Rh5BG166800

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013638
Physical Location & Seq
Reverse (-)
17541680 .. 17543413
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG166800.1

Sequence Viewer

Length: 1056 bp
ATGGAAACAAGCAGAGAGTGCATGAGAATTTGCATTCTTCTTCTCTATTTGACTGCAGCAACTATTTCCTTCACTCAATGTGATGCAAGAAAATCACATAGATTACTAAAGGGTCTTACAAAACCCCCTCCAACCCATCACAGAAGTCTGTTTCTCAGAACTGCAAAGAAGTTGAATTTAGTAAAGCGCATTGAGTATAACCCATTTGGTTCATCAAAGCAACAAAACCAAGAACCCTATGGTTTGAATTCACCACTTTCATTGCCACCTTATGATTCACTAGCTCCACTTTCCTTGCCTGATCCAAATGCTCCTTCATTTTGTACTTACCCACCCAACACTCCACAAACCCCCTCTACAACTACTCCAACACCCACCACATCATCACCCCCAAGCCCACAATCACCTTATCTTTACGTTCCACCAATTCTTCCCATGCAAAGCCCACCACCAGTCCCAATAGGCACTATCCCAGGCCCACCGCAATCTATCTCCGCCCCTATCCCCCCAACATCCGGAACCGTGCCTGGGTCGCCGGAGTCTATACCGAGTCCGACCATCTACTTCCCAGGCCCACCGCAATCTATCCCGACCCCTAATCCACCCGAAACAGTCCCAAGCCCACCGGATTACGAGCCCAGCCCGCCAGATTTTTCTATTCCAAGCCCACCTTCTTTCGTCCCATCTCCTCCCTATGGGTTCCAACCAAGCCCACCAGTGTTCGAACCCCCTGTTGTGTTCCCTCCACCAACCACTCCGCCAAGTCCAAAGAAAGGCCCGACAACGGCCCTTTGGTGCGTGGCCAAGCCGTCGGTGCCCGACCCAATCATCCAAGAAGCCATGAACTACGCTTGCGGGTCCGGAGCAAATTGTGATGCCATTCTGCCCAATGGGTCATGCTTTGAGCCCAACACATTGTTTGCCCATGCTTCGTTTGCCTTCAATAGTTACTGGCAAAGGACCAGGGTTGCTGGTGGCACCTGTTCGTTTGGAGGAACAGCCATACTAGTCACAGCTGATCCAAGTTACGATGGGTGCCGGTTTGACTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

351

Amino Acids

37.59

Weight (kDa)

6.87

Isoelectric Point (pI)

79.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 264 - 334 3.2e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 814, 977, 1035
AccIII TCCGGA 2 cut(s) 515, 860
AciI CCGC 6 cut(s) 482, 495, 578, 644, 758, 855
AclWI GGATC 2 cut(s) 296, 1013
AcoI YGGCCR 1 cut(s) 801
AcsI RAATTY 3 cut(s) 27, 175, 247
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 5 cut(s) 515, 528, 695, 773, 784
AgsI TTSAA 3 cut(s) 175, 247, 943
AhlI ACTAGT 1 cut(s) 1006
AjnI CCWGG 4 cut(s) 472, 526, 568, 962
AjuI GAANNNNNNNTTGG 4 cut(s) 298, 330, 655, 687
AluBI AGCT 2 cut(s) 284, 1016
AluI AGCT 2 cut(s) 284, 1016
AlwI GGATC 2 cut(s) 296, 1013
Aor13HI TCCGGA 2 cut(s) 515, 860
AoxI GGCC 5 cut(s) 475, 571, 775, 786, 801
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 3 cut(s) 27, 175, 247
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 6 cut(s) 476, 572, 776, 787, 858, 960
AsuHPI GGTGA 3 cut(s) 243, 378, 396
AsuII TTCGAA 1 cut(s) 723
AvaII GGWCC 2 cut(s) 858, 960
BaeGI GKGCMC 1 cut(s) 819
BalI TGGCCA 1 cut(s) 803
BanI GGYRCC 3 cut(s) 814, 977, 1035
BanII GRGCYC 2 cut(s) 639, 909
BbvI GCAGC 1 cut(s) 68
BccI CCATC 4 cut(s) 144, 566, 691, 1025
BceAI ACGGC 2 cut(s) 793, 801
BciT130I CCWGG 4 cut(s) 474, 528, 570, 964
BcuI ACTAGT 1 cut(s) 1006
BfaI CTAG 2 cut(s) 281, 1007
BfmI CTRYAG 1 cut(s) 54
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 4 cut(s) 474, 528, 570, 964
Bme18I GGWCC 2 cut(s) 858, 960
BmgT120I GGNCC 6 cut(s) 476, 572, 776, 787, 858, 960
BmiI GGNNCC 6 cut(s) 520, 701, 816, 859, 979, 1037
BmrFI CCNGG 4 cut(s) 474, 528, 570, 964
BmsI GCATC 2 cut(s) 73, 865
Bpu14I TTCGAA 1 cut(s) 723
BsaJI CCNNGG 4 cut(s) 472, 527, 568, 963
BsaWI WCCGGW 3 cut(s) 515, 625, 860
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 5 cut(s) 515, 528, 695, 773, 784
Bse118I RCCGGY 1 cut(s) 1038
Bse1I ACTGG 3 cut(s) 452, 716, 956
Bse3DI GCAATG 1 cut(s) 260
BseAI TCCGGA 2 cut(s) 515, 860
BseBI CCWGG 4 cut(s) 474, 528, 570, 964
BseDI CCNNGG 4 cut(s) 472, 527, 568, 963
BseGI GGATG 2 cut(s) 512, 828
BseLI CCNNNNNNNGG 5 cut(s) 515, 528, 695, 773, 784
BseMI GCAATG 1 cut(s) 260
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 3 cut(s) 452, 716, 956
BseRI GAGGAG 1 cut(s) 678
BseSI GKGCMC 1 cut(s) 819
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 638
BshFI GGCC 5 cut(s) 477, 573, 777, 788, 803
BshNI GGYRCC 3 cut(s) 814, 977, 1035
BsiSI CCGG 5 cut(s) 516, 536, 626, 861, 1039
BslFI GGGAC 3 cut(s) 440, 599, 665
BslI CCNNNNNNNGG 5 cut(s) 515, 528, 695, 773, 784
BsmFI GGGAC 3 cut(s) 440, 599, 665
BsmI GAATGC 1 cut(s) 33
BsnI GGCC 5 cut(s) 477, 573, 777, 788, 803
Bsp119I TTCGAA 1 cut(s) 723
Bsp1286I GDGCHC 3 cut(s) 639, 819, 909
Bsp13I TCCGGA 2 cut(s) 515, 860
Bsp143I GATC 2 cut(s) 301, 1018
BspACI CCGC 6 cut(s) 482, 495, 578, 644, 758, 855
BspANI GGCC 5 cut(s) 477, 573, 777, 788, 803
BspCNI CTCAG 1 cut(s) 168
BspEI TCCGGA 2 cut(s) 515, 860
BspLI GGNNCC 6 cut(s) 520, 701, 816, 859, 979, 1037
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 2 cut(s) 296, 1013
BspT104I TTCGAA 1 cut(s) 723
BspT107I GGYRCC 3 cut(s) 814, 977, 1035
BsrDI GCAATG 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 1038
BsrI ACTGG 3 cut(s) 452, 716, 956
BssAI RCCGGY 1 cut(s) 1038
BssECI CCNNGG 4 cut(s) 472, 527, 568, 963
BssMI GATC 2 cut(s) 301, 1018
Bst2UI CCWGG 4 cut(s) 474, 528, 570, 964
Bst4CI ACNGT 2 cut(s) 523, 613
BstAPI GCANNNNNTGC 1 cut(s) 18
BstBI TTCGAA 1 cut(s) 723
BstC8I GCNNGC 2 cut(s) 644, 853
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 2 cut(s) 512, 828
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 304, 1021
BstMBI GATC 2 cut(s) 301, 1018
BstMWI GCNNNNNNNGC 5 cut(s) 18, 532, 643, 814, 935
BstNI CCWGG 4 cut(s) 474, 528, 570, 964
BstSCI CCNGG 4 cut(s) 472, 526, 568, 962
BstSFI CTRYAG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 819
BstV1I GCAGC 1 cut(s) 68
BsuRI GGCC 5 cut(s) 477, 573, 777, 788, 803
BtsCI GGATG 2 cut(s) 512, 828
BtsIMutI CAGTG 1 cut(s) 723
Cac8I GCNNGC 2 cut(s) 644, 853
CfoI GCGC 1 cut(s) 189
Cfr10I RCCGGY 1 cut(s) 1038
Cfr13I GGNCC 6 cut(s) 476, 572, 776, 787, 858, 960
Csp6I GTAC 1 cut(s) 324
CspCI CAANNNNNGTGG 4 cut(s) 243, 276, 278, 311
CviAII CATG 5 cut(s) 22, 436, 841, 897, 926
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 155
DpnI GATC 2 cut(s) 303, 1020
DpnII GATC 2 cut(s) 301, 1018
EaeI YGGCCR 1 cut(s) 801
EciI GGCGGA 2 cut(s) 484, 747
Eco24I GRGCYC 2 cut(s) 639, 909
Eco47I GGWCC 2 cut(s) 858, 960
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 4 cut(s) 472, 526, 568, 962
EcoT38I GRGCYC 2 cut(s) 639, 909
FaeI CATG 5 cut(s) 25, 439, 844, 900, 929
FalI AAGNNNNNCTT 2 cut(s) 655, 687
FaqI GGGAC 3 cut(s) 440, 599, 665
FatI CATG 5 cut(s) 21, 435, 840, 896, 925
FauI CCCGC 2 cut(s) 651, 848
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 499, 815
FriOI GRGCYC 2 cut(s) 639, 909
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 281, 1007
GlaI GCGC 1 cut(s) 188
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 642
HaeIII GGCC 5 cut(s) 477, 573, 777, 788, 803
HapII CCGG 5 cut(s) 516, 536, 626, 861, 1039
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 25, 439, 844, 900, 929
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 3 cut(s) 275, 539, 550
HpaII CCGG 5 cut(s) 516, 536, 626, 861, 1039
HphI GGTGA 3 cut(s) 243, 378, 396
Hpy188I TCNGA 2 cut(s) 158, 555
Hpy188III TCNNGA 3 cut(s) 516, 589, 861
Hpy99I CGWCG 1 cut(s) 814
HpyAV CCTTC 4 cut(s) 79, 324, 681, 949
HpyCH4III ACNGT 2 cut(s) 523, 613
HpyCH4IV ACGT 1 cut(s) 417
HpyCH4V TGCA 6 cut(s) 21, 33, 56, 86, 164, 439
HpyF10VI GCNNNNNNNGC 5 cut(s) 18, 532, 643, 814, 935
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 417
Hsp92II CATG 5 cut(s) 25, 439, 844, 900, 929
HspAI GCGC 1 cut(s) 187
Kpn2I TCCGGA 2 cut(s) 515, 860
Kzo9I GATC 2 cut(s) 301, 1018
LmnI GCTCC 3 cut(s) 289, 316, 863
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 73, 865
MaeI CTAG 2 cut(s) 281, 1007
MaeII ACGT 1 cut(s) 417
MaeIII GTNAC 3 cut(s) 947, 1009, 1025
MalI GATC 2 cut(s) 303, 1020
MboI GATC 2 cut(s) 301, 1018
MboII GAAGA 3 cut(s) 29, 32, 422
MhlI GDGCHC 3 cut(s) 639, 819, 909
MlsI TGGCCA 1 cut(s) 803
MluCI AATT 5 cut(s) 27, 175, 247, 426, 868
MluNI TGGCCA 1 cut(s) 803
MlyI GAGTC 2 cut(s) 548, 559
MmeI TCCRAC 4 cut(s) 155, 392, 578, 727
MnlI CCTC 5 cut(s) 138, 364, 699, 753, 986
Mox20I TGGCCA 1 cut(s) 803
MroI TCCGGA 2 cut(s) 515, 860
MscI TGGCCA 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 803
MspA1I CMGCKG 1 cut(s) 1016
MspI CCGG 5 cut(s) 516, 536, 626, 861, 1039
MspR9I CCNGG 4 cut(s) 474, 528, 570, 964
Mva1269I GAATGC 1 cut(s) 33
MvaI CCWGG 4 cut(s) 474, 528, 570, 964
MwoI GCNNNNNNNGC 5 cut(s) 18, 532, 643, 814, 935
NdeII GATC 2 cut(s) 301, 1018
NlaIII CATG 5 cut(s) 25, 439, 844, 900, 929
NlaIV GGNNCC 6 cut(s) 520, 701, 816, 859, 979, 1037
NmuCI GTSAC 1 cut(s) 1009
NspV TTCGAA 1 cut(s) 723
PctI GAATGC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 2 cut(s) 547, 558
PpsI GAGTC 2 cut(s) 547, 558
Psp6I CCWGG 4 cut(s) 472, 526, 568, 962
PspFI CCCAGC 1 cut(s) 638
PspGI CCWGG 4 cut(s) 472, 526, 568, 962
PspN4I GGNNCC 6 cut(s) 520, 701, 816, 859, 979, 1037
PspPI GGNCC 6 cut(s) 476, 572, 776, 787, 858, 960
PstI CTGCAG 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 1016
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 2 cut(s) 301, 1018
Sau96I GGNCC 6 cut(s) 476, 572, 776, 787, 858, 960
SchI GAGTC 2 cut(s) 548, 559
ScrFI CCNGG 4 cut(s) 474, 528, 570, 964
SduI GDGCHC 3 cut(s) 639, 819, 909
SetI ASST 7 cut(s) 271, 286, 409, 420, 673, 983, 1018
SfaNI GCATC 2 cut(s) 73, 865
SfcI CTRYAG 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 723
SinI GGWCC 2 cut(s) 858, 960
SpeI ACTAGT 1 cut(s) 1006
Sse9I AATT 5 cut(s) 27, 175, 247, 426, 868
SsiI CCGC 6 cut(s) 482, 495, 578, 644, 758, 855
SspMI CTAG 2 cut(s) 281, 1007
StyD4I CCNGG 4 cut(s) 472, 526, 568, 962
TaaI ACNGT 2 cut(s) 523, 613
TaiI ACGT 1 cut(s) 420
TaqI TCGA 1 cut(s) 723
TasI AATT 5 cut(s) 27, 175, 247, 426, 868
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 1 cut(s) 275
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 1 cut(s) 1009
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 1009
TspDTI ATGAA 4 cut(s) 201, 249, 306, 857
TspRI CASTG 1 cut(s) 723
VpaK11BI GGWCC 2 cut(s) 858, 960
XapI RAATTY 3 cut(s) 27, 175, 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 2 cut(s) 281, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.