Rroxscaffold_1G00055440

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013638
Physical Location & Seq
Forward (+)
76847740 .. 76849182
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00055440.1

Sequence Viewer

Length: 1023 bp
ATGGAAACAAGCAGAGAGTGCATGAGAATTTGCATTCTTCTTCTCTATTTGACTGCAGCAACTATTTCATTCACTCCATGTGATGCAAGAAAATCACATAGATTACTAAAGGGTCTTACAAAACCCCCTCCAACCCGTCACAGAAGTCTGTTTCTCAGAACTGCAAAGAAGTTGAATTTAGTAAAGCGCATTGAGTATAACCCATTTGGTTCATCAAAGCAACAAAACCAAGAACCCTATGGTTTGAATTCACCACTTTCACTGCCACCTTATGATTCACTAGCTCCACTTTCCTTGCCTGATGCAAATGCTCCTCCATTTTGTACTTACCCACCCAACACTCCACAAACCCCCTCTTCAGCAACTCCAACCACATCGTCACCCCCAAGCCCACAATCACCTTATCTTTACGTTCCACCAATTCTTCCCATGCAAAGCCCACCACCAGTCCCAATAGGCTCTATCCCAGGCCCACCACAATCTATCTCCGTGCCTGGGCCGCCGGAGTCTATACCGAGTCCGACCATCTACTTCCCAGGCCCACCGCAATCTATCCCGACCCCTAATCCACCAGAAACAGTCCCAAGCCCACCTGATTATGAGCCCAGCCCACCATATTTTTCTATTCCAAGCCCGCCTTCTTTCGTCCCATCTCCTCCCTATGGGTTCCAACCAAGCCCACCAGTGTTCGAACCCCCTGTTGTGTTCCCTCCACCAACCACTCCGCCGAGTCCAAAGAAAGGCCCGACAACGGCCCTGTGGTGCGTGGCCAAGCCGTCGGTGCCCGACCCAATCATCCAAGAAGCCATGAACTACGCTTGCGGGTCCGGAGCAGATTGTGATGCCATTCTGCCCAATGGGTCATGCTTTGAGCCCAACACATTGTTTGCCCATGCTTCGTTTGCCTTCAATAGTTACTGGCAGAGGACCAGGGTAGCTGGTGGCACCTGTTCGTTTGGAGGAACAGCCATACTAGTCACAGTTGATCCAAGTTATGATGGGTGCCGGTTTGACTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

340

Amino Acids

36.57

Weight (kDa)

7.47

Isoelectric Point (pI)

82.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 253 - 323 1e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 781, 944, 1002
AccIII TCCGGA 1 cut(s) 827
AciI CCGC 5 cut(s) 500, 545, 635, 725, 822
AclWI GGATC 1 cut(s) 980
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 3 cut(s) 27, 175, 247
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 4 cut(s) 495, 662, 740, 751
AgsI TTSAA 3 cut(s) 175, 247, 910
AhlI ACTAGT 1 cut(s) 973
AjnI CCWGG 4 cut(s) 466, 493, 535, 929
AjuI GAANNNNNNNTTGG 2 cut(s) 622, 654
AluBI AGCT 2 cut(s) 284, 938
AluI AGCT 2 cut(s) 284, 938
AlwI GGATC 1 cut(s) 980
Aor13HI TCCGGA 1 cut(s) 827
AoxI GGCC 6 cut(s) 469, 497, 538, 742, 753, 768
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 3 cut(s) 27, 175, 247
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 7 cut(s) 470, 497, 539, 743, 754, 825, 927
AsuHPI GGTGA 3 cut(s) 243, 372, 390
AsuII TTCGAA 1 cut(s) 690
AvaII GGWCC 2 cut(s) 825, 927
BaeGI GKGCMC 1 cut(s) 786
BalI TGGCCA 1 cut(s) 770
BanI GGYRCC 3 cut(s) 781, 944, 1002
BanII GRGCYC 2 cut(s) 606, 876
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 533, 658, 992
BceAI ACGGC 2 cut(s) 760, 768
BciT130I CCWGG 4 cut(s) 468, 495, 537, 931
BcuI ACTAGT 1 cut(s) 973
BfaI CTAG 2 cut(s) 281, 974
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 2 cut(s) 57, 500
BlsI GCNGC 2 cut(s) 58, 501
Bme1390I CCNGG 4 cut(s) 468, 495, 537, 931
Bme18I GGWCC 2 cut(s) 825, 927
BmgT120I GGNCC 7 cut(s) 470, 497, 539, 743, 754, 825, 927
BmiI GGNNCC 5 cut(s) 668, 783, 826, 946, 1004
BmrFI CCNGG 4 cut(s) 468, 495, 537, 931
BmsI GCATC 3 cut(s) 73, 292, 832
Bpu14I TTCGAA 1 cut(s) 690
BsaJI CCNNGG 4 cut(s) 466, 494, 535, 930
BsaWI WCCGGW 1 cut(s) 827
Bsc4I CCNNNNNNNGG 4 cut(s) 495, 662, 740, 751
Bse118I RCCGGY 1 cut(s) 1005
Bse1I ACTGG 3 cut(s) 446, 683, 923
BseAI TCCGGA 1 cut(s) 827
BseBI CCWGG 4 cut(s) 468, 495, 537, 931
BseDI CCNNGG 4 cut(s) 466, 494, 535, 930
BseGI GGATG 1 cut(s) 795
BseLI CCNNNNNNNGG 4 cut(s) 495, 662, 740, 751
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 3 cut(s) 446, 683, 923
BseRI GAGGAG 2 cut(s) 303, 645
BseSI GKGCMC 1 cut(s) 786
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 605
BshFI GGCC 6 cut(s) 471, 499, 540, 744, 755, 770
BshNI GGYRCC 3 cut(s) 781, 944, 1002
BsiSI CCGG 3 cut(s) 503, 828, 1006
BslFI GGGAC 3 cut(s) 434, 566, 632
BslI CCNNNNNNNGG 4 cut(s) 495, 662, 740, 751
BsmFI GGGAC 3 cut(s) 434, 566, 632
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 6 cut(s) 471, 499, 540, 744, 755, 770
Bsp119I TTCGAA 1 cut(s) 690
Bsp1286I GDGCHC 3 cut(s) 606, 786, 876
Bsp13I TCCGGA 1 cut(s) 827
Bsp143I GATC 1 cut(s) 985
BspACI CCGC 5 cut(s) 500, 545, 635, 725, 822
BspANI GGCC 6 cut(s) 471, 499, 540, 744, 755, 770
BspCNI CTCAG 1 cut(s) 168
BspEI TCCGGA 1 cut(s) 827
BspLI GGNNCC 5 cut(s) 668, 783, 826, 946, 1004
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 980
BspT104I TTCGAA 1 cut(s) 690
BspT107I GGYRCC 3 cut(s) 781, 944, 1002
BsrFI RCCGGY 1 cut(s) 1005
BsrI ACTGG 3 cut(s) 446, 683, 923
BssAI RCCGGY 1 cut(s) 1005
BssECI CCNNGG 4 cut(s) 466, 494, 535, 930
BssMI GATC 1 cut(s) 985
Bst2UI CCWGG 4 cut(s) 468, 495, 537, 931
Bst4CI ACNGT 2 cut(s) 580, 982
Bst6I CTCTTC 1 cut(s) 361
BstAPI GCANNNNNTGC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 635, 820
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 795
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 988
BstMBI GATC 1 cut(s) 985
BstMWI GCNNNNNNNGC 4 cut(s) 18, 499, 781, 902
BstNI CCWGG 4 cut(s) 468, 495, 537, 931
BstSCI CCNGG 4 cut(s) 466, 493, 535, 929
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 786
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 6 cut(s) 471, 499, 540, 744, 755, 770
BtsCI GGATG 1 cut(s) 795
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 260, 690
Cac8I GCNNGC 2 cut(s) 635, 820
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 1005
Cfr13I GGNCC 7 cut(s) 470, 497, 539, 743, 754, 825, 927
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 6 cut(s) 22, 78, 430, 808, 864, 893
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 987
DpnII GATC 1 cut(s) 985
EaeI YGGCCR 1 cut(s) 768
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
EciI GGCGGA 1 cut(s) 714
Eco24I GRGCYC 2 cut(s) 606, 876
Eco47I GGWCC 2 cut(s) 825, 927
Eco57I CTGAAG 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 4 cut(s) 466, 493, 535, 929
EcoT38I GRGCYC 2 cut(s) 606, 876
FaeI CATG 6 cut(s) 25, 81, 433, 811, 867, 896
FalI AAGNNNNNCTT 2 cut(s) 622, 654
FaqI GGGAC 3 cut(s) 434, 566, 632
FatI CATG 6 cut(s) 21, 77, 429, 807, 863, 892
FauI CCCGC 2 cut(s) 642, 815
Fnu4HI GCNGC 2 cut(s) 57, 500
FokI GGATG 1 cut(s) 782
FriOI GRGCYC 2 cut(s) 606, 876
Fsp4HI GCNGC 2 cut(s) 57, 500
FspBI CTAG 2 cut(s) 281, 974
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 57, 500
GsaI CCCAGC 1 cut(s) 609
HaeIII GGCC 6 cut(s) 471, 499, 540, 744, 755, 770
HapII CCGG 3 cut(s) 503, 828, 1006
HhaI GCGC 1 cut(s) 189
Hin1II CATG 6 cut(s) 25, 81, 433, 811, 867, 896
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 4 cut(s) 275, 506, 517, 730
HpaII CCGG 3 cut(s) 503, 828, 1006
HphI GGTGA 3 cut(s) 243, 372, 390
Hpy188I TCNGA 2 cut(s) 158, 522
Hpy188III TCNNGA 2 cut(s) 556, 828
Hpy99I CGWCG 1 cut(s) 781
HpyAV CCTTC 2 cut(s) 648, 916
HpyCH4III ACNGT 2 cut(s) 580, 982
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 7 cut(s) 21, 33, 56, 86, 164, 305, 433
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 499, 781, 902
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 6 cut(s) 25, 81, 433, 811, 867, 896
HspAI GCGC 1 cut(s) 187
Kpn2I TCCGGA 1 cut(s) 827
Kzo9I GATC 1 cut(s) 985
LmnI GCTCC 3 cut(s) 289, 316, 830
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 3 cut(s) 73, 292, 832
MaeI CTAG 2 cut(s) 281, 974
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 4 cut(s) 137, 378, 914, 976
MalI GATC 1 cut(s) 987
MboI GATC 1 cut(s) 985
MboII GAAGA 4 cut(s) 29, 32, 348, 416
MhlI GDGCHC 3 cut(s) 606, 786, 876
MlsI TGGCCA 1 cut(s) 770
MluCI AATT 4 cut(s) 27, 175, 247, 420
MluNI TGGCCA 1 cut(s) 770
MlyI GAGTC 3 cut(s) 515, 526, 739
MmeI TCCRAC 4 cut(s) 155, 392, 545, 694
MnlI CCTC 7 cut(s) 138, 324, 364, 666, 720, 918, 953
Mox20I TGGCCA 1 cut(s) 770
MroI TCCGGA 1 cut(s) 827
MscI TGGCCA 1 cut(s) 770
Msp20I TGGCCA 1 cut(s) 770
MspI CCGG 3 cut(s) 503, 828, 1006
MspR9I CCNGG 4 cut(s) 468, 495, 537, 931
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 4 cut(s) 468, 495, 537, 931
MwoI GCNNNNNNNGC 4 cut(s) 18, 499, 781, 902
NdeII GATC 1 cut(s) 985
NlaIII CATG 6 cut(s) 25, 81, 433, 811, 867, 896
NlaIV GGNNCC 5 cut(s) 668, 783, 826, 946, 1004
NmeAIII GCCGAG 1 cut(s) 753
NmuCI GTSAC 3 cut(s) 137, 378, 976
NspV TTCGAA 1 cut(s) 690
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 58, 501
PleI GAGTC 3 cut(s) 514, 525, 738
PpsI GAGTC 3 cut(s) 514, 525, 738
Psp6I CCWGG 4 cut(s) 466, 493, 535, 929
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 4 cut(s) 466, 493, 535, 929
PspN4I GGNNCC 5 cut(s) 668, 783, 826, 946, 1004
PspPI GGNCC 7 cut(s) 470, 497, 539, 743, 754, 825, 927
PstI CTGCAG 1 cut(s) 58
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SatI GCNGC 2 cut(s) 57, 500
Sau3AI GATC 1 cut(s) 985
Sau96I GGNCC 7 cut(s) 470, 497, 539, 743, 754, 825, 927
SchI GAGTC 3 cut(s) 515, 526, 739
ScrFI CCNGG 4 cut(s) 468, 495, 537, 931
SduI GDGCHC 3 cut(s) 606, 786, 876
SetI ASST 7 cut(s) 271, 286, 403, 414, 595, 940, 950
SfaNI GCATC 3 cut(s) 73, 292, 832
SfcI CTRYAG 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 690
SinI GGWCC 2 cut(s) 825, 927
SpeI ACTAGT 1 cut(s) 973
Sse9I AATT 4 cut(s) 27, 175, 247, 420
SsiI CCGC 5 cut(s) 500, 545, 635, 725, 822
SspMI CTAG 2 cut(s) 281, 974
StyD4I CCNGG 4 cut(s) 466, 493, 535, 929
TaaI ACNGT 2 cut(s) 580, 982
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 690
TasI AATT 4 cut(s) 27, 175, 247, 420
TatI WGTACW 1 cut(s) 323
TauI GCSGC 1 cut(s) 502
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 2 cut(s) 267, 690
TseFI GTSAC 3 cut(s) 137, 378, 976
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 3 cut(s) 137, 378, 976
TspDTI ATGAA 3 cut(s) 57, 201, 824
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 2 cut(s) 267, 690
VpaK11BI GGWCC 2 cut(s) 825, 927
XapI RAATTY 3 cut(s) 27, 175, 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 2 cut(s) 281, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.