Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012927

Physical Location & Seq

Genomic Coordinates Reverse (-)

9468688 .. 9469915

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13880.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAATAAGGGTGGAGGTGCAGCGTCAGGGGGAGGAGGATTGGGAGGCGCTGGGAGCGGGCCCACCGCGGCTGCTGCTGTGGCGGCAGCTCAGAAGCAGAAGGCGCTGCTTCAGAGAGTGGAGACCGACATCTCCCAAATCGTCGACAATTTCAGCCACCTCGTCCACGTCTCCAGGGTGAATGATCCGCCTGTTAGAAACTCTCAGGAAGCTTTCATGATGGAGATGCGTGCTGCTCGAATGGTCCAGGCAGCTGATTCTCTGCTTAAGTTGGTGTCGGAATTGAAACAGACGGCAATATTTTCAGGGTTTGCCTCCCTCAATGACCATGTAGAGAAAAGAATTGTGGAGTTCAACCAGCAAGCCGAGAACACAGACCGCTTGTTGGCTAGAATCGGAGAGGAGGCAGCTGCTAGCCTCAAGGAGCTCGAATCCCATTACTACTCTTCCGCGCTGAGGACTGCTCAAAACTTGCAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med22

Protein Analysis

161

Amino Acids

17.01

Weight (kDa)

6.42

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07950 AT1G07950 AT1G16430
fragaria_vesca	FvH4_3g13800
malus_domestica	MD02G1009700.v1.1
prunus_persica	Prupe.7G260300_v2.0.a1 Prupe.7G260300_v2.0.a1
pyrus_communis	pycom15g13880
rosa_chinensis	RchiOBHm_Chr5g0022991
rosa_laevigata	RLG00000032687
rosa_multiflora	Rmu_sc0002675.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056350
rosa_rugosa	Rorug05G0076300
rosa_samantha	Rh5AG162500 Rh5BG161700 Rh5CG176400 Rh5DG163100
rosa_wichuraiana	Rw5G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	2 cut(s)	68, 452
AciI	CCGC	7 cut(s)	57, 66, 68, 83, 188, 379, 450
AclWI	GGATC	1 cut(s)	179
AcuI	CTGAAG	1 cut(s)	95
AfiI	CCNNNNNNNGG	2 cut(s)	385, 456
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	286, 355
AjiI	CACGTC	1 cut(s)	169
AjnI	CCWGG	2 cut(s)	173, 246
AluBI	AGCT	5 cut(s)	89, 212, 254, 410, 427
AluI	AGCT	5 cut(s)	89, 212, 254, 410, 427
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	116, 175
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	59
ApaI	GGGCCC	1 cut(s)	63
AspLEI	GCGC	3 cut(s)	50, 106, 454
AspS9I	GGNCC	3 cut(s)	59, 60, 244
AsuHPI	GGTGA	1 cut(s)	190
AsuNHI	GCTAGC	1 cut(s)	413
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	63
BanII	GRGCYC	2 cut(s)	63, 429
Bbv12I	GWGCWC	1 cut(s)	429
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	9 cut(s)	32, 58, 61, 93, 98, 220, 263, 397, 419
BccI	CCATC	1 cut(s)	214
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	2 cut(s)	175, 248
BcoDI	GTCTC	2 cut(s)	116, 175
BfaI	CTAG	2 cut(s)	390, 414
BfoI	RGCGCY	2 cut(s)	51, 107
BfrI	CTTAAG	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	175, 248
Bme18I	GGWCC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	59, 60, 244
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	2 cut(s)	175, 248
BmsI	GCATC	1 cut(s)	216
BmtI	GCTAGC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
BpmI	CTGGAG	1 cut(s)	157
Bpu10I	CCTNAGC	1 cut(s)	455
BpuEI	CTTGAG	1 cut(s)	404
BsaI	GGTCTC	1 cut(s)	116
BsaJI	CCNNGG	2 cut(s)	66, 174
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 456
BseBI	CCWGG	2 cut(s)	175, 248
BseDI	CCNNGG	2 cut(s)	66, 174
BseLI	CCNNNNNNNGG	2 cut(s)	385, 456
BseMII	CTCAG	3 cut(s)	104, 218, 446
BseRI	GAGGAG	2 cut(s)	48, 416
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	9 cut(s)	32, 58, 61, 93, 98, 220, 263, 397, 419
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	39
Bsh1236I	CGCG	2 cut(s)	68, 452
BshFI	GGCC	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	429
BslI	CCNNNNNNNGG	2 cut(s)	385, 456
BsmAI	GTCTC	2 cut(s)	116, 175
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	61
Bso31I	GGTCTC	1 cut(s)	116
Bsp120I	GGGCCC	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	63, 429
Bsp143I	GATC	1 cut(s)	184
BspACI	CCGC	7 cut(s)	57, 66, 68, 83, 188, 379, 450
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	3 cut(s)	103, 217, 447
BspFNI	CGCG	2 cut(s)	68, 452
BspHI	TCATGA	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	61
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	1 cut(s)	179
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	116
BsrBI	CCGCTC	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	66, 174
BssMI	GATC	1 cut(s)	184
Bst2UI	CCWGG	2 cut(s)	175, 248
Bst6I	CTCTTC	1 cut(s)	451
BstAFI	CTTAAG	1 cut(s)	266
BstC8I	GCNNGC	4 cut(s)	59, 231, 363, 415
BstDEI	CTNAG	3 cut(s)	90, 204, 455
BstDSI	CCRYGG	1 cut(s)	66
BstFNI	CGCG	2 cut(s)	68, 452
BstH2I	RGCGCY	2 cut(s)	51, 107
BstHHI	GCGC	3 cut(s)	50, 106, 454
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	2 cut(s)	116, 175
BstMBI	GATC	1 cut(s)	184
BstMWI	GCNNNNNNNGC	5 cut(s)	54, 74, 80, 83, 103
BstNI	CCWGG	2 cut(s)	175, 248
BstSCI	CCNGG	2 cut(s)	173, 246
BstSLI	GKGCMC	1 cut(s)	63
BstUI	CGCG	2 cut(s)	68, 452
BstV1I	GCAGC	9 cut(s)	32, 58, 61, 93, 98, 220, 263, 397, 419
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	169
Cac8I	GCNNGC	4 cut(s)	59, 231, 363, 415
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	3 cut(s)	50, 106, 454
Cfr13I	GGNCC	3 cut(s)	59, 60, 244
Cfr42I	CCGCGG	1 cut(s)	69
CseI	GACGC	1 cut(s)	12
CviAII	CATG	3 cut(s)	217, 329, 480
DdeI	CTNAG	3 cut(s)	90, 204, 455
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	427
Eco24I	GRGCYC	2 cut(s)	63, 429
Eco31I	GGTCTC	1 cut(s)	116
Eco47I	GGWCC	1 cut(s)	244
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	427
EcoRII	CCWGG	2 cut(s)	173, 246
EcoT38I	GRGCYC	2 cut(s)	63, 429
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	3 cut(s)	220, 332, 483
FaiI	YATR	3 cut(s)	218, 330, 481
FatI	CATG	3 cut(s)	216, 328, 479
FauI	CCCGC	1 cut(s)	50
FblI	GTMKAC	1 cut(s)	144
FriOI	GRGCYC	2 cut(s)	63, 429
FspBI	CTAG	2 cut(s)	390, 414
GlaI	GCGC	3 cut(s)	49, 105, 453
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	157
HaeII	RGCGCY	2 cut(s)	51, 107
HaeIII	GGCC	1 cut(s)	61
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	3 cut(s)	50, 106, 454
Hin1II	CATG	3 cut(s)	220, 332, 483
Hin6I	GCGC	3 cut(s)	48, 104, 452
HinP1I	GCGC	3 cut(s)	48, 104, 452
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	3 cut(s)	257, 393, 431
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	145, 166
Hpy188I	TCNGA	4 cut(s)	93, 114, 280, 398
Hpy188III	TCNNGA	2 cut(s)	206, 217
Hpy8I	GTNNAC	2 cut(s)	145, 166
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	20, 475
HpyF10VI	GCNNNNNNNGC	5 cut(s)	54, 74, 80, 83, 103
HpyF3I	CTNAG	3 cut(s)	90, 204, 455
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	3 cut(s)	220, 332, 483
HspAI	GCGC	3 cut(s)	48, 104, 452
KspI	CCGCGG	1 cut(s)	69
Kzo9I	GATC	1 cut(s)	184
LmnI	GCTCC	2 cut(s)	54, 424
Lsp1109I	GCAGC	9 cut(s)	32, 58, 61, 93, 98, 220, 263, 397, 419
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	2 cut(s)	390, 414
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	186
MbiI	CCGCTC	1 cut(s)	57
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	438
MhlI	GDGCHC	2 cut(s)	63, 429
MluCI	AATT	3 cut(s)	148, 281, 342
MmeI	TCCRAC	1 cut(s)	258
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	3 cut(s)	68, 254, 410
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	175, 248
MvaI	CCWGG	2 cut(s)	175, 248
MvnI	CGCG	2 cut(s)	68, 452
MwoI	GCNNNNNNNGC	5 cut(s)	54, 74, 80, 83, 103
NdeII	GATC	1 cut(s)	184
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	3 cut(s)	220, 332, 483
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	391
PagI	TCATGA	1 cut(s)	216
PfeI	GAWTC	3 cut(s)	257, 393, 431
Psp124BI	GAGCTC	1 cut(s)	429
Psp6I	CCWGG	2 cut(s)	173, 246
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	2 cut(s)	173, 246
PspN4I	GGNNCC	1 cut(s)	61
PspOMI	GGGCCC	1 cut(s)	59
PspPI	GGNCC	3 cut(s)	59, 60, 244
PvuII	CAGCTG	2 cut(s)	254, 410
SacI	GAGCTC	1 cut(s)	429
SacII	CCGCGG	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	184
Sau96I	GGNCC	3 cut(s)	59, 60, 244
ScrFI	CCNGG	2 cut(s)	175, 248
SduI	GDGCHC	2 cut(s)	63, 429
SetI	ASST	8 cut(s)	19, 91, 162, 171, 214, 256, 412, 429
SfaNI	GCATC	1 cut(s)	216
Sfr303I	CCGCGG	1 cut(s)	69
SgrBI	CCGCGG	1 cut(s)	69
SinI	GGWCC	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	266, 419
SmoI	CTYRAG	2 cut(s)	266, 419
Sse9I	AATT	3 cut(s)	148, 281, 342
SsiI	CCGC	7 cut(s)	57, 66, 68, 83, 188, 379, 450
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	2 cut(s)	390, 414
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	2 cut(s)	173, 246
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	3 cut(s)	144, 238, 429
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	3 cut(s)	148, 281, 342
TauI	GCSGC	2 cut(s)	71, 86
TfiI	GAWTC	3 cut(s)	257, 393, 431
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TspDTI	ATGAA	2 cut(s)	17, 205
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	390, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.