pycom05g21370

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013638
Physical Location & Seq
Forward (+)
23996034 .. 23997561
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g21370.3

Sequence Viewer

Length: 1110 bp
ATGCAACCAATAATGTTAGCGAGGAGCCCTTCCTGCTTCCCGTCTTCGAGTTTTCTGGGAGTTGGAGCAAAAGGAGAAGACACGAAGAAGAAGCAGCAGATTCGACTGGAGTTTCGGGTTCCGTTGCAAGTCATGGAAACGACTAGAAATCACACAAAATTTTTAATTCTTTTTCTCTATCTTACTGTGGCAACTATTTCCTTCACTCAATGTGAGGCAATCAGATCAATAAGATTTTTAAAAGGCACTCTTCCAAGTCCATCAAAGCACAGCAACTTGTTTCTTAGTGCTGCAAACAAATTGGACTTGATCAACCGCATTGACTTTCCATTGGAGGGATCAAAGGACATCCAACCCTACGGTGTGGATTCACCATTCACATTGCCACCTTATGATTCATTACCTCCAATATCCTTGCCAGAAAATGCACCTCCATACTATACAACTCCGCCCAATACCCCAGAAACTCCCCCTACAACCGTCCCACCGCCTATTGTGTTATCACCACCAAGCATCCTTCCGATCCAAATCCCACCTCCAAGCCCAACAAGCATTCTCCCAGGCCCACCAGAATCCATCTCCACTCCTAATCTGCCCGGTACTGTCCCGAGCCCGACTGACTTTATACCTAGTCCCACTATCTACATCCCAAGCCCACCTTACTTCGAGCCCAGCCCGCCCGGTCTTGTTCCAAACCCGCCTTCTTCTGTCCCGTCGCCTTTTGGGTTTCAACCAAGCCCGCCAGTTTTCCTACCCCCCATTGTGTTCCCTCCGCCCACTACGCCGCCGAGTCCAAGACGAGGCCCGACAGCGCCTTTGTGGTGCGTGGCTAAGCCGTCTGTGCCCGACCCCATCATTCAAGAAGCTATGAATTATGCTTGTGGGTCGGGAGCGGATTGCGCTTCCATCCAGCCTAATGGGCCGTGTTTCAATCCAGATTTATTGTTGGCCCATGCCTCCTACGCCTTCAATAGTTACTGGCAAAGGACTAAGGTTGCTGGTGGCTCTTGTTCTTTTGGAGGAACTGCTATACTAGTTACTGTTGATCCAAGTAAGGGAGTACATATTTCAGTAACTTCACTAACACTAACTTCTTGTTTCGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

370

Amino Acids

39.52

Weight (kDa)

6.88

Isoelectric Point (pI)

69.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 893
AciI CCGC 9 cut(s) 316, 449, 488, 677, 698, 740, 773, 785, 893
AclWI GGATC 3 cut(s) 346, 517, 1040
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 2 cut(s) 601, 1062
AfiI CCNNNNNNNGG 3 cut(s) 335, 800, 1055
AgsI TTSAA 4 cut(s) 731, 860, 931, 970
AhlI ACTAGT 1 cut(s) 1033
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 685, 717
AluBI AGCT 1 cut(s) 866
AluI AGCT 1 cut(s) 866
AlwI GGATC 3 cut(s) 346, 517, 1040
Ama87I CYCGRG 1 cut(s) 607
AoxI GGCC 4 cut(s) 562, 802, 920, 948
ApeKI GCWGC 2 cut(s) 94, 290
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 4 cut(s) 96, 128, 799, 831
AspLEI GCGC 2 cut(s) 814, 902
AspS9I GGNCC 4 cut(s) 563, 803, 920, 949
AsuC2I CCSGG 2 cut(s) 597, 681
AsuHPI GGTGA 2 cut(s) 363, 495
AsuII TTCGAA 1 cut(s) 1101
AvaI CYCGRG 1 cut(s) 607
BaeGI GKGCMC 1 cut(s) 846
BanII GRGCYC 3 cut(s) 29, 614, 672
BbsI GAAGAC 2 cut(s) 36, 84
BbvI GCAGC 2 cut(s) 106, 277
BccI CCATC 4 cut(s) 268, 584, 860, 914
BceAI ACGGC 2 cut(s) 820, 907
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 561
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 597, 681
BcuI ACTAGT 1 cut(s) 1033
BfaI CTAG 3 cut(s) 144, 630, 1034
BfoI RGCGCY 1 cut(s) 815
BglI GCCNNNNNGGC 1 cut(s) 919
BisI GCNGC 3 cut(s) 95, 291, 785
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 3 cut(s) 96, 292, 786
Bme1390I CCNGG 3 cut(s) 561, 597, 681
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 4 cut(s) 563, 803, 920, 949
BmiI GGNNCC 2 cut(s) 26, 120
BmrFI CCNGG 3 cut(s) 561, 597, 681
BmsI GCATC 1 cut(s) 522
BpiI GAAGAC 2 cut(s) 36, 84
BpmI CTGGAG 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 831
Bpu14I TTCGAA 1 cut(s) 1101
BpuMI CCSGG 2 cut(s) 597, 681
BsaBI GATNNNNATC 1 cut(s) 527
BsaJI CCNNGG 1 cut(s) 559
Bsc4I CCNNNNNNNGG 3 cut(s) 335, 800, 1055
Bse1I ACTGG 3 cut(s) 111, 743, 983
Bse3DI GCAATG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 527
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 4 cut(s) 348, 513, 645, 906
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 3 cut(s) 335, 800, 1055
BseMI GCAATG 1 cut(s) 380
BseNI ACTGG 3 cut(s) 111, 743, 983
BseRI GAGGAG 1 cut(s) 37
BseSI GKGCMC 1 cut(s) 846
BseXI GCAGC 2 cut(s) 106, 277
BseYI CCCAGC 1 cut(s) 671
BshFI GGCC 4 cut(s) 564, 804, 922, 950
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 2 cut(s) 597, 681
BslFI GGGAC 4 cut(s) 467, 590, 618, 695
BslI CCNNNNNNNGG 3 cut(s) 335, 800, 1055
BsmFI GGGAC 4 cut(s) 467, 590, 618, 695
BsmI GAATGC 1 cut(s) 552
BsnI GGCC 4 cut(s) 564, 804, 922, 950
BsoBI CYCGRG 1 cut(s) 607
Bsp119I TTCGAA 1 cut(s) 1101
Bsp1286I GDGCHC 4 cut(s) 29, 614, 672, 846
Bsp143I GATC 5 cut(s) 224, 309, 338, 522, 1045
Bsp1720I GCTNAGC 1 cut(s) 831
BspACI CCGC 9 cut(s) 316, 449, 488, 677, 698, 740, 773, 785, 893
BspANI GGCC 4 cut(s) 564, 804, 922, 950
BspLI GGNNCC 2 cut(s) 26, 120
BspPI GGATC 3 cut(s) 346, 517, 1040
BspT104I TTCGAA 1 cut(s) 1101
BsrBI CCGCTC 1 cut(s) 893
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 3 cut(s) 111, 743, 983
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 5 cut(s) 224, 309, 338, 522, 1045
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 5 cut(s) 187, 362, 481, 604, 1042
Bst6I CTCTTC 1 cut(s) 255
BstBI TTCGAA 1 cut(s) 1101
BstC8I GCNNGC 2 cut(s) 677, 740
BstDEI CTNAG 3 cut(s) 284, 831, 990
BstF5I GGATG 4 cut(s) 348, 513, 645, 906
BstH2I RGCGCY 1 cut(s) 815
BstHHI GCGC 2 cut(s) 814, 902
BstKTI GATC 5 cut(s) 227, 312, 341, 525, 1048
BstMBI GATC 5 cut(s) 224, 309, 338, 522, 1045
BstMWI GCNNNNNNNGC 8 cut(s) 33, 549, 676, 781, 841, 899, 919, 962
BstNI CCWGG 1 cut(s) 561
BstSCI CCNGG 3 cut(s) 559, 595, 679
BstSLI GKGCMC 1 cut(s) 846
BstV1I GCAGC 2 cut(s) 106, 277
BstV2I GAAGAC 2 cut(s) 36, 84
BstXI CCANNNNNNTGG 1 cut(s) 917
BsuRI GGCC 4 cut(s) 564, 804, 922, 950
BtsCI GGATG 4 cut(s) 348, 513, 645, 906
Cac8I GCNNGC 2 cut(s) 677, 740
CfoI GCGC 2 cut(s) 814, 902
Cfr13I GGNCC 4 cut(s) 563, 803, 920, 949
Csp6I GTAC 2 cut(s) 600, 1061
CviAII CATG 2 cut(s) 133, 953
CviQI GTAC 2 cut(s) 600, 1061
DdeI CTNAG 3 cut(s) 284, 831, 990
DpnI GATC 5 cut(s) 226, 311, 340, 524, 1047
DpnII GATC 5 cut(s) 224, 309, 338, 522, 1045
DraI TTTAAA 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
EciI GGCGGA 2 cut(s) 438, 762
Eco24I GRGCYC 3 cut(s) 29, 614, 672
Eco88I CYCGRG 1 cut(s) 607
EcoRII CCWGG 1 cut(s) 559
EcoT38I GRGCYC 3 cut(s) 29, 614, 672
FaeI CATG 2 cut(s) 136, 956
FalI AAGNNNNNCTT 4 cut(s) 234, 266, 643, 675
FaqI GGGAC 4 cut(s) 467, 590, 618, 695
FatI CATG 2 cut(s) 132, 952
FauI CCCGC 3 cut(s) 684, 705, 747
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 95, 291, 785
FokI GGATG 4 cut(s) 335, 500, 632, 893
FriOI GRGCYC 3 cut(s) 29, 614, 672
Fsp4HI GCNGC 3 cut(s) 95, 291, 785
FspBI CTAG 3 cut(s) 144, 630, 1034
GlaI GCGC 2 cut(s) 813, 901
GluI GCNGC 3 cut(s) 95, 291, 785
GsaI CCCAGC 1 cut(s) 675
GsuI CTGGAG 1 cut(s) 128
HaeII RGCGCY 1 cut(s) 815
HaeIII GGCC 4 cut(s) 564, 804, 922, 950
HapII CCGG 2 cut(s) 597, 681
HhaI GCGC 2 cut(s) 814, 902
Hin1II CATG 2 cut(s) 136, 956
Hin6I GCGC 2 cut(s) 812, 900
HinP1I GCGC 2 cut(s) 812, 900
HinfI GANTC 5 cut(s) 100, 368, 395, 572, 790
HpaII CCGG 2 cut(s) 597, 681
HphI GGTGA 2 cut(s) 363, 495
Hpy188I TCNGA 2 cut(s) 224, 522
Hpy188III TCNNGA 4 cut(s) 607, 860, 888, 935
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 5 cut(s) 39, 211, 527, 711, 976
HpyCH4III ACNGT 5 cut(s) 187, 362, 481, 604, 1042
HpyCH4V TGCA 4 cut(s) 4, 127, 293, 428
HpyF10VI GCNNNNNNNGC 8 cut(s) 33, 549, 676, 781, 841, 899, 919, 962
HpyF3I CTNAG 3 cut(s) 284, 831, 990
Hsp92II CATG 2 cut(s) 136, 956
HspAI GCGC 2 cut(s) 812, 900
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 5 cut(s) 224, 309, 338, 522, 1045
LmnI GCTCC 3 cut(s) 24, 65, 890
Lsp1109I GCAGC 2 cut(s) 106, 277
LweI GCATC 1 cut(s) 522
MaeI CTAG 3 cut(s) 144, 630, 1034
MaeIII GTNAC 3 cut(s) 974, 1036, 1072
MalI GATC 5 cut(s) 226, 311, 340, 524, 1047
MbiI CCGCTC 1 cut(s) 893
MboI GATC 5 cut(s) 224, 309, 338, 522, 1045
MboII GAAGA 6 cut(s) 36, 89, 97, 100, 242, 696
MhlI GDGCHC 4 cut(s) 29, 614, 672, 846
MluCI AATT 4 cut(s) 158, 165, 299, 871
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 2 cut(s) 43, 376
MseI TTAA 2 cut(s) 164, 239
MspI CCGG 2 cut(s) 597, 681
MspR9I CCNGG 3 cut(s) 561, 597, 681
Mva1269I GAATGC 1 cut(s) 552
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 8 cut(s) 33, 549, 676, 781, 841, 899, 919, 962
NciI CCSGG 2 cut(s) 597, 681
NdeII GATC 5 cut(s) 224, 309, 338, 522, 1045
NlaIII CATG 2 cut(s) 136, 956
NlaIV GGNNCC 2 cut(s) 26, 120
NmeAIII GCCGAG 1 cut(s) 813
NspV TTCGAA 1 cut(s) 1101
PctI GAATGC 1 cut(s) 552
PfeI GAWTC 4 cut(s) 100, 368, 395, 572
PkrI GCNGC 3 cut(s) 96, 292, 786
PleI GAGTC 1 cut(s) 798
PpsI GAGTC 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 671
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 2 cut(s) 26, 120
PspPI GGNCC 4 cut(s) 563, 803, 920, 949
RsaI GTAC 2 cut(s) 601, 1062
RsaNI GTAC 2 cut(s) 600, 1061
SaqAI TTAA 2 cut(s) 164, 239
SatI GCNGC 3 cut(s) 95, 291, 785
Sau3AI GATC 5 cut(s) 224, 309, 338, 522, 1045
Sau96I GGNCC 4 cut(s) 563, 803, 920, 949
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 3 cut(s) 561, 597, 681
SduI GDGCHC 4 cut(s) 29, 614, 672, 846
SetI ASST 8 cut(s) 391, 406, 433, 538, 631, 661, 868, 996
SfaNI GCATC 1 cut(s) 522
SfuI TTCGAA 1 cut(s) 1101
SpeI ACTAGT 1 cut(s) 1033
Sse9I AATT 4 cut(s) 158, 165, 299, 871
SsiI CCGC 9 cut(s) 316, 449, 488, 677, 698, 740, 773, 785, 893
SspMI CTAG 3 cut(s) 144, 630, 1034
StyD4I CCNGG 3 cut(s) 559, 595, 679
TaaI ACNGT 5 cut(s) 187, 362, 481, 604, 1042
TaqI TCGA 4 cut(s) 47, 103, 666, 1101
TasI AATT 4 cut(s) 158, 165, 299, 871
TatI WGTACW 1 cut(s) 1060
TauI GCSGC 1 cut(s) 787
TfiI GAWTC 4 cut(s) 100, 368, 395, 572
Tru1I TTAA 2 cut(s) 164, 239
Tru9I TTAA 2 cut(s) 164, 239
TseI GCWGC 2 cut(s) 94, 290
TspDTI ATGAA 2 cut(s) 387, 884
TspGWI ACGGA 1 cut(s) 111
XapI RAATTY 1 cut(s) 158
XspI CTAG 3 cut(s) 144, 630, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.