MD10G1213700.v1.1

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013638
Physical Location & Seq
Forward (+)
31221683 .. 31223379
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1213700.v1.1.491

Sequence Viewer

Length: 1092 bp
ATGGAAACAAGTAGAAATAACACAAGAGTTTGCATTGTTTTTCTGTATTTAACTTTGGCAACTATTTCCTTCACTCAATGTGAGGCAAGAAGATCAATGAGATTGCTAAAAGATAGTCTTCCAAGTCCAACACAGCACCAAAGTCTGTTTCTCAAAGCTGCAAACAAATTGAACTTAATCAACCGCCTTGATTTTCCATTGGAGGGATCAAAGGACATCCAACCATATGATGTGGATTCACCATTTACATTGCCACCTTATGATTCTTTACCTCCAATTTCCATGCCTGAAAATGCACCTCCATATTGTACAACTCCACCCAATACCCCACAAACTCCCTCTACAACTGCCCCAACACCTATTGTGTTATCACCACCAACTCCCTCATCACCCTTCGTTTACGTTCCCCCAACCCTTCCTCTCCAAAGTCCACCTCCAAGCCCAACAAGCATTGTCCCAGGTTCACCACAATCTATCTCCACCCCTAATCCACCGGAAACCTTCCCAAGCCCAACGGGCTTTGTACCCGGCACACCACAATCCATCCCCACTCCCAACCCGCCCGAAAGCGTCCCAAGCCCGCCTGAAAGCTTTCCAAGCCCGCCGGAAAGCGTCCCAAACCCACCGGGCTTTATACCTAGTCCCGCTATCTACATCCCAAGCCCACCTTATTTCGAGCCTAGCCCGCCCGGTCTTGTTCCAAGTCCGCCTTCTTCGGTACCATCTCCTATTGGGTTTCAACCAAGCCCGCCGGTGTTCCTACCTCCCATTGTGTTCCCTCCGCCCACTACACCGCCGAGTCCAAGACGAGGCCCGACGGCGGCCCTGTGGTGCGTGGCTAAGCCATCTGTGCCCGACCCCATCATCCAAGAAGCTATGAATTATGCGTGTGGGTCTGGAGCTGATTGCGCTTCCATCCAACCCAATGGGTCATGCTTCATGCCCGACACATTGTTTGCCCATGCTTCCTATGCCTTCAATAGTTACTGGCAAAGGACTAAGGTTGCTGGTGGCACTTGTTCTTTTGGAGGAACTGCAATGCTAGTTACTGTTGATCCAAGTTATGATGGGTGTCGATTTGTTTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

364

Amino Acids

38.69

Weight (kDa)

5.02

Isoelectric Point (pI)

86.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 276 - 347 2.6e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 718
AccB1I GGYRCC 1 cut(s) 718
AclWI GGATC 2 cut(s) 214, 1049
AfaI GTAC 3 cut(s) 310, 525, 720
AfiI CCNNNNNNNGG 3 cut(s) 203, 809, 820
AgsI TTSAA 3 cut(s) 172, 740, 979
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 4 cut(s) 132, 164, 694, 726
AluBI AGCT 4 cut(s) 158, 591, 875, 902
AluI AGCT 4 cut(s) 158, 591, 875, 902
AlwI GGATC 2 cut(s) 214, 1049
AoxI GGCC 2 cut(s) 811, 822
ApeKI GCWGC 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
Asp700I GAANNNNTTC 1 cut(s) 591
Asp718I GGTACC 1 cut(s) 718
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 2 cut(s) 812, 823
AsuC2I CCSGG 3 cut(s) 528, 627, 690
AsuHPI GGTGA 4 cut(s) 231, 363, 381, 456
BaeGI GKGCMC 1 cut(s) 855
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 145
BccI CCATC 6 cut(s) 551, 730, 853, 869, 923, 1061
BceAI ACGGC 1 cut(s) 834
BciT130I CCWGG 1 cut(s) 459
BcnI CCSGG 3 cut(s) 528, 627, 690
BfaI CTAG 3 cut(s) 639, 681, 1043
BglI GCCNNNNNGGC 1 cut(s) 516
BisI GCNGC 2 cut(s) 159, 822
BlpI GCTNAGC 1 cut(s) 840
BlsI GCNGC 2 cut(s) 160, 823
Bme1390I CCNGG 4 cut(s) 459, 528, 627, 690
BmgT120I GGNCC 2 cut(s) 812, 823
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 4 cut(s) 459, 528, 627, 690
BpiI GAAGAC 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 918
Bpu1102I GCTNAGC 1 cut(s) 840
BpuMI CCSGG 3 cut(s) 528, 627, 690
BsaJI CCNNGG 1 cut(s) 457
BsaWI WCCGGW 1 cut(s) 493
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 809, 820
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 1 cut(s) 992
Bse3DI GCAATG 2 cut(s) 248, 1044
BseBI CCWGG 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 5 cut(s) 216, 543, 654, 864, 915
BseLI CCNNNNNNNGG 3 cut(s) 203, 809, 820
BseMI GCAATG 2 cut(s) 248, 1044
BseNI ACTGG 1 cut(s) 992
BseSI GKGCMC 1 cut(s) 855
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 2 cut(s) 813, 824
BshNI GGYRCC 1 cut(s) 718
BsiSI CCGG 6 cut(s) 494, 528, 605, 626, 690, 752
BslFI GGGAC 4 cut(s) 440, 557, 599, 627
BslI CCNNNNNNNGG 3 cut(s) 203, 809, 820
BsmFI GGGAC 4 cut(s) 440, 557, 599, 627
BsnI GGCC 2 cut(s) 813, 824
Bsp1286I GDGCHC 1 cut(s) 855
Bsp1407I TGTACA 1 cut(s) 308
Bsp143I GATC 3 cut(s) 92, 206, 1054
Bsp1720I GCTNAGC 1 cut(s) 840
BspANI GGCC 2 cut(s) 813, 824
BspLI GGNNCC 1 cut(s) 720
BspPI GGATC 2 cut(s) 214, 1049
BspT107I GGYRCC 1 cut(s) 718
BsrDI GCAATG 2 cut(s) 248, 1044
BsrFI RCCGGY 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 308
BsrI ACTGG 1 cut(s) 992
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 3 cut(s) 92, 206, 1054
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 1051
BstAUI TGTACA 1 cut(s) 308
BstC8I GCNNGC 4 cut(s) 581, 602, 686, 749
BstDEI CTNAG 2 cut(s) 840, 999
BstF5I GGATG 5 cut(s) 216, 543, 654, 864, 915
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 3 cut(s) 95, 209, 1057
BstMBI GATC 3 cut(s) 92, 206, 1054
BstMWI GCNNNNNNNGC 8 cut(s) 447, 516, 576, 597, 685, 850, 908, 971
BstNI CCWGG 1 cut(s) 459
BstSCI CCNGG 4 cut(s) 457, 526, 625, 688
BstSLI GKGCMC 1 cut(s) 855
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 110
BstXI CCANNNNNNTGG 1 cut(s) 926
BsuRI GGCC 2 cut(s) 813, 824
BtsCI GGATG 5 cut(s) 216, 543, 654, 864, 915
Cac8I GCNNGC 4 cut(s) 581, 602, 686, 749
CfoI GCGC 1 cut(s) 911
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 812, 823
CseI GACGC 2 cut(s) 559, 601
Csp6I GTAC 3 cut(s) 309, 524, 719
CviAII CATG 4 cut(s) 283, 933, 940, 962
CviQI GTAC 3 cut(s) 309, 524, 719
DdeI CTNAG 2 cut(s) 840, 999
DpnI GATC 3 cut(s) 94, 208, 1056
DpnII GATC 3 cut(s) 92, 206, 1054
EciI GGCGGA 2 cut(s) 696, 771
EcoRII CCWGG 1 cut(s) 457
FaeI CATG 4 cut(s) 286, 936, 943, 965
FalI AAGNNNNNCTT 6 cut(s) 102, 134, 652, 684, 694, 726
FaqI GGGAC 4 cut(s) 440, 557, 599, 627
FatI CATG 4 cut(s) 282, 932, 939, 961
FauI CCCGC 6 cut(s) 567, 588, 609, 652, 693, 756
FauNDI CATATG 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 159, 822
FokI GGATG 5 cut(s) 203, 530, 641, 851, 902
Fsp4HI GCNGC 2 cut(s) 159, 822
FspBI CTAG 3 cut(s) 639, 681, 1043
GlaI GCGC 1 cut(s) 910
GluI GCNGC 2 cut(s) 159, 822
GsuI CTGGAG 1 cut(s) 918
HaeIII GGCC 2 cut(s) 813, 824
HapII CCGG 6 cut(s) 494, 528, 605, 626, 690, 752
HgaI GACGC 2 cut(s) 559, 601
HhaI GCGC 1 cut(s) 911
Hin1II CATG 4 cut(s) 286, 936, 943, 965
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HindIII AAGCTT 1 cut(s) 589
HinfI GANTC 3 cut(s) 236, 263, 799
HpaII CCGG 6 cut(s) 494, 528, 605, 626, 690, 752
HphI GGTGA 4 cut(s) 231, 363, 381, 456
Hpy166II GTNNAC 3 cut(s) 400, 431, 464
Hpy188III TCNNGA 1 cut(s) 897
Hpy8I GTNNAC 3 cut(s) 400, 431, 464
Hpy99I CGWCG 1 cut(s) 820
HpyAV CCTTC 6 cut(s) 79, 403, 425, 511, 720, 985
HpyCH4III ACNGT 1 cut(s) 1051
HpyCH4IV ACGT 1 cut(s) 402
HpyCH4V TGCA 4 cut(s) 33, 161, 296, 1037
HpyF10VI GCNNNNNNNGC 8 cut(s) 447, 516, 576, 597, 685, 850, 908, 971
HpyF3I CTNAG 2 cut(s) 840, 999
HpySE526I ACGT 1 cut(s) 402
Hsp92II CATG 4 cut(s) 286, 936, 943, 965
HspAI GCGC 1 cut(s) 909
KpnI GGTACC 1 cut(s) 722
Kzo9I GATC 3 cut(s) 92, 206, 1054
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 1 cut(s) 145
MaeI CTAG 3 cut(s) 639, 681, 1043
MaeII ACGT 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 983, 1045
MalI GATC 3 cut(s) 94, 208, 1056
MboI GATC 3 cut(s) 92, 206, 1054
MboII GAAGA 3 cut(s) 102, 110, 705
MhlI GDGCHC 1 cut(s) 855
MluCI AATT 3 cut(s) 167, 276, 880
MlyI GAGTC 1 cut(s) 808
MmeI TCCRAC 3 cut(s) 152, 244, 943
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 50, 176
MspI CCGG 6 cut(s) 494, 528, 605, 626, 690, 752
MspR9I CCNGG 4 cut(s) 459, 528, 627, 690
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 8 cut(s) 447, 516, 576, 597, 685, 850, 908, 971
NciI CCSGG 3 cut(s) 528, 627, 690
NdeI CATATG 1 cut(s) 226
NdeII GATC 3 cut(s) 92, 206, 1054
NlaIII CATG 4 cut(s) 286, 936, 943, 965
NlaIV GGNNCC 1 cut(s) 720
NmeAIII GCCGAG 1 cut(s) 822
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 2 cut(s) 236, 263
PkrI GCNGC 2 cut(s) 160, 823
PleI GAGTC 1 cut(s) 807
PpsI GAGTC 1 cut(s) 807
Psp6I CCWGG 1 cut(s) 457
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 2 cut(s) 812, 823
RsaI GTAC 3 cut(s) 310, 525, 720
RsaNI GTAC 3 cut(s) 309, 524, 719
SaqAI TTAA 2 cut(s) 50, 176
SatI GCNGC 2 cut(s) 159, 822
Sau3AI GATC 3 cut(s) 92, 206, 1054
Sau96I GGNCC 2 cut(s) 812, 823
SchI GAGTC 1 cut(s) 808
ScrFI CCNGG 4 cut(s) 459, 528, 627, 690
SduI GDGCHC 1 cut(s) 855
SgrAI CRCCGGYG 1 cut(s) 751
Sse9I AATT 3 cut(s) 167, 276, 880
SspMI CTAG 3 cut(s) 639, 681, 1043
StyD4I CCNGG 4 cut(s) 457, 526, 625, 688
TaaI ACNGT 1 cut(s) 1051
TaiI ACGT 1 cut(s) 405
TaqI TCGA 2 cut(s) 675, 1075
TasI AATT 3 cut(s) 167, 276, 880
TatI WGTACW 1 cut(s) 308
TauI GCSGC 1 cut(s) 824
TfiI GAWTC 2 cut(s) 236, 263
Tru1I TTAA 2 cut(s) 50, 176
Tru9I TTAA 2 cut(s) 50, 176
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 2 cut(s) 893, 928
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 3 cut(s) 639, 681, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.