Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002675.1

Orthogroup ID

OG0012927

Physical Location & Seq

Genomic Coordinates Reverse (-)

23208 .. 26635

Gene Structure 3428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002675.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgaacagagggggaggaggaggcggagcaggagccggaggcgggtccggcgccgggagtgggcccacatcggcggcggctttggcggcagctaagaagcagaagaagtggctggagagtgtggaaacagacatcgccaacatcgtcgaccatttcagctacctcgtcaacgtatccagggtgaatgagccacctgttaggaactctcaagaagctttcatgatggagatgcgtgctgctagaatggttcaggcatctgattctctacttaagttggtgtcagacctgaagcagactgcactcttttctggatttgcatcccttaatgaccatgtagaggaaagaatggcagaatttgacaagcaggccgagaagactgaccgcatgttagctagaattggggaggaggcagctgccagcctcaaggagcttgaagcccattattattcttcttcagttcaggcatctgattctctacttaagttggtgtcagacctgaagcagactgcactcttttctggatttgcatcccttaatgaccatgtagaggaaagaatggcagaatttgacaagcaggccgagaagactgaccgcatgttagctagaattggggaggaggcagctgccagcctcaaggagcttgaagcccattattattcttcttcagtaccacatacacatgaaaactacttgcagcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016592 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med22

Protein Analysis

233

Amino Acids

25.25

Weight (kDa)

5.32

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07950 AT1G07950 AT1G16430
fragaria_vesca	FvH4_3g13800
malus_domestica	MD02G1009700.v1.1
prunus_persica	Prupe.7G260300_v2.0.a1 Prupe.7G260300_v2.0.a1
pyrus_communis	pycom15g13880
rosa_chinensis	RchiOBHm_Chr5g0022991
rosa_laevigata	RLG00000032687
rosa_multiflora	Rmu_sc0002675.1_g000006
rosa_roxburghii	Rroxscaffold_1G00056350
rosa_rugosa	Rorug05G0076300
rosa_samantha	Rh5AG162500 Rh5BG161700 Rh5CG176400 Rh5DG163100
rosa_wichuraiana	Rw5G014640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	50
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	7 cut(s)	24, 42, 74, 77, 86, 382, 592
AcsI	RAATTY	2 cut(s)	353, 563
AcuI	CTGAAG	4 cut(s)	308, 438, 518, 648
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	1 cut(s)	669
AfiI	CCNNNNNNNGG	5 cut(s)	42, 54, 60, 337, 547
AflII	CTTAAG	2 cut(s)	269, 479
AgsI	TTSAA	2 cut(s)	434, 644
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	9 cut(s)	92, 159, 215, 392, 413, 430, 602, 623, 640
AluI	AGCT	9 cut(s)	92, 159, 215, 392, 413, 430, 602, 623, 640
AoxI	GGCC	3 cut(s)	62, 366, 576
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	7 cut(s)	89, 236, 410, 413, 620, 623, 694
ApoI	RAATTY	2 cut(s)	353, 563
AspLEI	GCGC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	45, 62, 63
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	45
BaeGI	GKGCMC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	380, 590
BbvI	GCAGC	6 cut(s)	101, 223, 400, 422, 610, 632
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	3 cut(s)	240, 393, 603
BfoI	RGCGCY	1 cut(s)	54
BfrI	CTTAAG	2 cut(s)	269, 479
BfuI	GTATCC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	55, 178
Bme18I	GGWCC	1 cut(s)	45
BmgT120I	GGNCC	3 cut(s)	45, 62, 63
BmiI	GGNNCC	4 cut(s)	34, 46, 52, 64
BmrFI	CCNGG	2 cut(s)	55, 178
BmsI	GCATC	5 cut(s)	219, 263, 326, 473, 536
BpiI	GAAGAC	2 cut(s)	380, 590
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	3 cut(s)	192, 407, 617
BpuMI	CCSGG	1 cut(s)	55
BsaBI	GATNNNNATC	2 cut(s)	316, 526
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 54, 60, 337, 547
Bse8I	GATNNNNATC	2 cut(s)	316, 526
BseBI	CCWGG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	2 cut(s)	317, 527
BseJI	GATNNNNATC	2 cut(s)	316, 526
BseLI	CCNNNNNNNGG	5 cut(s)	42, 54, 60, 337, 547
BseRI	GAGGAG	4 cut(s)	30, 33, 419, 629
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	6 cut(s)	101, 223, 400, 422, 610, 632
BsgI	GTGCAG	2 cut(s)	282, 492
BshFI	GGCC	3 cut(s)	64, 368, 578
BshNI	GGYRCC	1 cut(s)	50
BsiSI	CCGG	3 cut(s)	36, 48, 54
BslI	CCNNNNNNNGG	5 cut(s)	42, 54, 60, 337, 547
BsnI	GGCC	3 cut(s)	64, 368, 578
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	66
BspACI	CCGC	7 cut(s)	24, 42, 74, 77, 86, 382, 592
BspANI	GGCC	3 cut(s)	64, 368, 578
BspHI	TCATGA	1 cut(s)	219
BspLI	GGNNCC	4 cut(s)	34, 46, 52, 64
BspT107I	GGYRCC	1 cut(s)	50
BspTI	CTTAAG	2 cut(s)	269, 479
BssECI	CCNNGG	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	178
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	2 cut(s)	269, 479
BstC8I	GCNNGC	5 cut(s)	234, 366, 418, 576, 628
BstDEI	CTNAG	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	317, 527
BstH2I	RGCGCY	1 cut(s)	54
BstHHI	GCGC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	3 cut(s)	48, 83, 86
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	2 cut(s)	388, 598
BstSCI	CCNGG	2 cut(s)	53, 176
BstSLI	GKGCMC	1 cut(s)	66
BstV1I	GCAGC	6 cut(s)	101, 223, 400, 422, 610, 632
BstV2I	GAAGAC	2 cut(s)	380, 590
BsuI	GTATCC	1 cut(s)	184
BsuRI	GGCC	3 cut(s)	64, 368, 578
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	317, 527
Cac8I	GCNNGC	5 cut(s)	234, 366, 418, 576, 628
CciI	TCATGA	1 cut(s)	219
CfoI	GCGC	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	45, 62, 63
Csp6I	GTAC	1 cut(s)	668
CviAII	CATG	6 cut(s)	220, 332, 385, 542, 595, 680
CviQI	GTAC	1 cut(s)	668
DdeI	CTNAG	1 cut(s)	93
DinI	GGCGCC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	45
Eco57I	CTGAAG	4 cut(s)	308, 438, 518, 648
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	66
EgeI	GGCGCC	1 cut(s)	52
EheI	GGCGCC	1 cut(s)	52
FaeI	CATG	6 cut(s)	223, 335, 388, 545, 598, 683
FaiI	YATR	7 cut(s)	221, 333, 386, 543, 596, 675, 681
FatI	CATG	6 cut(s)	219, 331, 384, 541, 594, 679
FauI	CCCGC	1 cut(s)	35
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	2 cut(s)	304, 514
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	3 cut(s)	240, 393, 603
GlaI	GCGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	134
HaeII	RGCGCY	1 cut(s)	54
HaeIII	GGCC	3 cut(s)	64, 368, 578
HapII	CCGG	3 cut(s)	36, 48, 54
HhaI	GCGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	51
Hin1II	CATG	6 cut(s)	223, 335, 388, 545, 598, 683
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HincII	GTYRAC	2 cut(s)	148, 169
HindII	GTYRAC	2 cut(s)	148, 169
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	260, 470
HpaII	CCGG	3 cut(s)	36, 48, 54
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	2 cut(s)	148, 169
Hpy188I	TCNGA	4 cut(s)	259, 283, 469, 493
Hpy188III	TCNNGA	4 cut(s)	209, 220, 309, 519
Hpy8I	GTNNAC	2 cut(s)	148, 169
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	5 cut(s)	299, 317, 509, 527, 694
HpyF10VI	GCNNNNNNNGC	3 cut(s)	48, 83, 86
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	51
Hsp92II	CATG	6 cut(s)	223, 335, 388, 545, 598, 683
HspAI	GCGC	1 cut(s)	51
KasI	GGCGCC	1 cut(s)	50
LmnI	GCTCC	4 cut(s)	26, 32, 427, 637
Lsp1109I	GCAGC	6 cut(s)	101, 223, 400, 422, 610, 632
LweI	GCATC	5 cut(s)	219, 263, 326, 473, 536
MaeI	CTAG	3 cut(s)	240, 393, 603
MaeII	ACGT	1 cut(s)	171
MboII	GAAGA	7 cut(s)	115, 385, 441, 444, 595, 651, 654
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	353, 396, 563, 606
Mly113I	GGCGCC	1 cut(s)	51
MseI	TTAA	4 cut(s)	270, 324, 480, 534
MslI	CAYNNNNRTG	1 cut(s)	678
MspA1I	CMGCKG	2 cut(s)	413, 623
MspCI	CTTAAG	2 cut(s)	269, 479
MspI	CCGG	3 cut(s)	36, 48, 54
MspR9I	CCNGG	2 cut(s)	55, 178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	3 cut(s)	48, 83, 86
NarI	GGCGCC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	55
NlaIII	CATG	6 cut(s)	223, 335, 388, 545, 598, 683
NlaIV	GGNNCC	4 cut(s)	34, 46, 52, 64
NmeAIII	GCCGAG	2 cut(s)	394, 604
NspI	RCATGY	2 cut(s)	388, 598
PagI	TCATGA	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	260, 470
PluTI	GGCGCC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	4 cut(s)	34, 46, 52, 64
PspOMI	GGGCCC	1 cut(s)	62
PspPI	GGNCC	3 cut(s)	45, 62, 63
PvuII	CAGCTG	2 cut(s)	413, 623
RsaI	GTAC	1 cut(s)	669
RsaNI	GTAC	1 cut(s)	668
RseI	CAYNNNNRTG	1 cut(s)	678
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	270, 324, 480, 534
Sau96I	GGNCC	3 cut(s)	45, 62, 63
ScrFI	CCNGG	2 cut(s)	55, 178
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	5 cut(s)	219, 263, 326, 473, 536
SfoI	GGCGCC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	45
SmiMI	CAYNNNNRTG	1 cut(s)	678
SmlI	CTYRAG	5 cut(s)	207, 269, 422, 479, 632
SmoI	CTYRAG	5 cut(s)	207, 269, 422, 479, 632
Sse9I	AATT	4 cut(s)	353, 396, 563, 606
SsiI	CCGC	7 cut(s)	24, 42, 74, 77, 86, 382, 592
SspDI	GGCGCC	1 cut(s)	50
SspMI	CTAG	3 cut(s)	240, 393, 603
StyD4I	CCNGG	2 cut(s)	53, 176
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	147
TasI	AATT	4 cut(s)	353, 396, 563, 606
TauI	GCSGC	3 cut(s)	77, 80, 89
TfiI	GAWTC	2 cut(s)	260, 470
Tru1I	TTAA	4 cut(s)	270, 324, 480, 534
Tru9I	TTAA	4 cut(s)	270, 324, 480, 534
TseI	GCWGC	7 cut(s)	89, 236, 410, 413, 620, 623, 694
TspDTI	ATGAA	3 cut(s)	17, 208, 696
Vha464I	CTTAAG	2 cut(s)	269, 479
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	353, 563
XceI	RCATGY	2 cut(s)	388, 598
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	3 cut(s)	240, 393, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.