Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005907

Physical Location & Seq

Genomic Coordinates Reverse (-)

7325910 .. 7326951

Gene Structure 1042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G132400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCGGCCGAGGAGGAGAAGAACGACGCCGCGCCGGACGGGGAGAAGACGAAGATCTCGCTCAAGACCTCCGAGGGCGAGGTCTTCGAGATCGAGGAGAACGTCGCGATGGAGTTTCACACCGTCAAGGCGTTCTTCCAAGACGAAGGCGTTTCGCGCGAAGTGGTGATGCCGATCCCCAACGTCAACAGCGTCGAGCTCGTCAAGATCATCAATTTCTGTACCAAAACGCTTGAGCTCAAGCGCAAGGCCGATCACGAGGAGAATGCGAAGAAGGAGCTCCGGCTGTTCTACCAGGACTTCGTCAAGGACGAGACCACCGAGCACATCATGGAGCTGATCCTGGCCGCCGATTACTTGCACGTCGATGATTTGCTGGAAGTTCTGAACCAGTGCGTGGCGGATCGGATCAAGAACAAGAGCGTTGAGTACGTGAGGAAGCTGTTCGGAGTCGAGAACGATTTCACTCCTGAAGAAGAGCAGAAGCTCCGCGAAGAGTATGCTTGGGCTTTTGAAGGAGTTGATGAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

178

Amino Acids

20.54

Weight (kDa)

4.54

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14710 FvH4_3g14720 FvH4_3g14730
malus_domestica	MD02G1116700.v1.1 MD08G1210300.v1.1 MD10G1208900.v1.1
prunus_persica	Prupe.4G132400_v2.0.a1
pyrus_communis	pycom08g18130 pycom10g17770
rosa_chinensis	RchiOBHm_Chr5g0024221 RchiOBHm_Chr5g0024251
rosa_laevigata	RLG00000032781 RLG00000032787
rosa_multiflora	Rmu_sc0009993.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055030 Rroxscaffold_1G00055730
rosa_rugosa	Rorug05G0082600 Rorug05G0082800
rosa_samantha	Rh5AG173200 Rh5BG170000 Rh5BG170100 Rh5CG185800 Rh5CG186200 Rh5DG172300 Rh5DG172700
rosa_wichuraiana	Rw0G000840 Rw5G015630 Rw5G015640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	397
AccII	CGCG	5 cut(s)	32, 107, 157, 159, 492
AciI	CCGC	4 cut(s)	30, 348, 401, 490
AclWI	GGATC	4 cut(s)	169, 334, 411, 416
AcoI	YGGCCR	2 cut(s)	6, 345
AcuI	CTGAAG	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	2 cut(s)	223, 431
AfiI	CCNNNNNNNGG	1 cut(s)	397
AgsI	TTSAA	1 cut(s)	515
AjiI	CACGTC	1 cut(s)	364
AjnI	CCWGG	2 cut(s)	294, 342
AluBI	AGCT	6 cut(s)	199, 238, 280, 337, 442, 487
AluI	AGCT	6 cut(s)	199, 238, 280, 337, 442, 487
Alw21I	GWGCWC	4 cut(s)	201, 240, 282, 327
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	4 cut(s)	169, 334, 411, 416
AoxI	GGCC	3 cut(s)	6, 249, 345
Asp700I	GAANNNNTTC	2 cut(s)	443, 461
AspLEI	GCGC	3 cut(s)	34, 159, 246
AsuHPI	GGTGA	1 cut(s)	178
BanII	GRGCYC	3 cut(s)	201, 240, 282
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	53, 76
Bbv12I	GWGCWC	4 cut(s)	201, 240, 282, 327
BccI	CCATC	1 cut(s)	103
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 482, 516
BciT130I	CCWGG	2 cut(s)	296, 344
BcoDI	GTCTC	1 cut(s)	308
BglII	AGATCT	1 cut(s)	54
BisI	GCNGC	2 cut(s)	30, 348
BlsI	GCNGC	2 cut(s)	31, 349
Bme1390I	CCNGG	2 cut(s)	296, 344
BmgBI	CACGTC	1 cut(s)	364
BmrFI	CCNGG	2 cut(s)	296, 344
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	2 cut(s)	53, 76
BpuEI	CTTGAG	3 cut(s)	47, 224, 254
BsaAI	YACGTR	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	173
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	2 cut(s)	9, 72
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	391
Bse8I	GATNNNNATC	1 cut(s)	173
BseBI	CCWGG	2 cut(s)	296, 344
BseDI	CCNNGG	2 cut(s)	9, 72
BseJI	GATNNNNATC	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	391
BseRI	GAGGAG	4 cut(s)	26, 29, 110, 275
BseX3I	CGGCCG	1 cut(s)	6
Bsh1236I	CGCG	5 cut(s)	32, 107, 157, 159, 492
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	8, 251, 347
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	4 cut(s)	201, 240, 282, 327
BsiSI	CCGG	2 cut(s)	35, 283
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	1 cut(s)	308
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	3 cut(s)	8, 251, 347
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	4 cut(s)	201, 240, 282, 327
Bsp143I	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	4 cut(s)	30, 348, 401, 490
BspANI	GGCC	3 cut(s)	8, 251, 347
BspFNI	CGCG	5 cut(s)	32, 107, 157, 159, 492
BspPI	GGATC	4 cut(s)	169, 334, 411, 416
BspQI	GCTCTTC	1 cut(s)	471
BspTNI	GGTCTC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	9, 72
BssMI	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	2 cut(s)	296, 344
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	471, 489
BstACI	GRCGYC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	433
BstFNI	CGCG	5 cut(s)	32, 107, 157, 159, 492
BstHHI	GCGC	3 cut(s)	34, 159, 246
BstKTI	GATC	8 cut(s)	57, 93, 177, 210, 256, 342, 406, 411
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	2 cut(s)	296, 344
BstSCI	CCNGG	2 cut(s)	294, 342
BstUI	CGCG	5 cut(s)	32, 107, 157, 159, 492
BstV2I	GAAGAC	2 cut(s)	53, 76
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	8, 251, 347
BtgZI	GCGATG	1 cut(s)	122
BtrI	CACGTC	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	398
BtuMI	TCGCGA	1 cut(s)	107
CfoI	GCGC	3 cut(s)	34, 159, 246
CseI	GACGC	2 cut(s)	35, 181
Csp6I	GTAC	2 cut(s)	222, 430
CviAII	CATG	1 cut(s)	331
CviQI	GTAC	2 cut(s)	222, 430
DpnI	GATC	8 cut(s)	56, 92, 176, 209, 255, 341, 405, 410
DpnII	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
EaeI	YGGCCR	2 cut(s)	6, 345
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	471, 489
EarI	CTCTTC	2 cut(s)	471, 489
EciI	GGCGGA	1 cut(s)	416
Ecl136II	GAGCTC	3 cut(s)	199, 238, 280
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	3 cut(s)	201, 240, 282
Eco31I	GGTCTC	1 cut(s)	308
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	3 cut(s)	199, 238, 280
Eco57I	CTGAAG	1 cut(s)	492
EcoICRI	GAGCTC	3 cut(s)	199, 238, 280
EcoRII	CCWGG	2 cut(s)	294, 342
EcoT38I	GRGCYC	3 cut(s)	201, 240, 282
FaeI	CATG	1 cut(s)	334
FaiI	YATR	2 cut(s)	332, 501
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	30, 348
FriOI	GRGCYC	3 cut(s)	201, 240, 282
Fsp4HI	GCNGC	2 cut(s)	30, 348
GlaI	GCGC	3 cut(s)	33, 158, 245
GluI	GCNGC	2 cut(s)	30, 348
HaeIII	GGCC	3 cut(s)	8, 251, 347
HapII	CCGG	2 cut(s)	35, 283
HgaI	GACGC	2 cut(s)	35, 181
HhaI	GCGC	3 cut(s)	34, 159, 246
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	3 cut(s)	32, 157, 244
HinP1I	GCGC	3 cut(s)	32, 157, 244
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	1 cut(s)	450
HpaII	CCGG	2 cut(s)	35, 283
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	73, 387, 408, 449
Hpy188III	TCNNGA	8 cut(s)	64, 88, 106, 205, 257, 412, 454, 470
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	4 cut(s)	29, 107, 197, 368
HpyAV	CCTTC	3 cut(s)	140, 268, 509
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4IV	ACGT	4 cut(s)	102, 183, 363, 432
HpyCH4V	TGCA	1 cut(s)	361
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpySE526I	ACGT	4 cut(s)	102, 183, 363, 432
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	3 cut(s)	32, 157, 244
Kzo9I	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	4 cut(s)	277, 285, 334, 492
LpnPI	CCDG	9 cut(s)	48, 281, 296, 308, 329, 356, 362, 404, 483
LweI	GCATC	1 cut(s)	159
MaeII	ACGT	4 cut(s)	102, 183, 363, 432
MalI	GATC	8 cut(s)	56, 92, 176, 209, 255, 341, 405, 410
MboI	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
MboII	GAAGA	9 cut(s)	31, 58, 64, 76, 127, 283, 485, 488, 506
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	4 cut(s)	201, 240, 282, 327
MluCI	AATT	1 cut(s)	214
MlyI	GAGTC	1 cut(s)	459
MnlI	CCTC	9 cut(s)	4, 7, 67, 73, 79, 88, 253, 429, 520
MroXI	GAANNNNTTC	2 cut(s)	443, 461
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	35, 283
MspR9I	CCNGG	2 cut(s)	296, 344
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	296, 344
MvnI	CGCG	5 cut(s)	32, 107, 157, 159, 492
MwoI	GCNNNNNNNGC	1 cut(s)	156
NdeII	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
NlaIII	CATG	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	34
NruI	TCGCGA	1 cut(s)	107
PciSI	GCTCTTC	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	4 cut(s)	99, 189, 309, 318
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	2 cut(s)	443, 461
PflFI	GACNNNGTC	1 cut(s)	302
PflMI	CCANNNNNTGG	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	31, 349
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
Ppu21I	YACGTR	1 cut(s)	433
Psp124BI	GAGCTC	3 cut(s)	201, 240, 282
Psp6I	CCWGG	2 cut(s)	294, 342
PspGI	CCWGG	2 cut(s)	294, 342
PsuI	RGATCY	1 cut(s)	54
PsyI	GACNNNGTC	1 cut(s)	302
RruI	TCGCGA	1 cut(s)	107
RsaI	GTAC	2 cut(s)	223, 431
RsaNI	GTAC	2 cut(s)	222, 430
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	3 cut(s)	201, 240, 282
SapI	GCTCTTC	1 cut(s)	471
SatI	GCNGC	2 cut(s)	30, 348
Sau3AI	GATC	8 cut(s)	54, 90, 174, 207, 253, 339, 403, 408
SchI	GAGTC	1 cut(s)	459
ScrFI	CCNGG	2 cut(s)	296, 344
SduI	GDGCHC	4 cut(s)	201, 240, 282, 327
SfaNI	GCATC	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	62, 233, 239
SmoI	CTYRAG	3 cut(s)	62, 233, 239
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	4 cut(s)	30, 348, 401, 490
SstI	GAGCTC	3 cut(s)	201, 240, 282
StyD4I	CCNGG	2 cut(s)	294, 342
TaaI	ACNGT	1 cut(s)	124
TaiI	ACGT	4 cut(s)	105, 186, 366, 435
TaqI	TCGA	5 cut(s)	87, 93, 195, 366, 453
TasI	AATT	1 cut(s)	214
TauI	GCSGC	2 cut(s)	32, 350
TscAI	CASTG	1 cut(s)	398
TspRI	CASTG	1 cut(s)	398
Tth111I	GACNNNGTC	1 cut(s)	302
Van91I	CCANNNNNTGG	1 cut(s)	397
XmnI	GAANNNNTTC	2 cut(s)	443, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.