 46, 52, 64
NmeAIII	GCCGAG	1 cut(s)	394
NspI	RCATGY	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 141
PfeI	GAWTC	1 cut(s)	260
PkrI	GCNGC	9 cut(s)	55, 76, 79, 88, 91, 238, 412, 415, 486
PluTI	GGCGCC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	5 cut(s)	22, 34, 46, 52, 64
PspPI	GGNCC	3 cut(s)	45, 62, 283
PstI	CTGCAG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	1 cut(s)	459
RsaNI	GTAC	1 cut(s)	458
RseI	CAYNNNNRTG	1 cut(s)	468
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	270, 324
SatI	GCNGC	9 cut(s)	54, 75, 78, 87, 90, 237, 411, 414, 485
Sau96I	GGNCC	3 cut(s)	45, 62, 283
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	9 cut(s)	43, 94, 165, 174, 196, 217, 288, 415, 432
SfaNI	GCATC	3 cut(s)	219, 263, 326
SfcI	CTRYAG	1 cut(s)	87
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	3 cut(s)	45, 62, 283
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	207, 269
SmoI	CTYRAG	2 cut(s)	207, 269
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	5 cut(s)	54, 60, 74, 77, 382
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	2 cut(s)	240, 393
StyD4I	CCNGG	1 cut(s)	176
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	147
TasI	AATT	1 cut(s)	396
TauI	GCSGC	3 cut(s)	56, 77, 80
TfiI	GAWTC	1 cut(s)	260
Tru1I	TTAA	2 cut(s)	270, 324
Tru9I	TTAA	2 cut(s)	270, 324
TseI	GCWGC	6 cut(s)	86, 89, 236, 410, 413, 484
TspDTI	ATGAA	2 cut(s)	17, 441
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	3 cut(s)	45, 62, 283
XbaI	TCTAGA	1 cut(s)	392
XceI	RCATGY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	2 cut(s)	240, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.