FvH4_3g14440

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013638
Physical Location & Seq
Reverse (-)
8913149 .. 8915002
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14440.t1

Sequence Viewer

Length: 1134 bp
ATGGAAACCAGCCGAGGGTGCATGAGAATTTGCATTCTTCTTCTCTATTTGATTGCAGCAACTATTTCCTTCACTCAATGTGATGCAAGAAAATCAATGAGATTACTAAAGGGTCTTACAAATCCCCCTCCAACCCATCACAAAAGTCTGTTCCTCAGAACTGCAAAGAAGTTGAATCTAGTGAAGCGCATTGAGTATTTCCCATTTGGTTCTTCAAAGCAACAAAACGGAGAACCCTATGGTTTGAATTCACCACTTTCAATGCCACCTTTTGATTCACTAGCTCCAGTTTCCTTGCCTAATCCAAATGCTCCTCCATTTTGTACTTACCCACCCAACACTCCACAAACCCCCTCTACAACTACTCCAACACCCACCACAACATCACCTCCAAGCCCACCAAGCCCAGACTCACCTTATCTATACATCCCACCAATTCTCCCTATGCAAAGCCCACCACCAGGCCCAATAATTACTATCCCAGGCTCACCGCAATCTATCTCCGCCCCCAATCTGCCCCCTCCCGGAACTATGCCCGGGCCGCCAGAGTCTGTACCAAGTCCTACAATCTATTTCCCTGGCCCACCGCAATCCATCTTGACCCCTAGTCCGCCCGATGTTGTGCCGAGTCCCGTTACCTATATTCCAGGCCCACCTCAATCTATCTCGACCCCTAATCCACCCGAAATTGTCCCAAGCCCACCCGATTATGAGCCCAGCCCTCCAGATTATTCTATCCCGAGCCCGACTTCTTTCGTCCCGTCTCCTCCCTATGGGTTCCAACCGAGCCCACCAGTGTTCGAACCTCCGGTTGTGTTTCCTCCGCCGACCACACCGCCAAGTCCAAAGAAAGGCCCGATAGCGGCTTTGTGGTGCGTGGCCAAGCCGTCAGTACCCGACCCGATCATCCAAGAAGCCATGAACTACGCTTGCGGGTCCGGAGCAGATTGTGATGCCATTCAGCCCAATGGGTCATGCTTTCAGCCCGACTCATTGTTTGCCCATGCTTCATTTGCCTTCAATAGTTATTGGCAAAGGACCAAGGTTGCTGGTGGCACATGTGATTTTGGAGGAACAGCCATACTAGTCACAGCTGATCCAAGTTATGATGGGTGCCGATTTGACTATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

378

Amino Acids

40.08

Weight (kDa)

5.6

Isoelectric Point (pI)

81.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 290 - 360 8.1e-23 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1113
AccIII TCCGGA 1 cut(s) 938
AciI CCGC 9 cut(s) 491, 504, 542, 587, 611, 824, 836, 863, 933
AclWI GGATC 1 cut(s) 1091
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 2 cut(s) 27, 247
AfaI GTAC 3 cut(s) 325, 555, 894
AfiI CCNNNNNNNGG 6 cut(s) 15, 461, 524, 773, 851, 862
AflIII ACRYGT 1 cut(s) 1058
AgsI TTSAA 5 cut(s) 175, 216, 247, 261, 1021
AhdI GACNNNNNGTC 1 cut(s) 606
AhlI ACTAGT 1 cut(s) 1084
AjnI CCWGG 4 cut(s) 460, 481, 577, 646
AluBI AGCT 2 cut(s) 284, 1094
AluI AGCT 2 cut(s) 284, 1094
Alw26I GTCTC 1 cut(s) 768
AlwI GGATC 1 cut(s) 1091
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 2 cut(s) 536, 739
Aor13HI TCCGGA 1 cut(s) 938
AoxI GGCC 6 cut(s) 463, 539, 580, 649, 853, 879
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 2 cut(s) 27, 247
ArsI GACNNNNNNTTYG 2 cut(s) 980, 1012
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 7 cut(s) 464, 539, 581, 650, 854, 936, 1038
AsuC2I CCSGG 3 cut(s) 525, 537, 538
AsuHPI GGTGA 4 cut(s) 243, 378, 405, 480
AsuII TTCGAA 1 cut(s) 801
AvaI CYCGRG 2 cut(s) 536, 739
AvaII GGWCC 2 cut(s) 936, 1038
BalI TGGCCA 1 cut(s) 881
BanI GGYRCC 1 cut(s) 1113
BanII GRGCYC 3 cut(s) 717, 746, 791
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 144, 602, 1103
BceAI ACGGC 1 cut(s) 871
BciT130I CCWGG 4 cut(s) 462, 483, 579, 648
BcnI CCSGG 3 cut(s) 525, 537, 538
BcoDI GTCTC 1 cut(s) 768
BcuI ACTAGT 1 cut(s) 1084
BfaI CTAG 4 cut(s) 179, 281, 606, 1085
BisI GCNGC 3 cut(s) 57, 542, 864
BlsI GCNGC 3 cut(s) 58, 543, 865
Bme1390I CCNGG 7 cut(s) 462, 483, 525, 537, 538, 579, 648
Bme18I GGWCC 2 cut(s) 936, 1038
BmeRI GACNNNNNGTC 1 cut(s) 606
BmeT110I CYCGRG 2 cut(s) 536, 739
BmgT120I GGNCC 7 cut(s) 464, 539, 581, 650, 854, 936, 1038
BmiI GGNNCC 3 cut(s) 779, 937, 1115
BmrFI CCNGG 7 cut(s) 462, 483, 525, 537, 538, 579, 648
BmsI GCATC 2 cut(s) 73, 943
BpmI CTGGAG 2 cut(s) 270, 708
Bpu14I TTCGAA 1 cut(s) 801
BpuMI CCSGG 3 cut(s) 525, 537, 538
BsaJI CCNNGG 5 cut(s) 13, 481, 536, 577, 1041
BsaWI WCCGGW 2 cut(s) 808, 938
BsaXI ACNNNNNCTCC 6 cut(s) 349, 373, 379, 403, 423, 453
Bsc4I CCNNNNNNNGG 6 cut(s) 15, 461, 524, 773, 851, 862
Bse1I ACTGG 2 cut(s) 287, 794
BseAI TCCGGA 1 cut(s) 938
BseBI CCWGG 4 cut(s) 462, 483, 579, 648
BseDI CCNNGG 5 cut(s) 13, 481, 536, 577, 1041
BseGI GGATG 2 cut(s) 426, 906
BseLI CCNNNNNNNGG 6 cut(s) 15, 461, 524, 773, 851, 862
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 287, 794
BseRI GAGGAG 2 cut(s) 303, 756
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 716
BshFI GGCC 6 cut(s) 465, 541, 582, 651, 855, 881
BshNI GGYRCC 1 cut(s) 1113
BsiHKCI CYCGRG 2 cut(s) 536, 739
BsiSI CCGG 4 cut(s) 525, 537, 809, 939
BslFI GGGAC 3 cut(s) 615, 677, 743
BslI CCNNNNNNNGG 6 cut(s) 15, 461, 524, 773, 851, 862
BsmAI GTCTC 1 cut(s) 768
BsmBI CGTCTC 1 cut(s) 768
BsmFI GGGAC 3 cut(s) 615, 677, 743
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 6 cut(s) 465, 541, 582, 651, 855, 881
BsoBI CYCGRG 2 cut(s) 536, 739
Bsp119I TTCGAA 1 cut(s) 801
Bsp1286I GDGCHC 3 cut(s) 717, 746, 791
Bsp13I TCCGGA 1 cut(s) 938
Bsp143I GATC 2 cut(s) 903, 1096
BspACI CCGC 9 cut(s) 491, 504, 542, 587, 611, 824, 836, 863, 933
BspANI GGCC 6 cut(s) 465, 541, 582, 651, 855, 881
BspCNI CTCAG 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 938
BspLI GGNNCC 3 cut(s) 779, 937, 1115
BspPI GGATC 1 cut(s) 1091
BspT104I TTCGAA 1 cut(s) 801
BspT107I GGYRCC 1 cut(s) 1113
BsrI ACTGG 2 cut(s) 287, 794
BssECI CCNNGG 5 cut(s) 13, 481, 536, 577, 1041
BssMI GATC 2 cut(s) 903, 1096
BssT1I CCWWGG 1 cut(s) 1041
Bst2UI CCWGG 4 cut(s) 462, 483, 579, 648
BstBI TTCGAA 1 cut(s) 801
BstC8I GCNNGC 1 cut(s) 931
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 426, 906
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 906, 1099
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 2 cut(s) 903, 1096
BstMWI GCNNNNNNNGC 4 cut(s) 18, 402, 541, 1013
BstNI CCWGG 4 cut(s) 462, 483, 579, 648
BstNSI RCATGY 1 cut(s) 1062
BstSCI CCNGG 7 cut(s) 460, 481, 523, 535, 536, 577, 646
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 6 cut(s) 465, 541, 582, 651, 855, 881
BtsCI GGATG 2 cut(s) 426, 906
BtsIMutI CAGTG 1 cut(s) 801
Cac8I GCNNGC 1 cut(s) 931
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 7 cut(s) 464, 539, 581, 650, 854, 936, 1038
Cfr9I CCCGGG 1 cut(s) 536
Csp6I GTAC 3 cut(s) 324, 554, 893
CviAII CATG 5 cut(s) 22, 919, 975, 1004, 1059
CviQI GTAC 3 cut(s) 324, 554, 893
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 905, 1098
DpnII GATC 2 cut(s) 903, 1096
DriI GACNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 879
Eam1105I GACNNNNNGTC 1 cut(s) 606
EciI GGCGGA 3 cut(s) 493, 600, 813
Eco130I CCWWGG 1 cut(s) 1041
Eco24I GRGCYC 3 cut(s) 717, 746, 791
Eco47I GGWCC 2 cut(s) 936, 1038
Eco88I CYCGRG 2 cut(s) 536, 739
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 4 cut(s) 460, 481, 577, 646
EcoT14I CCWWGG 1 cut(s) 1041
EcoT38I GRGCYC 3 cut(s) 717, 746, 791
ErhI CCWWGG 1 cut(s) 1041
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 5 cut(s) 25, 922, 978, 1007, 1062
FaqI GGGAC 3 cut(s) 615, 677, 743
FatI CATG 5 cut(s) 21, 918, 974, 1003, 1058
FauI CCCGC 1 cut(s) 926
Fnu4HI GCNGC 3 cut(s) 57, 542, 864
FokI GGATG 2 cut(s) 413, 893
FriOI GRGCYC 3 cut(s) 717, 746, 791
Fsp4HI GCNGC 3 cut(s) 57, 542, 864
FspBI CTAG 4 cut(s) 179, 281, 606, 1085
GlaI GCGC 1 cut(s) 188
GluI GCNGC 3 cut(s) 57, 542, 864
GsaI CCCAGC 1 cut(s) 720
GsuI CTGGAG 2 cut(s) 270, 708
HaeIII GGCC 6 cut(s) 465, 541, 582, 651, 855, 881
HapII CCGG 4 cut(s) 525, 537, 809, 939
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 25, 922, 978, 1007, 1062
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 6 cut(s) 175, 275, 410, 548, 628, 989
HpaII CCGG 4 cut(s) 525, 537, 809, 939
HphI GGTGA 4 cut(s) 243, 378, 405, 480
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 5 cut(s) 598, 667, 725, 739, 939
HpyAV CCTTC 2 cut(s) 79, 1027
HpyCH4V TGCA 6 cut(s) 21, 33, 56, 86, 164, 448
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 402, 541, 1013
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 5 cut(s) 25, 922, 978, 1007, 1062
HspAI GCGC 1 cut(s) 187
Kpn2I TCCGGA 1 cut(s) 938
Kzo9I GATC 2 cut(s) 903, 1096
LmnI GCTCC 3 cut(s) 289, 316, 941
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 73, 943
MaeI CTAG 4 cut(s) 179, 281, 606, 1085
MaeIII GTNAC 2 cut(s) 634, 1087
MalI GATC 2 cut(s) 905, 1098
MboI GATC 2 cut(s) 903, 1096
MboII GAAGA 3 cut(s) 29, 32, 204
MhlI GDGCHC 3 cut(s) 717, 746, 791
MlsI TGGCCA 1 cut(s) 881
MluCI AATT 5 cut(s) 27, 247, 435, 471, 687
MluNI TGGCCA 1 cut(s) 881
MlyI GAGTC 4 cut(s) 404, 557, 637, 983
MmeI TCCRAC 3 cut(s) 155, 392, 805
Mox20I TGGCCA 1 cut(s) 881
MroI TCCGGA 1 cut(s) 938
MscI TGGCCA 1 cut(s) 881
Msp20I TGGCCA 1 cut(s) 881
MspA1I CMGCKG 1 cut(s) 1094
MspI CCGG 4 cut(s) 525, 537, 809, 939
MspR9I CCNGG 7 cut(s) 462, 483, 525, 537, 538, 579, 648
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 4 cut(s) 462, 483, 579, 648
MwoI GCNNNNNNNGC 4 cut(s) 18, 402, 541, 1013
NciI CCSGG 3 cut(s) 525, 537, 538
NdeII GATC 2 cut(s) 903, 1096
NlaIII CATG 5 cut(s) 25, 922, 978, 1007, 1062
NlaIV GGNNCC 3 cut(s) 779, 937, 1115
NmeAIII GCCGAG 2 cut(s) 38, 651
NmuCI GTSAC 1 cut(s) 1087
NspI RCATGY 1 cut(s) 1062
NspV TTCGAA 1 cut(s) 801
PciI ACATGT 1 cut(s) 1058
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 2 cut(s) 175, 275
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 3 cut(s) 58, 543, 865
PleI GAGTC 4 cut(s) 404, 556, 636, 983
PpsI GAGTC 4 cut(s) 404, 556, 636, 983
PscI ACATGT 1 cut(s) 1058
Psp6I CCWGG 4 cut(s) 460, 481, 577, 646
PspFI CCCAGC 1 cut(s) 716
PspGI CCWGG 4 cut(s) 460, 481, 577, 646
PspN4I GGNNCC 3 cut(s) 779, 937, 1115
PspPI GGNCC 7 cut(s) 464, 539, 581, 650, 854, 936, 1038
PstNI CAGNNNCTG 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 1094
RsaI GTAC 3 cut(s) 325, 555, 894
RsaNI GTAC 3 cut(s) 324, 554, 893
SatI GCNGC 3 cut(s) 57, 542, 864
Sau3AI GATC 2 cut(s) 903, 1096
Sau96I GGNCC 7 cut(s) 464, 539, 581, 650, 854, 936, 1038
SchI GAGTC 4 cut(s) 404, 557, 637, 983
ScrFI CCNGG 7 cut(s) 462, 483, 525, 537, 538, 579, 648
SduI GDGCHC 3 cut(s) 717, 746, 791
SetI ASST 9 cut(s) 271, 286, 391, 418, 641, 658, 808, 1047, 1096
SfaNI GCATC 2 cut(s) 73, 943
SfuI TTCGAA 1 cut(s) 801
SinI GGWCC 2 cut(s) 936, 1038
SmaI CCCGGG 1 cut(s) 538
SpeI ACTAGT 1 cut(s) 1084
SrfI GCCCGGGC 1 cut(s) 538
Sse9I AATT 5 cut(s) 27, 247, 435, 471, 687
SsiI CCGC 9 cut(s) 491, 504, 542, 587, 611, 824, 836, 863, 933
SspMI CTAG 4 cut(s) 179, 281, 606, 1085
StyD4I CCNGG 7 cut(s) 460, 481, 523, 535, 536, 577, 646
StyI CCWWGG 1 cut(s) 1041
TaqI TCGA 2 cut(s) 668, 801
TasI AATT 5 cut(s) 27, 247, 435, 471, 687
TatI WGTACW 1 cut(s) 323
TauI GCSGC 2 cut(s) 544, 866
TfiI GAWTC 2 cut(s) 175, 275
TscAI CASTG 1 cut(s) 801
TseFI GTSAC 1 cut(s) 1087
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 1087
TspDTI ATGAA 2 cut(s) 935, 999
TspGWI ACGGA 1 cut(s) 243
TspMI CCCGGG 1 cut(s) 536
TspRI CASTG 1 cut(s) 801
VpaK11BI GGWCC 2 cut(s) 936, 1038
XapI RAATTY 2 cut(s) 27, 247
XceI RCATGY 1 cut(s) 1062
XmaI CCCGGG 1 cut(s) 536
XspI CTAG 4 cut(s) 179, 281, 606, 1085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.