Rh5AG169400

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0013638
Physical Location & Seq
Reverse (-)
18726219 .. 18727422
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG169400.1

Sequence Viewer

Length: 1029 bp
ATGGAAACAAGCAGAGAGTGCATGAGAATTTGCGTTCTTCTTCTCTATTTGACTGCAGCAACTATTTCCTTCACTCAATGTGATGCAAGAAAATCACATAGATTACTAAAGGGTCTTACAAAACCCCCTCCAACCCATCACAGAAGTCTGTTTCTCAGAACTATAAAGAAGTTGAATTTAGTAAAGCGCATTGAGTATAACCCATTTGGTTCATCAAAGCAACAAAACCAAGAACCCTATGGTTTGAATTCACCACTTTCATTGCCACCTTATGATTCACTAGCTCCACTTTCCTTGCCTGATGCAAATGCTCCTCCATTTTGTACTTACCCACCCAACACTCCACAAACCCCCTCTACAACTACTCCGACACCCACCACATCATCACCCCCAAGCCCACAATCACCTTTTCTTTACGTTCCACCAATTCTTCCCATGCAAAGCCCACCACTAGTCCCAATAGGCACTATCCCAGGCCCACCACAATCTATCTCCGTACCTGGGCCGCCGGAGTCTATACCGAGTCCGACCATCTACTTCCCAGGCCCACCGCAATCTATCCCGACCCCTAATCCACCCGAAACCGTCCCAAGCCCACCGGATTACGAGCCCAGCCCGCCATATTTTTCTATTCCAAGCCCGCCTTCTTTCGTCCCATCTCCTTCCTATGGGTTCCAACCAAGCCCACCAGTGTTCGAACCCCCTGTTGTGTTCCCTCCACCAACCACTCCGCCGAGTCCAAAGAAAGGCCCGACAACGGCCCTTTGGTGCGTGGCCAAGCCGTCGGTGCCCGACCCAATCATCCAAGAAGCCATGAACTACGCTTGCGGGTCTGGAGCAGATTGTGATGCCATTCTGCCCAATGGGTCATGCTTTGAGCCCAACACATTGTATGCCCATGCTTCGTTTGCCTTCAATAGTTACTGGCAAAGGACCAGGGTTGCTGGTAGCACCTGTTCGTTTGGAGGAACAGCCATACTAGTCACAGTTGATCCAAGTTATGATGGGTGCCGGTTTGATTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

342

Amino Acids

36.91

Weight (kDa)

6.87

Isoelectric Point (pI)

79.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 255 - 325 3.5e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 787, 1008
AciI CCGC 6 cut(s) 506, 551, 617, 641, 731, 828
AclWI GGATC 1 cut(s) 986
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 3 cut(s) 27, 175, 247
AfaI GTAC 2 cut(s) 325, 498
AfiI CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
AgsI TTSAA 3 cut(s) 175, 247, 916
AhlI ACTAGT 2 cut(s) 451, 979
AjnI CCWGG 4 cut(s) 472, 499, 541, 935
AjuI GAANNNNNNNTTGG 2 cut(s) 628, 660
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
AlwI GGATC 1 cut(s) 986
AoxI GGCC 6 cut(s) 475, 503, 544, 748, 759, 774
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 3 cut(s) 27, 175, 247
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 6 cut(s) 476, 503, 545, 749, 760, 933
AsuHPI GGTGA 3 cut(s) 243, 378, 396
AsuII TTCGAA 1 cut(s) 696
AvaII GGWCC 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 792
BalI TGGCCA 1 cut(s) 776
BanI GGYRCC 2 cut(s) 787, 1008
BanII GRGCYC 2 cut(s) 612, 882
BbvI GCAGC 1 cut(s) 68
BccI CCATC 4 cut(s) 144, 539, 664, 998
BceAI ACGGC 2 cut(s) 766, 774
BciT130I CCWGG 4 cut(s) 474, 501, 543, 937
BcuI ACTAGT 2 cut(s) 451, 979
BfaI CTAG 3 cut(s) 281, 452, 980
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 2 cut(s) 57, 506
BlsI GCNGC 2 cut(s) 58, 507
Bme1390I CCNGG 4 cut(s) 474, 501, 543, 937
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 6 cut(s) 476, 503, 545, 749, 760, 933
BmiI GGNNCC 3 cut(s) 674, 789, 1010
BmrFI CCNGG 4 cut(s) 474, 501, 543, 937
BmsI GCATC 3 cut(s) 73, 292, 838
BpmI CTGGAG 1 cut(s) 855
Bpu14I TTCGAA 1 cut(s) 696
BsaJI CCNNGG 4 cut(s) 472, 500, 541, 936
BsaWI WCCGGW 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
Bse118I RCCGGY 1 cut(s) 1011
Bse1I ACTGG 2 cut(s) 689, 929
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 4 cut(s) 474, 501, 543, 937
BseDI CCNNGG 4 cut(s) 472, 500, 541, 936
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 2 cut(s) 689, 929
BseRI GAGGAG 1 cut(s) 303
BseSI GKGCMC 1 cut(s) 792
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 611
BshFI GGCC 6 cut(s) 477, 505, 546, 750, 761, 776
BshNI GGYRCC 2 cut(s) 787, 1008
BsiSI CCGG 3 cut(s) 509, 599, 1012
BslFI GGGAC 3 cut(s) 440, 572, 638
BslI CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
BsmFI GGGAC 3 cut(s) 440, 572, 638
BsnI GGCC 6 cut(s) 477, 505, 546, 750, 761, 776
Bsp119I TTCGAA 1 cut(s) 696
Bsp1286I GDGCHC 3 cut(s) 612, 792, 882
Bsp143I GATC 1 cut(s) 991
BspACI CCGC 6 cut(s) 506, 551, 617, 641, 731, 828
BspANI GGCC 6 cut(s) 477, 505, 546, 750, 761, 776
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 674, 789, 1010
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 986
BspT104I TTCGAA 1 cut(s) 696
BspT107I GGYRCC 2 cut(s) 787, 1008
BsrDI GCAATG 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 689, 929
BssAI RCCGGY 1 cut(s) 1011
BssECI CCNNGG 4 cut(s) 472, 500, 541, 936
BssMI GATC 1 cut(s) 991
Bst2UI CCWGG 4 cut(s) 474, 501, 543, 937
Bst4CI ACNGT 2 cut(s) 586, 988
BstAPI GCANNNNNTGC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 617, 641, 826
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 801
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 1 cut(s) 994
BstMBI GATC 1 cut(s) 991
BstMWI GCNNNNNNNGC 4 cut(s) 18, 616, 787, 908
BstNI CCWGG 4 cut(s) 474, 501, 543, 937
BstSCI CCNGG 4 cut(s) 472, 499, 541, 935
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 792
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 6 cut(s) 477, 505, 546, 750, 761, 776
BtsCI GGATG 1 cut(s) 801
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 3 cut(s) 617, 641, 826
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 1011
Cfr13I GGNCC 6 cut(s) 476, 503, 545, 749, 760, 933
Csp6I GTAC 2 cut(s) 324, 497
CspCI CAANNNNNGTGG 4 cut(s) 243, 276, 278, 311
CviAII CATG 5 cut(s) 22, 436, 814, 870, 899
CviQI GTAC 2 cut(s) 324, 497
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 993
DpnII GATC 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 774
EciI GGCGGA 1 cut(s) 720
Eco24I GRGCYC 2 cut(s) 612, 882
Eco47I GGWCC 1 cut(s) 933
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 4 cut(s) 472, 499, 541, 935
EcoT38I GRGCYC 2 cut(s) 612, 882
FaeI CATG 5 cut(s) 25, 439, 817, 873, 902
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FaqI GGGAC 3 cut(s) 440, 572, 638
FatI CATG 5 cut(s) 21, 435, 813, 869, 898
FauI CCCGC 3 cut(s) 624, 648, 821
Fnu4HI GCNGC 2 cut(s) 57, 506
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 2 cut(s) 612, 882
Fsp4HI GCNGC 2 cut(s) 57, 506
FspBI CTAG 3 cut(s) 281, 452, 980
GlaI GCGC 1 cut(s) 188
GluI GCNGC 2 cut(s) 57, 506
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 6 cut(s) 477, 505, 546, 750, 761, 776
HapII CCGG 3 cut(s) 509, 599, 1012
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 25, 439, 817, 873, 902
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 4 cut(s) 275, 512, 523, 736
HpaII CCGG 3 cut(s) 509, 599, 1012
HphI GGTGA 3 cut(s) 243, 378, 396
Hpy188I TCNGA 3 cut(s) 158, 369, 528
Hpy188III TCNNGA 2 cut(s) 562, 834
Hpy99I CGWCG 1 cut(s) 787
HpyAV CCTTC 4 cut(s) 79, 654, 672, 922
HpyCH4III ACNGT 2 cut(s) 586, 988
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 5 cut(s) 21, 56, 86, 305, 439
HpyF10VI GCNNNNNNNGC 4 cut(s) 18, 616, 787, 908
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 5 cut(s) 25, 439, 817, 873, 902
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 991
LmnI GCTCC 3 cut(s) 289, 316, 836
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 3 cut(s) 73, 292, 838
MaeI CTAG 3 cut(s) 281, 452, 980
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 2 cut(s) 920, 982
MalI GATC 1 cut(s) 993
MboI GATC 1 cut(s) 991
MboII GAAGA 3 cut(s) 29, 32, 422
MhlI GDGCHC 3 cut(s) 612, 792, 882
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 4 cut(s) 27, 175, 247, 426
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 3 cut(s) 521, 532, 745
MmeI TCCRAC 4 cut(s) 155, 392, 551, 700
MnlI CCTC 5 cut(s) 138, 324, 364, 726, 959
Mox20I TGGCCA 1 cut(s) 776
MscI TGGCCA 1 cut(s) 776
Msp20I TGGCCA 1 cut(s) 776
MspI CCGG 3 cut(s) 509, 599, 1012
MspR9I CCNGG 4 cut(s) 474, 501, 543, 937
MvaI CCWGG 4 cut(s) 474, 501, 543, 937
MwoI GCNNNNNNNGC 4 cut(s) 18, 616, 787, 908
NdeII GATC 1 cut(s) 991
NlaIII CATG 5 cut(s) 25, 439, 817, 873, 902
NlaIV GGNNCC 3 cut(s) 674, 789, 1010
NmeAIII GCCGAG 1 cut(s) 759
NmuCI GTSAC 1 cut(s) 982
NspV TTCGAA 1 cut(s) 696
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 58, 507
PleI GAGTC 3 cut(s) 520, 531, 744
PpsI GAGTC 3 cut(s) 520, 531, 744
Psp6I CCWGG 4 cut(s) 472, 499, 541, 935
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 4 cut(s) 472, 499, 541, 935
PspN4I GGNNCC 3 cut(s) 674, 789, 1010
PspPI GGNCC 6 cut(s) 476, 503, 545, 749, 760, 933
PsrI GAACNNNNNNTAC 2 cut(s) 940, 972
PstI CTGCAG 1 cut(s) 58
RsaI GTAC 2 cut(s) 325, 498
RsaNI GTAC 2 cut(s) 324, 497
SatI GCNGC 2 cut(s) 57, 506
Sau3AI GATC 1 cut(s) 991
Sau96I GGNCC 6 cut(s) 476, 503, 545, 749, 760, 933
SchI GAGTC 3 cut(s) 521, 532, 745
ScrFI CCNGG 4 cut(s) 474, 501, 543, 937
SduI GDGCHC 3 cut(s) 612, 792, 882
SetI ASST 6 cut(s) 271, 286, 409, 420, 502, 956
SfaNI GCATC 3 cut(s) 73, 292, 838
SfcI CTRYAG 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 696
SinI GGWCC 1 cut(s) 933
SpeI ACTAGT 2 cut(s) 451, 979
Sse9I AATT 4 cut(s) 27, 175, 247, 426
SsiI CCGC 6 cut(s) 506, 551, 617, 641, 731, 828
SspMI CTAG 3 cut(s) 281, 452, 980
StyD4I CCNGG 4 cut(s) 472, 499, 541, 935
TaaI ACNGT 2 cut(s) 586, 988
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 696
TasI AATT 4 cut(s) 27, 175, 247, 426
TatI WGTACW 1 cut(s) 323
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 3 cut(s) 201, 249, 830
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 1 cut(s) 696
VpaK11BI GGWCC 1 cut(s) 933
XapI RAATTY 3 cut(s) 27, 175, 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 3 cut(s) 281, 452, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.