Prupe.4G129300_v2.0.a1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013638
Physical Location & Seq
Reverse (-)
7134568 .. 7136568
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G129300.1

Sequence Viewer

Length: 1032 bp
ATGGCCACAAACAAAGAGCACACTAGGATTTGCATTCTTTTTCTCTATTTGGCTCTGGCAACTATTTCCTTCTATCAATGTGAGGCAAGAAGATCAATGAGATTACTAAAAGCTGTTCCAAGTCCAGCACACCAGAGAAGTCTGTTTCTCAAAGCTGCAAAGAATTTGAAGTTAATTAAGCAAATTGATTTTCCATTGGAGGGATCAAAGGAAATCCAGCCCTATGGTGTGAGCTCACCACTTACATTGCCACCTTATGATTCATTGGCTCCAATTTCCTTGCCTGAAAATGCACCTCCTTATTGTACAACTGCACCCAATACCCCACAAACCCCTTCTACAATTTTTACCCCTACTCCATCAACACTCTATCCACCAATCCTTCCTTTTCAAAGCCCACCAGCAAGCCCAATTATCATTATCCCAGGCCCACCAGAATCTATCTCTACTCCGAATCCACCCGTAACCTTCCCAAGTCCAACAATTATTATACCAGGCCCACCCGAATCCACTCCTAATCCACCCGAAACCGTCCCAAGCCCAACTGTCATAGTCCCAAGCCCACCAGACTTTATACCTAGTCCCACTATCTATATCCCAAGCCCACCTGATTATGAGCCCAGCCCGCCGGCCCTTGTCCCAAACCCACCTTCTTCGGTGCCATCTCCTTTCGGGTTTCAGCCAAGCCCACCGGTGTTCGAGCCTCCTATTATCTTCCCCCCACCGACCACACCACCGACCCCGAAAAGAGGCCCAAAGGCGGCCCTGTGGTGCGTAGCTAAGCCGTCAGTGCCCGACCCAATCATTCAAGAAGCTATGAATTATGCTTGTGGATCGGGAGCGGATTGCGGGCCCATTCAGCCCAGTGGGCCGTGCTTTGAGCCCAACTCATTGTTTGCCCATGCTTCCTATGCCTTCAATAGCTTCTGGCAAAGGACGAAGGTTGCTGGTGGCACTTGTGAGTTTGGAGGAACTGGCATGCTAGTCACTGTCGATCCAAGCTATGATGGGTGCCACTTTGTCTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

344

Amino Acids

36.73

Weight (kDa)

5.81

Isoelectric Point (pI)

74.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 658, 1011
AccBSI CCGCTC 1 cut(s) 842
AciI CCGC 4 cut(s) 626, 761, 842, 849
AclWI GGATC 3 cut(s) 211, 841, 989
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 3 cut(s) 200, 749, 760
AgeI ACCGGT 1 cut(s) 691
AgsI TTSAA 4 cut(s) 169, 392, 809, 919
AjnI CCWGG 2 cut(s) 424, 493
AjuI GAANNNNNNNTTGG 2 cut(s) 634, 666
AluBI AGCT 7 cut(s) 113, 155, 234, 779, 815, 924, 1002
AluI AGCT 7 cut(s) 113, 155, 234, 779, 815, 924, 1002
Alw21I GWGCWC 2 cut(s) 21, 236
AlwI GGATC 3 cut(s) 211, 841, 989
AoxI GGCC 8 cut(s) 3, 427, 496, 630, 751, 762, 851, 869
ApaI GGGCCC 1 cut(s) 855
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 163
AsiGI ACCGGT 1 cut(s) 691
AspS9I GGNCC 8 cut(s) 428, 497, 631, 752, 763, 851, 852, 869
AsuHPI GGTGA 1 cut(s) 228
BaeGI GKGCMC 2 cut(s) 795, 855
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 658, 1011
BanII GRGCYC 4 cut(s) 236, 621, 855, 885
Bbv12I GWGCWC 2 cut(s) 21, 236
BbvI GCAGC 1 cut(s) 142
BccI CCATC 3 cut(s) 367, 670, 1001
BceAI ACGGC 2 cut(s) 769, 856
BciT130I CCWGG 2 cut(s) 426, 495
BfaI CTAG 3 cut(s) 24, 579, 983
BglI GCCNNNNNGGC 1 cut(s) 868
BisI GCNGC 2 cut(s) 156, 762
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 2 cut(s) 157, 763
Bme1390I CCNGG 2 cut(s) 426, 495
BmgT120I GGNCC 8 cut(s) 428, 497, 631, 752, 763, 851, 852, 869
BmiI GGNNCC 4 cut(s) 270, 660, 853, 1013
BmrFI CCNGG 2 cut(s) 426, 495
BmrI ACTGGG 1 cut(s) 858
BmuI ACTGGG 1 cut(s) 858
BplI GAGNNNNNCTC 2 cut(s) 872, 904
Bpu1102I GCTNAGC 1 cut(s) 780
BsaJI CCNNGG 1 cut(s) 424
BsaWI WCCGGW 1 cut(s) 691
BsaXI ACNNNNNCTCC 2 cut(s) 340, 370
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 749, 760
Bse118I RCCGGY 2 cut(s) 628, 691
Bse1I ACTGG 2 cut(s) 864, 979
Bse3DI GCAATG 1 cut(s) 245
BseBI CCWGG 2 cut(s) 426, 495
BseDI CCNNGG 1 cut(s) 424
BseLI CCNNNNNNNGG 3 cut(s) 200, 749, 760
BseMI GCAATG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 864, 979
BseSI GKGCMC 2 cut(s) 795, 855
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 620
BsgI GTGCAG 1 cut(s) 297
BshFI GGCC 8 cut(s) 5, 429, 498, 632, 753, 764, 853, 871
BshNI GGYRCC 2 cut(s) 658, 1011
BshTI ACCGGT 1 cut(s) 691
BsiHKAI GWGCWC 2 cut(s) 21, 236
BsiSI CCGG 2 cut(s) 629, 692
BslFI GGGAC 4 cut(s) 518, 539, 567, 623
BslI CCNNNNNNNGG 3 cut(s) 200, 749, 760
BsmFI GGGAC 4 cut(s) 518, 539, 567, 623
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 8 cut(s) 5, 429, 498, 632, 753, 764, 853, 871
Bsp120I GGGCCC 1 cut(s) 851
Bsp1286I GDGCHC 6 cut(s) 21, 236, 621, 795, 855, 885
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 4 cut(s) 92, 203, 833, 994
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 4 cut(s) 626, 761, 842, 849
BspANI GGCC 8 cut(s) 5, 429, 498, 632, 753, 764, 853, 871
BspLI GGNNCC 4 cut(s) 270, 660, 853, 1013
BspPI GGATC 3 cut(s) 211, 841, 989
BspT107I GGYRCC 2 cut(s) 658, 1011
BsrBI CCGCTC 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 245
BsrFI RCCGGY 2 cut(s) 628, 691
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 2 cut(s) 864, 979
BssAI RCCGGY 2 cut(s) 628, 691
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 4 cut(s) 92, 203, 833, 994
Bst2UI CCWGG 2 cut(s) 426, 495
Bst4CI ACNGT 3 cut(s) 532, 547, 991
BstAUI TGTACA 1 cut(s) 305
BstC8I GCNNGC 5 cut(s) 406, 626, 630, 851, 980
BstDEI CTNAG 1 cut(s) 780
BstKTI GATC 4 cut(s) 95, 206, 836, 997
BstMBI GATC 4 cut(s) 92, 203, 833, 994
BstMWI GCNNNNNNNGC 5 cut(s) 625, 790, 859, 868, 911
BstNI CCWGG 2 cut(s) 426, 495
BstNSI RCATGY 1 cut(s) 982
BstSCI CCNGG 2 cut(s) 424, 493
BstSLI GKGCMC 2 cut(s) 795, 855
BstV1I GCAGC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 8 cut(s) 5, 429, 498, 632, 753, 764, 853, 871
BtsIMutI CAGTG 3 cut(s) 795, 871, 987
Cac8I GCNNGC 5 cut(s) 406, 626, 630, 851, 980
Cfr10I RCCGGY 2 cut(s) 628, 691
Cfr13I GGNCC 8 cut(s) 428, 497, 631, 752, 763, 851, 852, 869
Csp6I GTAC 1 cut(s) 306
CspAI ACCGGT 1 cut(s) 691
CspCI CAANNNNNGTGG 2 cut(s) 228, 263
CviAII CATG 2 cut(s) 902, 979
CviQI GTAC 1 cut(s) 306
DdeI CTNAG 1 cut(s) 780
DpnI GATC 4 cut(s) 94, 205, 835, 996
DpnII GATC 4 cut(s) 92, 203, 833, 994
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 234
Eco24I GRGCYC 4 cut(s) 236, 621, 855, 885
Eco53kI GAGCTC 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 234
EcoRII CCWGG 2 cut(s) 424, 493
EcoT38I GRGCYC 4 cut(s) 236, 621, 855, 885
FaeI CATG 2 cut(s) 905, 982
FaqI GGGAC 4 cut(s) 518, 539, 567, 623
FatI CATG 2 cut(s) 901, 978
FauI CCCGC 2 cut(s) 633, 842
Fnu4HI GCNGC 2 cut(s) 156, 762
FriOI GRGCYC 4 cut(s) 236, 621, 855, 885
Fsp4HI GCNGC 2 cut(s) 156, 762
FspBI CTAG 3 cut(s) 24, 579, 983
GluI GCNGC 2 cut(s) 156, 762
GsaI CCCAGC 1 cut(s) 624
HaeIII GGCC 8 cut(s) 5, 429, 498, 632, 753, 764, 853, 871
HapII CCGG 2 cut(s) 629, 692
Hin1II CATG 2 cut(s) 905, 982
HinfI GANTC 4 cut(s) 260, 437, 454, 506
HpaII CCGG 2 cut(s) 629, 692
HphI GGTGA 1 cut(s) 228
Hpy188I TCNGA 1 cut(s) 453
Hpy188III TCNNGA 2 cut(s) 809, 837
HpyAV CCTTC 7 cut(s) 79, 345, 392, 478, 660, 925, 934
HpyCH4III ACNGT 3 cut(s) 532, 547, 991
HpyCH4V TGCA 4 cut(s) 33, 158, 293, 314
HpyF10VI GCNNNNNNNGC 5 cut(s) 625, 790, 859, 868, 911
HpyF3I CTNAG 1 cut(s) 780
Hsp92II CATG 2 cut(s) 905, 982
KroI GCCGGC 1 cut(s) 628
KroNI GCCGGC 1 cut(s) 630
Kzo9I GATC 4 cut(s) 92, 203, 833, 994
LmnI GCTCC 2 cut(s) 274, 839
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 3 cut(s) 24, 579, 983
MaeIII GTNAC 2 cut(s) 463, 985
MalI GATC 4 cut(s) 94, 205, 835, 996
MbiI CCGCTC 1 cut(s) 842
MboI GATC 4 cut(s) 92, 203, 833, 994
MboII GAAGA 3 cut(s) 102, 645, 706
MhlI GDGCHC 6 cut(s) 21, 236, 621, 795, 855, 885
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 163, 174, 183, 273, 342, 411, 483, 820
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 503
MnlI CCTC 6 cut(s) 76, 193, 306, 714, 743, 962
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 628
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 173, 177
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 629, 692
MspR9I CCNGG 2 cut(s) 426, 495
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 2 cut(s) 426, 495
MwoI GCNNNNNNNGC 5 cut(s) 625, 790, 859, 868, 911
NaeI GCCGGC 1 cut(s) 630
NdeII GATC 4 cut(s) 92, 203, 833, 994
NgoMIV GCCGGC 1 cut(s) 628
NlaIII CATG 2 cut(s) 905, 982
NlaIV GGNNCC 4 cut(s) 270, 660, 853, 1013
NmuCI GTSAC 1 cut(s) 985
NspI RCATGY 1 cut(s) 982
PacI TTAATTAA 1 cut(s) 177
PaeI GCATGC 1 cut(s) 982
PctI GAATGC 1 cut(s) 33
PdiI GCCGGC 1 cut(s) 630
PfeI GAWTC 4 cut(s) 260, 437, 454, 506
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 2 cut(s) 157, 763
Psp124BI GAGCTC 1 cut(s) 236
Psp6I CCWGG 2 cut(s) 424, 493
PspFI CCCAGC 1 cut(s) 620
PspGI CCWGG 2 cut(s) 424, 493
PspN4I GGNNCC 4 cut(s) 270, 660, 853, 1013
PspOMI GGGCCC 1 cut(s) 851
PspPI GGNCC 8 cut(s) 428, 497, 631, 752, 763, 851, 852, 869
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SacI GAGCTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 173, 177
SatI GCNGC 2 cut(s) 156, 762
Sau3AI GATC 4 cut(s) 92, 203, 833, 994
Sau96I GGNCC 8 cut(s) 428, 497, 631, 752, 763, 851, 852, 869
ScrFI CCNGG 2 cut(s) 426, 495
SduI GDGCHC 6 cut(s) 21, 236, 621, 795, 855, 885
SgrAI CRCCGGYG 1 cut(s) 691
SphI GCATGC 1 cut(s) 982
Sse9I AATT 8 cut(s) 163, 174, 183, 273, 342, 411, 483, 820
SsiI CCGC 4 cut(s) 626, 761, 842, 849
SspMI CTAG 3 cut(s) 24, 579, 983
SstI GAGCTC 1 cut(s) 236
StyD4I CCNGG 2 cut(s) 424, 493
TaaI ACNGT 3 cut(s) 532, 547, 991
TaqI TCGA 2 cut(s) 699, 993
TasI AATT 8 cut(s) 163, 174, 183, 273, 342, 411, 483, 820
TatI WGTACW 1 cut(s) 305
TauI GCSGC 1 cut(s) 764
TfiI GAWTC 4 cut(s) 260, 437, 454, 506
Tru1I TTAA 2 cut(s) 173, 177
Tru9I TTAA 2 cut(s) 173, 177
TscAI CASTG 3 cut(s) 795, 871, 994
TseFI GTSAC 1 cut(s) 985
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 985
TspDTI ATGAA 2 cut(s) 252, 833
TspRI CASTG 3 cut(s) 795, 871, 994
XapI RAATTY 1 cut(s) 163
XceI RCATGY 1 cut(s) 982
XspI CTAG 3 cut(s) 24, 579, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.