Rw0G001570

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00045
OG0013638
Physical Location & Seq
Forward (+)
25392 .. 28089
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001570.1

Sequence Viewer

Length: 1029 bp
ATGTTATTGAAATTTGTGCATGAATTAGTCGTTTTTTTTTTTAATGTTAGATTTAATAACCACTTATTCAATTGTTATGCAAGAAAATCACATAGATTACTAAAGGGTCTTACAAAACCCCCTCCAACCCATCACAGAAGTCTGTTTCTCAGAACTGCAAAGAAGTTGAATTTAGTAAAGCGCATTGAGTATAACCCATTTGGTTCATCAAAGCAACAAAACCAAGAACCCTATGGTTTGAATTCACCACTTTCATTGCCACCTTATGATTCACTAGCTCCACTTTCCTTGCCTGATGCAAATGCTCCTCCATTTTGTACTTACCCACCCAACACTCCACAAACCCCCTCTACAACTACTCCGACACCCACCACATCATCACCCCCAAGCCCACAATCACCTTTTCTTTACGTTCCACCAATTCTTCCCATGCAAAGCCCACCACTAGTCCCAATAGGCACTATCCCAGGCCCACCACAATCACAATCTATCTCCGTACCTGGGCCGCCGGAGTCTATACCGAGTCCGACCATCTACTTCCCAGGCCCACCGCAATCTATCCCGACCCCTAATCCACCCGAAACCGTCCCAAGCCCACCGGATTACGAGCCCAGCCCGCCATATTTTTCTATTCCAAGCCCGCCTTCTTTCGTCCCATCTCCTTCCTATGGGTTCCAACCAAGCCCACCAGTGTTCGAACCCCCTGTTGTGTTCCCTCCACCAACCACTCCACCAAGTCCAAAGAAAGGCCCGACAACGGCCCTTTGGTGCGTGGCCAAGCCGTCGGTGCCCGACCCAATCATCCAAGAAGCCATGAACTACGCTTGCGGGTCTGGAGCAGATTGTGATGCCATTCTGCCCAATGGGTCATGCTTTGAGCCCAACACATTGTATGCCCATGCTTCGTTTGCCTTCAATAGTTACTGGCAAAGGACCAGGGTTGCTGGTAGCACCTGTTCGTTTGGAGGAACAGCCATACTAGTCACAGTTGATCCAAGTTATGATGGGTGCCGGTTTGATTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

342

Amino Acids

37.16

Weight (kDa)

8.06

Isoelectric Point (pI)

79.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 255 - 325 3.5e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 787, 1008
AciI CCGC 5 cut(s) 506, 551, 617, 641, 828
AclWI GGATC 1 cut(s) 986
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 3 cut(s) 11, 169, 241
AfaI GTAC 2 cut(s) 319, 498
AfiI CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
AgsI TTSAA 5 cut(s) 10, 70, 169, 241, 916
AhlI ACTAGT 2 cut(s) 445, 979
AjnI CCWGG 4 cut(s) 466, 499, 541, 935
AjuI GAANNNNNNNTTGG 2 cut(s) 628, 660
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwI GGATC 1 cut(s) 986
AoxI GGCC 6 cut(s) 469, 503, 544, 748, 759, 774
ApoI RAATTY 3 cut(s) 11, 169, 241
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 6 cut(s) 470, 503, 545, 749, 760, 933
AsuHPI GGTGA 3 cut(s) 237, 372, 390
AsuII TTCGAA 1 cut(s) 696
AvaII GGWCC 1 cut(s) 933
BaeGI GKGCMC 1 cut(s) 792
BalI TGGCCA 1 cut(s) 776
BanI GGYRCC 2 cut(s) 787, 1008
BanII GRGCYC 2 cut(s) 612, 882
BccI CCATC 4 cut(s) 138, 539, 664, 998
BceAI ACGGC 2 cut(s) 766, 774
BciT130I CCWGG 4 cut(s) 468, 501, 543, 937
BcuI ACTAGT 2 cut(s) 445, 979
BfaI CTAG 3 cut(s) 275, 446, 980
BisI GCNGC 1 cut(s) 506
BlsI GCNGC 1 cut(s) 507
Bme1390I CCNGG 4 cut(s) 468, 501, 543, 937
Bme18I GGWCC 1 cut(s) 933
BmgT120I GGNCC 6 cut(s) 470, 503, 545, 749, 760, 933
BmiI GGNNCC 3 cut(s) 674, 789, 1010
BmrFI CCNGG 4 cut(s) 468, 501, 543, 937
BmsI GCATC 2 cut(s) 286, 838
BpmI CTGGAG 1 cut(s) 855
Bpu14I TTCGAA 1 cut(s) 696
BsaJI CCNNGG 4 cut(s) 466, 500, 541, 936
BsaWI WCCGGW 1 cut(s) 598
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
Bse118I RCCGGY 1 cut(s) 1011
Bse1I ACTGG 2 cut(s) 689, 929
Bse3DI GCAATG 1 cut(s) 254
BseBI CCWGG 4 cut(s) 468, 501, 543, 937
BseDI CCNNGG 4 cut(s) 466, 500, 541, 936
BseGI GGATG 1 cut(s) 801
BseLI CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
BseMI GCAATG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 163
BseNI ACTGG 2 cut(s) 689, 929
BseRI GAGGAG 1 cut(s) 297
BseSI GKGCMC 1 cut(s) 792
BseYI CCCAGC 1 cut(s) 611
BshFI GGCC 6 cut(s) 471, 505, 546, 750, 761, 776
BshNI GGYRCC 2 cut(s) 787, 1008
BsiSI CCGG 3 cut(s) 509, 599, 1012
BslFI GGGAC 3 cut(s) 434, 572, 638
BslI CCNNNNNNNGG 4 cut(s) 501, 668, 746, 757
BsmFI GGGAC 3 cut(s) 434, 572, 638
BsnI GGCC 6 cut(s) 471, 505, 546, 750, 761, 776
Bsp119I TTCGAA 1 cut(s) 696
Bsp1286I GDGCHC 3 cut(s) 612, 792, 882
Bsp143I GATC 1 cut(s) 991
BspACI CCGC 5 cut(s) 506, 551, 617, 641, 828
BspANI GGCC 6 cut(s) 471, 505, 546, 750, 761, 776
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 674, 789, 1010
BspPI GGATC 1 cut(s) 986
BspT104I TTCGAA 1 cut(s) 696
BspT107I GGYRCC 2 cut(s) 787, 1008
BsrDI GCAATG 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 1011
BsrI ACTGG 2 cut(s) 689, 929
BssAI RCCGGY 1 cut(s) 1011
BssECI CCNNGG 4 cut(s) 466, 500, 541, 936
BssMI GATC 1 cut(s) 991
Bst2UI CCWGG 4 cut(s) 468, 501, 543, 937
Bst4CI ACNGT 2 cut(s) 586, 988
BstBI TTCGAA 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 617, 641, 826
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 1 cut(s) 801
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 994
BstMBI GATC 1 cut(s) 991
BstMWI GCNNNNNNNGC 3 cut(s) 616, 787, 908
BstNI CCWGG 4 cut(s) 468, 501, 543, 937
BstSCI CCNGG 4 cut(s) 466, 499, 541, 935
BstSLI GKGCMC 1 cut(s) 792
BsuRI GGCC 6 cut(s) 471, 505, 546, 750, 761, 776
BtsCI GGATG 1 cut(s) 801
BtsIMutI CAGTG 1 cut(s) 696
Cac8I GCNNGC 3 cut(s) 617, 641, 826
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 1011
Cfr13I GGNCC 6 cut(s) 470, 503, 545, 749, 760, 933
Csp6I GTAC 2 cut(s) 318, 497
CspCI CAANNNNNGTGG 4 cut(s) 237, 270, 272, 305
CviAII CATG 5 cut(s) 20, 430, 814, 870, 899
CviQI GTAC 2 cut(s) 318, 497
DdeI CTNAG 1 cut(s) 149
DpnI GATC 1 cut(s) 993
DpnII GATC 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 774
Eco24I GRGCYC 2 cut(s) 612, 882
Eco47I GGWCC 1 cut(s) 933
EcoRI GAATTC 1 cut(s) 241
EcoRII CCWGG 4 cut(s) 466, 499, 541, 935
EcoT38I GRGCYC 2 cut(s) 612, 882
FaeI CATG 5 cut(s) 23, 433, 817, 873, 902
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FaqI GGGAC 3 cut(s) 434, 572, 638
FatI CATG 5 cut(s) 19, 429, 813, 869, 898
FauI CCCGC 3 cut(s) 624, 648, 821
Fnu4HI GCNGC 1 cut(s) 506
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 2 cut(s) 612, 882
Fsp4HI GCNGC 1 cut(s) 506
FspBI CTAG 3 cut(s) 275, 446, 980
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 506
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 6 cut(s) 471, 505, 546, 750, 761, 776
HapII CCGG 3 cut(s) 509, 599, 1012
HhaI GCGC 1 cut(s) 183
Hin1II CATG 5 cut(s) 23, 433, 817, 873, 902
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 3 cut(s) 269, 512, 523
HpaII CCGG 3 cut(s) 509, 599, 1012
HphI GGTGA 3 cut(s) 237, 372, 390
Hpy188I TCNGA 3 cut(s) 152, 363, 528
Hpy188III TCNNGA 2 cut(s) 562, 834
Hpy99I CGWCG 1 cut(s) 787
HpyAV CCTTC 3 cut(s) 654, 672, 922
HpyCH4III ACNGT 2 cut(s) 586, 988
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 5 cut(s) 19, 80, 158, 299, 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 616, 787, 908
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 5 cut(s) 23, 433, 817, 873, 902
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 991
LmnI GCTCC 3 cut(s) 283, 310, 836
LweI GCATC 2 cut(s) 286, 838
MaeI CTAG 3 cut(s) 275, 446, 980
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 2 cut(s) 920, 982
MalI GATC 1 cut(s) 993
MboI GATC 1 cut(s) 991
MboII GAAGA 1 cut(s) 416
MfeI CAATTG 1 cut(s) 70
MhlI GDGCHC 3 cut(s) 612, 792, 882
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 6 cut(s) 11, 23, 70, 169, 241, 420
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 2 cut(s) 521, 532
MmeI TCCRAC 4 cut(s) 149, 386, 551, 700
MnlI CCTC 5 cut(s) 132, 318, 358, 726, 959
Mox20I TGGCCA 1 cut(s) 776
MscI TGGCCA 1 cut(s) 776
MseI TTAA 2 cut(s) 42, 54
Msp20I TGGCCA 1 cut(s) 776
MspI CCGG 3 cut(s) 509, 599, 1012
MspR9I CCNGG 4 cut(s) 468, 501, 543, 937
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 4 cut(s) 468, 501, 543, 937
MwoI GCNNNNNNNGC 3 cut(s) 616, 787, 908
NdeII GATC 1 cut(s) 991
NlaIII CATG 5 cut(s) 23, 433, 817, 873, 902
NlaIV GGNNCC 3 cut(s) 674, 789, 1010
NmuCI GTSAC 1 cut(s) 982
NspV TTCGAA 1 cut(s) 696
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 1 cut(s) 507
PleI GAGTC 2 cut(s) 520, 531
PpsI GAGTC 2 cut(s) 520, 531
Psp6I CCWGG 4 cut(s) 466, 499, 541, 935
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 4 cut(s) 466, 499, 541, 935
PspN4I GGNNCC 3 cut(s) 674, 789, 1010
PspPI GGNCC 6 cut(s) 470, 503, 545, 749, 760, 933
PsrI GAACNNNNNNTAC 2 cut(s) 940, 972
RsaI GTAC 2 cut(s) 319, 498
RsaNI GTAC 2 cut(s) 318, 497
SaqAI TTAA 2 cut(s) 42, 54
SatI GCNGC 1 cut(s) 506
Sau3AI GATC 1 cut(s) 991
Sau96I GGNCC 6 cut(s) 470, 503, 545, 749, 760, 933
SchI GAGTC 2 cut(s) 521, 532
ScrFI CCNGG 4 cut(s) 468, 501, 543, 937
SduI GDGCHC 3 cut(s) 612, 792, 882
SetI ASST 6 cut(s) 265, 280, 403, 414, 502, 956
SfaNI GCATC 2 cut(s) 286, 838
SfuI TTCGAA 1 cut(s) 696
SinI GGWCC 1 cut(s) 933
SpeI ACTAGT 2 cut(s) 445, 979
Sse9I AATT 6 cut(s) 11, 23, 70, 169, 241, 420
SsiI CCGC 5 cut(s) 506, 551, 617, 641, 828
SspMI CTAG 3 cut(s) 275, 446, 980
StyD4I CCNGG 4 cut(s) 466, 499, 541, 935
TaaI ACNGT 2 cut(s) 586, 988
TaiI ACGT 1 cut(s) 414
TaqI TCGA 1 cut(s) 696
TasI AATT 6 cut(s) 11, 23, 70, 169, 241, 420
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 508
TfiI GAWTC 1 cut(s) 269
Tru1I TTAA 2 cut(s) 42, 54
Tru9I TTAA 2 cut(s) 42, 54
TscAI CASTG 1 cut(s) 696
TseFI GTSAC 1 cut(s) 982
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 4 cut(s) 36, 195, 243, 830
TspGWI ACGGA 1 cut(s) 484
TspRI CASTG 1 cut(s) 696
VpaK11BI GGWCC 1 cut(s) 933
XapI RAATTY 3 cut(s) 11, 169, 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XspI CTAG 3 cut(s) 275, 446, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.