MD05G1236800.v1.1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013638
Physical Location & Seq
Forward (+)
36795590 .. 36796950
1361 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1236800.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGAAACGACTAGAAATCACACAAGATTTTTCATTCCTTTTCTCTATCTGACTCTAGTTGCAACTGTTTCCTTCACTCAATGTGAGGCAATCAGATCAATAAGATTTTTAAAAGGCACTCTTCCAGGTCCAACAAAGCACAGCAACTTGTTTCTTAGTGCTGCAAACAAATTGAACTTGATCAACCGCATTAACTTTCCATTGGAGGGATCAAAGGACATCCAACCCTACGGTGTGGATTCACCATTCACATTGCCACCTTACGATTCATTACCTCCAATTTCCTTGCCTGAAAACACACCTCCATACTATACAACTCCGCCCAATACCCCAGAAACTCCCCCTACAACTGTCCCAACACCTTTTGTGTTATCACCACCAAGTATCCTTCCTATCCAAATCCCACCTCCAAGCCCAACAAGCATTCTCCCAGGCCCACCAGAATCCATCTCCACCCCTAATCTGCCCGGTACTGTCCCGAGCCCGACGGGGTTTGTACCTACTCCCACTATCTACATCCCAAGCCCACCTTACTTCGAGCCCAGCCCGCCTAGTCTTGTTCCAAACCCGCCTTCTTTTGGGTTTCAACCAAGCCCGCCTGTTTTCCTACCTCCCATTGTGTTCCCTCCGCCCACTATGCTGCCGAGTCCAAGACGAGGCCCGACAGCGCCTTTGTGGTGCGTGGCAAAGCCGTCTGTGCCCGACCCCATCATTCAAGAAGCTATGAATTATGCTTGTGGGTCGGGAGCGGATTGCGCTTCCATCCAGCCCAATGGGCCGTGTTTCAATCCAGATTCATTGTTGGCCCATGCCTCCTACGCCTTCAATAGTTACTGGCAAAGGACTAGGGTTGCTGGTGGCACTTGTTCATTTGGAGGAACTGCCATACTAGTTACTATTGATCCAAGTTACGATGGATGTCGGTTTGACTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

313

Amino Acids

33.68

Weight (kDa)

5.89

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 225 - 295 2.7e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 749
AciI CCGC 7 cut(s) 187, 320, 548, 569, 596, 629, 749
AclWI GGATC 2 cut(s) 217, 896
AfaI GTAC 2 cut(s) 472, 498
AfiI CCNNNNNNNGG 3 cut(s) 206, 578, 656
AgsI TTSAA 5 cut(s) 175, 587, 716, 787, 826
AhlI ACTAGT 1 cut(s) 889
AjnI CCWGG 2 cut(s) 124, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 556, 588
AluBI AGCT 1 cut(s) 722
AluI AGCT 1 cut(s) 722
AlwI GGATC 2 cut(s) 217, 896
Ama87I CYCGRG 1 cut(s) 478
AoxI GGCC 4 cut(s) 433, 658, 776, 804
ApeKI GCWGC 2 cut(s) 161, 640
ArsI GACNNNNNNTTYG 2 cut(s) 655, 687
AspLEI GCGC 2 cut(s) 670, 758
AspS9I GGNCC 5 cut(s) 128, 434, 659, 776, 805
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 234, 366
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 702
BanII GRGCYC 2 cut(s) 485, 543
BbvI GCAGC 2 cut(s) 148, 627
BccI CCATC 4 cut(s) 455, 716, 770, 908
BceAI ACGGC 2 cut(s) 676, 763
BciT130I CCWGG 2 cut(s) 126, 432
BciVI GTATCC 1 cut(s) 395
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 468
BcuI ACTAGT 1 cut(s) 889
BfaI CTAG 5 cut(s) 12, 56, 552, 846, 890
BfoI RGCGCY 1 cut(s) 671
BfuI GTATCC 1 cut(s) 395
BglI GCCNNNNNGGC 1 cut(s) 775
BisI GCNGC 2 cut(s) 162, 641
BlsI GCNGC 2 cut(s) 163, 642
Bme1390I CCNGG 3 cut(s) 126, 432, 468
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 5 cut(s) 128, 434, 659, 776, 805
BmrFI CCNGG 3 cut(s) 126, 432, 468
BpuMI CCSGG 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 430
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 578, 656
Bse1I ACTGG 1 cut(s) 839
Bse3DI GCAATG 1 cut(s) 251
BseBI CCWGG 2 cut(s) 126, 432
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 4 cut(s) 219, 516, 762, 923
BseLI CCNNNNNNNGG 3 cut(s) 206, 578, 656
BseMI GCAATG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 839
BseSI GKGCMC 1 cut(s) 702
BseXI GCAGC 2 cut(s) 148, 627
BseYI CCCAGC 1 cut(s) 542
BshFI GGCC 4 cut(s) 435, 660, 778, 806
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 338, 461
BslI CCNNNNNNNGG 3 cut(s) 206, 578, 656
BsmFI GGGAC 2 cut(s) 338, 461
BsmI GAATGC 1 cut(s) 423
BsnI GGCC 4 cut(s) 435, 660, 778, 806
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 3 cut(s) 485, 543, 702
Bsp143I GATC 4 cut(s) 95, 180, 209, 901
BspACI CCGC 7 cut(s) 187, 320, 548, 569, 596, 629, 749
BspANI GGCC 4 cut(s) 435, 660, 778, 806
BspPI GGATC 2 cut(s) 217, 896
BsrBI CCGCTC 1 cut(s) 749
BsrDI GCAATG 1 cut(s) 251
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 4 cut(s) 95, 180, 209, 901
Bst2UI CCWGG 2 cut(s) 126, 432
Bst4CI ACNGT 4 cut(s) 67, 233, 352, 475
Bst6I CTCTTC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 548, 596
BstDEI CTNAG 1 cut(s) 155
BstF5I GGATG 4 cut(s) 219, 516, 762, 923
BstH2I RGCGCY 1 cut(s) 671
BstHHI GCGC 2 cut(s) 670, 758
BstKTI GATC 4 cut(s) 98, 183, 212, 904
BstMBI GATC 4 cut(s) 95, 180, 209, 901
BstMWI GCNNNNNNNGC 7 cut(s) 420, 547, 637, 697, 755, 775, 818
BstNI CCWGG 2 cut(s) 126, 432
BstSCI CCNGG 3 cut(s) 124, 430, 466
BstSLI GKGCMC 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 148, 627
BstXI CCANNNNNNTGG 1 cut(s) 773
BsuI GTATCC 1 cut(s) 395
BsuRI GGCC 4 cut(s) 435, 660, 778, 806
BtsCI GGATG 4 cut(s) 219, 516, 762, 923
Cac8I GCNNGC 2 cut(s) 548, 596
CfoI GCGC 2 cut(s) 670, 758
Cfr13I GGNCC 5 cut(s) 128, 434, 659, 776, 805
Csp6I GTAC 2 cut(s) 471, 497
CviAII CATG 1 cut(s) 809
CviQI GTAC 2 cut(s) 471, 497
DdeI CTNAG 1 cut(s) 155
DpnI GATC 4 cut(s) 97, 182, 211, 903
DpnII GATC 4 cut(s) 95, 180, 209, 901
DraI TTTAAA 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
EciI GGCGGA 2 cut(s) 309, 618
Eco24I GRGCYC 2 cut(s) 485, 543
Eco47I GGWCC 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 478
EcoRII CCWGG 2 cut(s) 124, 430
EcoT38I GRGCYC 2 cut(s) 485, 543
FaeI CATG 1 cut(s) 812
FaiI YATR 7 cut(s) 307, 312, 638, 725, 732, 810, 887
FalI AAGNNNNNCTT 4 cut(s) 105, 137, 514, 546
FaqI GGGAC 2 cut(s) 338, 461
FatI CATG 1 cut(s) 808
FauI CCCGC 3 cut(s) 555, 576, 603
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 162, 641
FokI GGATG 4 cut(s) 206, 503, 749, 930
FriOI GRGCYC 2 cut(s) 485, 543
Fsp4HI GCNGC 2 cut(s) 162, 641
FspBI CTAG 5 cut(s) 12, 56, 552, 846, 890
GlaI GCGC 2 cut(s) 669, 757
GluI GCNGC 2 cut(s) 162, 641
GsaI CCCAGC 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 671
HaeIII GGCC 4 cut(s) 435, 660, 778, 806
HapII CCGG 1 cut(s) 468
HhaI GCGC 2 cut(s) 670, 758
Hin1II CATG 1 cut(s) 812
Hin6I GCGC 2 cut(s) 668, 756
HinP1I GCGC 2 cut(s) 668, 756
HinfI GANTC 6 cut(s) 52, 239, 266, 443, 646, 794
HpaII CCGG 1 cut(s) 468
HphI GGTGA 2 cut(s) 234, 366
Hpy188I TCNGA 2 cut(s) 51, 95
Hpy188III TCNNGA 4 cut(s) 478, 716, 744, 791
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 4 cut(s) 82, 398, 582, 832
HpyCH4III ACNGT 4 cut(s) 67, 233, 352, 475
HpyCH4V TGCA 2 cut(s) 62, 164
HpyF10VI GCNNNNNNNGC 7 cut(s) 420, 547, 637, 697, 755, 775, 818
HpyF3I CTNAG 1 cut(s) 155
Hsp92II CATG 1 cut(s) 812
HspAI GCGC 2 cut(s) 668, 756
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 95, 180, 209, 901
LmnI GCTCC 1 cut(s) 746
Lsp1109I GCAGC 2 cut(s) 148, 627
MaeI CTAG 5 cut(s) 12, 56, 552, 846, 890
MaeIII GTNAC 3 cut(s) 830, 892, 908
MalI GATC 4 cut(s) 97, 182, 211, 903
MbiI CCGCTC 1 cut(s) 749
MboI GATC 4 cut(s) 95, 180, 209, 901
MboII GAAGA 1 cut(s) 113
MhlI GDGCHC 3 cut(s) 485, 543, 702
MluCI AATT 3 cut(s) 170, 279, 727
MlyI GAGTC 2 cut(s) 46, 655
MmeI TCCRAC 2 cut(s) 155, 247
MseI TTAA 2 cut(s) 110, 192
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 3 cut(s) 126, 432, 468
Mva1269I GAATGC 1 cut(s) 423
MvaI CCWGG 2 cut(s) 126, 432
MwoI GCNNNNNNNGC 7 cut(s) 420, 547, 637, 697, 755, 775, 818
NciI CCSGG 1 cut(s) 468
NdeII GATC 4 cut(s) 95, 180, 209, 901
NlaIII CATG 1 cut(s) 812
NmeAIII GCCGAG 1 cut(s) 669
PctI GAATGC 1 cut(s) 423
PfeI GAWTC 4 cut(s) 239, 266, 443, 794
PkrI GCNGC 2 cut(s) 163, 642
PleI GAGTC 2 cut(s) 46, 654
PpsI GAGTC 2 cut(s) 46, 654
Psp6I CCWGG 2 cut(s) 124, 430
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 2 cut(s) 124, 430
PspPI GGNCC 5 cut(s) 128, 434, 659, 776, 805
RsaI GTAC 2 cut(s) 472, 498
RsaNI GTAC 2 cut(s) 471, 497
SaqAI TTAA 2 cut(s) 110, 192
SatI GCNGC 2 cut(s) 162, 641
Sau3AI GATC 4 cut(s) 95, 180, 209, 901
Sau96I GGNCC 5 cut(s) 128, 434, 659, 776, 805
SchI GAGTC 2 cut(s) 46, 655
ScrFI CCNGG 3 cut(s) 126, 432, 468
SduI GDGCHC 3 cut(s) 485, 543, 702
SinI GGWCC 1 cut(s) 128
SpeI ACTAGT 1 cut(s) 889
Sse9I AATT 3 cut(s) 170, 279, 727
SsiI CCGC 7 cut(s) 187, 320, 548, 569, 596, 629, 749
SspMI CTAG 5 cut(s) 12, 56, 552, 846, 890
StyD4I CCNGG 3 cut(s) 124, 430, 466
TaaI ACNGT 4 cut(s) 67, 233, 352, 475
TaqI TCGA 1 cut(s) 537
TasI AATT 3 cut(s) 170, 279, 727
TfiI GAWTC 4 cut(s) 239, 266, 443, 794
Tru1I TTAA 2 cut(s) 110, 192
Tru9I TTAA 2 cut(s) 110, 192
TseI GCWGC 2 cut(s) 161, 640
TspDTI ATGAA 5 cut(s) 22, 258, 740, 786, 858
VpaK11BI GGWCC 1 cut(s) 128
XspI CTAG 5 cut(s) 12, 56, 552, 846, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.