Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005907

Physical Location & Seq

Genomic Coordinates Reverse (-)

9066502 .. 9067056

Gene Structure 555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCAACTCCTGCAGAGAACGAGGCCTCCATCAAGCAAGAGAGCGGTCCCTCCGGCACCGTCCAAGATAAGCCGAAGAAGATCGTGGTACGGACCGGAGACGGCGAGGTCTTTGAGTTGAAGGAAGAGGTGGCAATGGAGATGGAAACCATCAAGACCTTCTTCATGGAGGACAACATTTCTTATGAGACGGTGATGCCCTTAACCAACGTGGACAGCTGGGAGTTGGTCAAGGTTATAGAGTACTGCAGCAAGTATGTGGAACTCAAAAACAAGGAAAACTTCCACAAGGAACTCAAGGCCTTCCAGGACGAGTTCGTCAAGAGCATGAGCCCTAAGACATTACTGTCTCTCTCCAACGTGGCCAATTACTTGGAAATCAAATATTTCCTTGACTTCATCTGTCAGGCCATTGCGGATCATATTAAGAGTAAGGATGTTGAATATGTGAGGGAACTCTTTGGAGTGGAGAATGACTTCACTGAGGAGGAGTATGAGATGGCTAAGACAGAGGCTCCTTGGGCTCATGAAAACCTTGATAAGGATCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

185

Amino Acids

21.35

Weight (kDa)

4.58

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	26 - 87	8.7e-13	Skp1 family, tetramerisation domain
Skp1	PF01466	128 - 175	1.2e-16	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14710 FvH4_3g14720 FvH4_3g14730
malus_domestica	MD02G1116700.v1.1 MD08G1210300.v1.1 MD10G1208900.v1.1
prunus_persica	Prupe.4G132400_v2.0.a1
pyrus_communis	pycom08g18130 pycom10g17770
rosa_chinensis	RchiOBHm_Chr5g0024221 RchiOBHm_Chr5g0024251
rosa_laevigata	RLG00000032781 RLG00000032787
rosa_multiflora	Rmu_sc0009993.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055030 Rroxscaffold_1G00055730
rosa_rugosa	Rorug05G0082600 Rorug05G0082800
rosa_samantha	Rh5AG173200 Rh5BG170000 Rh5BG170100 Rh5CG185800 Rh5CG186200 Rh5DG172300 Rh5DG172700
rosa_wichuraiana	Rw0G000840 Rw5G015630 Rw5G015640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	107, 317, 346
AccB1I	GGYRCC	1 cut(s)	56
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	2 cut(s)	45, 416
AclWI	GGATC	2 cut(s)	426, 552
AcoI	YGGCCR	1 cut(s)	363
AfaI	GTAC	2 cut(s)	90, 245
AfiI	CCNNNNNNNGG	1 cut(s)	541
AgsI	TTSAA	2 cut(s)	121, 443
AjnI	CCWGG	1 cut(s)	306
AloI	GAACNNNNNNTCC	2 cut(s)	11, 43
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	93, 182, 354
AlwI	GGATC	2 cut(s)	426, 552
AoxI	GGCC	4 cut(s)	24, 300, 363, 408
ApeKI	GCWGC	1 cut(s)	249
Asp700I	GAANNNNTTC	1 cut(s)	476
AspS9I	GGNCC	2 cut(s)	47, 93
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	47, 93
BalI	TGGCCA	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	2 cut(s)	335, 526
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	4 cut(s)	38, 136, 158, 493
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	1 cut(s)	308
BcoDI	GTCTC	3 cut(s)	93, 182, 354
BfmI	CTRYAG	2 cut(s)	12, 247
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	2 cut(s)	47, 93
BmgT120I	GGNCC	2 cut(s)	47, 93
BmiI	GGNNCC	3 cut(s)	49, 58, 516
BmrFI	CCNGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	281
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	518
BsaWI	WCCGGW	1 cut(s)	95
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 499, 529
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse3DI	GCAATG	2 cut(s)	141, 411
Bse8I	GATNNNNATC	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	308
BseDI	CCNNGG	1 cut(s)	518
BseGI	GGATG	1 cut(s)	442
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMI	GCAATG	2 cut(s)	141, 411
BseMII	CTCAG	1 cut(s)	474
BseRI	GAGGAG	2 cut(s)	500, 503
BseXI	GCAGC	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	219
BshFI	GGCC	4 cut(s)	26, 302, 365, 410
BshNI	GGYRCC	1 cut(s)	56
BsiSI	CCGG	2 cut(s)	54, 96
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	3 cut(s)	93, 182, 354
BsmBI	CGTCTC	2 cut(s)	93, 182
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	26, 302, 365, 410
Bsp1286I	GDGCHC	2 cut(s)	335, 526
Bsp143I	GATC	3 cut(s)	81, 418, 544
BspACI	CCGC	2 cut(s)	45, 416
BspANI	GGCC	4 cut(s)	26, 302, 365, 410
BspCNI	CTCAG	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	526
BspLI	GGNNCC	3 cut(s)	49, 58, 516
BspMAI	CTGCAG	2 cut(s)	16, 251
BspPI	GGATC	2 cut(s)	426, 552
BspT107I	GGYRCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	141, 411
BssECI	CCNNGG	1 cut(s)	518
BssMI	GATC	3 cut(s)	81, 418, 544
BssT1I	CCWWGG	1 cut(s)	518
Bst2UI	CCWGG	1 cut(s)	308
Bst4CI	ACNGT	3 cut(s)	61, 193, 348
Bst6I	CTCTTC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	336, 483, 504
BstENI	CCTNNNNNAGG	1 cut(s)	539
BstF5I	GGATG	1 cut(s)	442
BstKTI	GATC	3 cut(s)	84, 421, 547
BstMAI	GTCTC	3 cut(s)	93, 182, 354
BstMBI	GATC	3 cut(s)	81, 418, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	521
BstNI	CCWGG	1 cut(s)	308
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	12, 247
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	544
BsuRI	GGCC	4 cut(s)	26, 302, 365, 410
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	480
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	2 cut(s)	47, 93
CpoI	CGGWCCG	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	89, 244
CspI	CGGWCCG	1 cut(s)	93
CviAII	CATG	3 cut(s)	166, 328, 527
CviQI	GTAC	2 cut(s)	89, 244
DdeI	CTNAG	3 cut(s)	336, 483, 504
DpnI	GATC	3 cut(s)	83, 420, 546
DpnII	GATC	3 cut(s)	81, 418, 544
DrdI	GACNNNNNNGTC	3 cut(s)	107, 317, 346
DseDI	GACNNNNNNGTC	3 cut(s)	107, 317, 346
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	518
Eco147I	AGGCCT	2 cut(s)	26, 302
Eco24I	GRGCYC	2 cut(s)	335, 526
Eco47I	GGWCC	2 cut(s)	47, 93
EcoNI	CCTNNNNNAGG	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	306
EcoT14I	CCWWGG	1 cut(s)	518
EcoT38I	GRGCYC	2 cut(s)	335, 526
ErhI	CCWWGG	1 cut(s)	518
Esp3I	CGTCTC	2 cut(s)	93, 182
FaeI	CATG	3 cut(s)	169, 331, 530
FaiI	YATR	9 cut(s)	167, 186, 239, 258, 329, 423, 447, 495, 528
FalI	AAGNNNNNCTT	4 cut(s)	146, 178, 266, 298
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	3 cut(s)	165, 327, 526
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	2 cut(s)	335, 526
Fsp4HI	GCNGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	250
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	4 cut(s)	26, 302, 365, 410
HapII	CCGG	2 cut(s)	54, 96
Hin1II	CATG	3 cut(s)	169, 331, 530
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaII	CCGG	2 cut(s)	54, 96
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	6, 214
Hpy188III	TCNNGA	3 cut(s)	154, 322, 527
Hpy8I	GTNNAC	2 cut(s)	6, 214
HpyAV	CCTTC	3 cut(s)	115, 169, 313
HpyCH4III	ACNGT	3 cut(s)	61, 193, 348
HpyCH4IV	ACGT	2 cut(s)	210, 360
HpyCH4V	TGCA	2 cut(s)	14, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	521
HpyF3I	CTNAG	3 cut(s)	336, 483, 504
HpySE526I	ACGT	2 cut(s)	210, 360
Hsp92II	CATG	3 cut(s)	169, 331, 530
Kzo9I	GATC	3 cut(s)	81, 418, 544
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	7 cut(s)	24, 67, 109, 205, 293, 320, 392
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	186
MaeII	ACGT	2 cut(s)	210, 360
MalI	GATC	3 cut(s)	83, 420, 546
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	3 cut(s)	81, 418, 544
MboII	GAAGA	4 cut(s)	88, 91, 137, 154
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	2 cut(s)	335, 526
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	1 cut(s)	367
MluNI	TGGCCA	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	381
Mox20I	TGGCCA	1 cut(s)	365
MroXI	GAANNNNTTC	1 cut(s)	476
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	3 cut(s)	203, 426, 553
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	2 cut(s)	54, 96
MspR9I	CCNGG	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	521
NdeII	GATC	3 cut(s)	81, 418, 544
NlaIII	CATG	3 cut(s)	169, 331, 530
NlaIV	GGNNCC	3 cut(s)	49, 58, 516
PagI	TCATGA	1 cut(s)	526
PceI	AGGCCT	2 cut(s)	26, 302
PdmI	GAANNNNTTC	1 cut(s)	476
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	306
PspN4I	GGNNCC	3 cut(s)	49, 58, 516
PspPI	GGNCC	2 cut(s)	47, 93
PstI	CTGCAG	2 cut(s)	16, 251
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	90, 245
RsaNI	GTAC	2 cut(s)	89, 244
Rsr2I	CGGWCCG	1 cut(s)	93
RsrII	CGGWCCG	1 cut(s)	93
SaqAI	TTAA	3 cut(s)	203, 426, 553
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	3 cut(s)	81, 418, 544
Sau96I	GGNCC	2 cut(s)	47, 93
ScaI	AGTACT	1 cut(s)	245
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	2 cut(s)	335, 526
SetI	ASST	8 cut(s)	111, 132, 161, 213, 221, 237, 363, 537
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	2 cut(s)	12, 247
SinI	GGWCC	2 cut(s)	47, 93
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	1 cut(s)	367
SseBI	AGGCCT	2 cut(s)	26, 302
SsiI	CCGC	2 cut(s)	45, 416
SspI	AATATT	1 cut(s)	386
StuI	AGGCCT	2 cut(s)	26, 302
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	518
TaaI	ACNGT	3 cut(s)	61, 193, 348
TaiI	ACGT	2 cut(s)	213, 363
TasI	AATT	1 cut(s)	367
TatI	WGTACW	1 cut(s)	243
Tru1I	TTAA	3 cut(s)	203, 426, 553
Tru9I	TTAA	3 cut(s)	203, 426, 553
TscAI	CASTG	1 cut(s)	487
TseI	GCWGC	1 cut(s)	249
TspDTI	ATGAA	3 cut(s)	154, 388, 543
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	487
VpaK11BI	GGWCC	2 cut(s)	47, 93
XagI	CCTNNNNNAGG	1 cut(s)	539
XmnI	GAANNNNTTC	1 cut(s)	476
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.