MD02G1116700.v1.1

modification-dependent protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0005907
Physical Location & Seq
Reverse (-)
9518249 .. 9518452
204 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1116700.v1.1.491

Sequence Viewer

Length: 204 bp
ATGGAGCTGATCCTGGCTGCCGACTTCTTGCACGTCGATCTATTGCTGGAAGTGCTGAACCAGACCGTGGCGGATCAAATCAAGAACAAGAACGTCGAGCATATGAGGAAGTTGTTCGGCGTCGAGAGTGATTACACGCCTGAGGAAGAACAGAAGCTTTGCGAGGAGTATGCTTGGGCTTTTGAAAGACATGTCGTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

68

Amino Acids

7.94

Weight (kDa)

4.6

Isoelectric Point (pI)

29.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1 PF01466 15 - 60 3.4e-19 Skp1 family, dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 67
AciI CCGC 1 cut(s) 71
AclWI GGATC 2 cut(s) 4, 81
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 67
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 1 cut(s) 185
AjiI CACGTC 1 cut(s) 34
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 2 cut(s) 7, 157
AluI AGCT 2 cut(s) 7, 157
AlwI GGATC 2 cut(s) 4, 81
ApeKI GCWGC 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 4
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 14
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 14
BmgBI CACGTC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 14
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse21I CCTNAGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 66
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 4
BslI CCNNNNNNNGG 1 cut(s) 67
Bsp143I GATC 3 cut(s) 9, 37, 73
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 133
BspPI GGATC 2 cut(s) 4, 81
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 9, 37, 73
BssNI GRCGYC 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 67
BstACI GRCGYC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 141
BstDSI CCRYGG 1 cut(s) 66
BstKTI GATC 3 cut(s) 12, 40, 76
BstMBI GATC 3 cut(s) 9, 37, 73
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 66
BtrI CACGTC 1 cut(s) 34
CseI GACGC 1 cut(s) 109
CviAII CATG 1 cut(s) 191
CviJI RGCY 4 cut(s) 7, 17, 157, 179
CviKI_1 RGCY 4 cut(s) 7, 17, 157, 179
DdeI CTNAG 1 cut(s) 141
DpnI GATC 3 cut(s) 11, 39, 75
DpnII GATC 3 cut(s) 9, 37, 73
EciI GGCGGA 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 194
FaiI YATR 4 cut(s) 102, 104, 171, 192
FatI CATG 1 cut(s) 190
FauNDI CATATG 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 1 cut(s) 194
HindIII AAGCTT 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 203
Hpy188III TCNNGA 2 cut(s) 82, 124
Hpy99I CGWCG 3 cut(s) 38, 98, 125
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 2 cut(s) 33, 93
HpyCH4V TGCA 1 cut(s) 31
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 141
HpySE526I ACGT 2 cut(s) 33, 93
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 3 cut(s) 9, 37, 73
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 26, 32, 74, 153
Lsp1109I GCAGC 1 cut(s) 4
MaeII ACGT 2 cut(s) 33, 93
MalI GATC 3 cut(s) 11, 39, 75
MboI GATC 3 cut(s) 9, 37, 73
MboII GAAGA 1 cut(s) 158
MnlI CCTC 3 cut(s) 99, 136, 157
MroXI GAANNNNTTC 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeI CATATG 1 cut(s) 102
NdeII GATC 3 cut(s) 9, 37, 73
NlaIII CATG 1 cut(s) 194
NspI RCATGY 1 cut(s) 194
PciI ACATGT 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 67
PkrI GCNGC 1 cut(s) 19
PscI ACATGT 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 3 cut(s) 9, 37, 73
ScrFI CCNGG 1 cut(s) 14
SetI ASST 4 cut(s) 9, 36, 96, 159
SsiI CCGC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 2 cut(s) 36, 96
TaqI TCGA 3 cut(s) 36, 96, 123
TseI GCWGC 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 67
XceI RCATGY 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.