Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012927

Physical Location & Seq

Genomic Coordinates Forward (+)

21661923 .. 21663843

Gene Structure 1921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G260300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGAATAAGGGGGGAGGTGCAGCGTCAGGTGGCGGATTGGGCGGTGGGGGAAGTGGGCCCACTGCGGCTGCGGCGGCAGCAGCAGCTCAGAAGCAGAAGGCATTGCTGCAGAGAGTGGAGACGGACATCGCCAACATCGTCGACAATTTCAGCTCCCTCGTCAACGTCTCCAGGGTGAACGATCCTCCTGTTAGAAACTCTCAAGAAGCTTTCATGATGGAGATGCGTGCAGCTAGAATGGTTCAGGCAGCTGATTCTCTGCTCAAGTTGGTGTCAGAACTCAAGCAGACGGCAATCTTTTCGGGATTTGCCTCCCTTAATGACCATGTAGAGCAAAGAATAGTGGAGTTCAACCAGCAGGCTGAGAAGACCGACCAGATGTTGGCTAGAATCGGAGAGGAGGCGGCTGCTAGCCTCAAGGAGCTTGAATCCCATTACTATTCATCTGCACTGAGGACTAGTGAAAACTTGCAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med22

Protein Analysis

160

Amino Acids

16.82

Weight (kDa)

5.41

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07950 AT1G07950 AT1G16430
fragaria_vesca	FvH4_3g13800
malus_domestica	MD02G1009700.v1.1
prunus_persica	Prupe.7G260300_v2.0.a1 Prupe.7G260300_v2.0.a1
pyrus_communis	pycom15g13880
rosa_chinensis	RchiOBHm_Chr5g0022991
rosa_laevigata	RLG00000032687
rosa_multiflora	Rmu_sc0002675.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056350
rosa_rugosa	Rorug05G0076300
rosa_samantha	Rh5AG162500 Rh5BG161700 Rh5CG176400 Rh5DG163100
rosa_wichuraiana	Rw5G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	141
AciI	CCGC	6 cut(s)	33, 42, 65, 71, 74, 404
AclWI	GGATC	1 cut(s)	176
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	352, 428
AhlI	ACTAGT	1 cut(s)	458
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	86, 153, 209, 233, 251, 424
AluI	AGCT	6 cut(s)	86, 153, 209, 233, 251, 424
Alw26I	GTCTC	2 cut(s)	113, 172
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	56
ApaI	GGGCCC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	56, 57
AsuHPI	GGTGA	1 cut(s)	187
AsuNHI	GCTAGC	1 cut(s)	410
BaeGI	GKGCMC	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	60
BbsI	GAAGAC	1 cut(s)	374
BbvI	GCAGC	9 cut(s)	32, 55, 89, 92, 93, 95, 242, 260, 394
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	282, 316
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	113, 172
BcuI	ACTAGT	1 cut(s)	458
BfaI	CTAG	4 cut(s)	234, 387, 411, 459
BfmI	CTRYAG	1 cut(s)	107
Bme1390I	CCNGG	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	56, 57
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	213
BmtI	GCTAGC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	154
BpuEI	CTTGAG	4 cut(s)	186, 248, 266, 401
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	101
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	101
BseMII	CTCAG	3 cut(s)	101, 354, 443
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	60
BseXI	GCAGC	9 cut(s)	32, 55, 89, 92, 93, 95, 242, 260, 394
BsgI	GTGCAG	3 cut(s)	39, 249, 432
BshFI	GGCC	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	113, 172
BsmBI	CGTCTC	2 cut(s)	113, 172
BsnI	GGCC	1 cut(s)	58
Bsp120I	GGGCCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	6 cut(s)	33, 42, 65, 71, 74, 404
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	3 cut(s)	100, 355, 444
BspHI	TCATGA	1 cut(s)	213
BspLI	GGNNCC	1 cut(s)	58
BspMAI	CTGCAG	1 cut(s)	111
BspOI	GCTAGC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	228, 360, 412
BstDEI	CTNAG	3 cut(s)	87, 363, 452
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	113, 172
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 71, 74, 77, 80, 83
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	107
BstSLI	GKGCMC	1 cut(s)	60
BstV1I	GCAGC	9 cut(s)	32, 55, 89, 92, 93, 95, 242, 260, 394
BstV2I	GAAGAC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	112
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	2 cut(s)	60, 449
Cac8I	GCNNGC	3 cut(s)	228, 360, 412
CciI	TCATGA	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	56, 57
CseI	GACGC	1 cut(s)	12
CviAII	CATG	3 cut(s)	214, 326, 477
DdeI	CTNAG	3 cut(s)	87, 363, 452
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EciI	GGCGGA	1 cut(s)	48
Eco24I	GRGCYC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	60
Esp3I	CGTCTC	2 cut(s)	113, 172
FaeI	CATG	3 cut(s)	217, 329, 480
FaiI	YATR	3 cut(s)	215, 327, 478
FatI	CATG	3 cut(s)	213, 325, 476
FblI	GTMKAC	1 cut(s)	141
FriOI	GRGCYC	1 cut(s)	60
FspBI	CTAG	4 cut(s)	234, 387, 411, 459
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	58
HgaI	GACGC	1 cut(s)	12
Hin1II	CATG	3 cut(s)	217, 329, 480
HincII	GTYRAC	2 cut(s)	142, 163
HindII	GTYRAC	2 cut(s)	142, 163
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	3 cut(s)	254, 390, 428
HphI	GGTGA	1 cut(s)	187
Hpy166II	GTNNAC	3 cut(s)	142, 163, 178
Hpy188I	TCNGA	3 cut(s)	90, 277, 395
Hpy188III	TCNNGA	3 cut(s)	203, 214, 303
Hpy8I	GTNNAC	3 cut(s)	142, 163, 178
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	165
HpyCH4V	TGCA	5 cut(s)	20, 109, 230, 449, 472
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 71, 74, 77, 80, 83
HpyF3I	CTNAG	3 cut(s)	87, 363, 452
HpySE526I	ACGT	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	217, 329, 480
Kzo9I	GATC	1 cut(s)	181
LmnI	GCTCC	2 cut(s)	158, 421
LpnPI	CCDG	8 cut(s)	12, 157, 184, 201, 230, 344, 368, 389
Lsp1109I	GCAGC	9 cut(s)	32, 55, 89, 92, 93, 95, 242, 260, 394
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	4 cut(s)	234, 387, 411, 459
MaeII	ACGT	1 cut(s)	165
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	145
MnlI	CCTC	8 cut(s)	8, 167, 195, 322, 391, 394, 425, 447
MseI	TTAA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	6 cut(s)	39, 71, 74, 77, 80, 83
NdeII	GATC	1 cut(s)	181
NheI	GCTAGC	1 cut(s)	410
NlaIII	CATG	3 cut(s)	217, 329, 480
NlaIV	GGNNCC	1 cut(s)	58
PagI	TCATGA	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	3 cut(s)	254, 390, 428
PflMI	CCANNNNNTGG	1 cut(s)	382
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	58
PspOMI	GGGCCC	1 cut(s)	56
PspPI	GGNCC	2 cut(s)	56, 57
PstI	CTGCAG	1 cut(s)	111
PvuII	CAGCTG	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	318
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	2 cut(s)	56, 57
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	9 cut(s)	19, 31, 88, 155, 168, 211, 235, 253, 426
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	107
SmlI	CTYRAG	4 cut(s)	201, 263, 281, 416
SmoI	CTYRAG	4 cut(s)	201, 263, 281, 416
SpeI	ACTAGT	1 cut(s)	458
Sse9I	AATT	1 cut(s)	145
SsiI	CCGC	6 cut(s)	33, 42, 65, 71, 74, 404
SspMI	CTAG	4 cut(s)	234, 387, 411, 459
StyD4I	CCNGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	168
TaqI	TCGA	1 cut(s)	141
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	1 cut(s)	145
TauI	GCSGC	4 cut(s)	68, 74, 77, 407
TfiI	GAWTC	3 cut(s)	254, 390, 428
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	67, 456
TspDTI	ATGAA	3 cut(s)	17, 202, 432
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	67, 456
Van91I	CCANNNNNTGG	1 cut(s)	382
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	4 cut(s)	234, 387, 411, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.