Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005907

Physical Location & Seq

Genomic Coordinates Reverse (-)

20956088 .. 20956693

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGACCGAGGAGAATACGATTGAAGACCCTGCATCCTCCGCCTCTGCCACCGAGGAAAACAAGAATGAAGCCTCCGCCTCCGAGGCGCCGTCTACGACGGAAAACGACGGCGGGGAAAAGAAGAAGATCTCCCTCAAGACCTCCGACGGCGAGGTCTTCGAGATCGACGGGGATATCGCGATGCAGTTCGAGACCGTCAAGTCGTTCTTCCAGGACGAGGGCGTCGGCGACATGGTGATGCCGGTGCCGAACGTGCACAGCGCGGAGCTCGTGAAGATCATCGATTTCTGCACCAAAACCCAACATCTGCATCGGAAAGTGGAGCAAGATGAGGCGTGGAGGAAGGAGCTGAGGAAAATCAGCACCGATTTCGTCAGGGAGTTAACAACCGACCGCGTGATGGAGCTGATCCTGGCCGCCGACTTCTTGCACGTCGATCTATTGCTGGAAGTGCTGAACCAGACCGTGGCGGATCGGATCAAGAACAAGAGCGTCGAGTACGTGAGGAAGTTGTTCGGCGTGGAGAGCGATTACACGCCCGAGGAAGAACAGAAGCTTCGCGAGGAGTATGCTTGGGCTTTTGAAGGAGTCGATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

202

Amino Acids

22.81

Weight (kDa)

4.48

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	42 - 101	1.8e-12	Skp1 family, tetramerisation domain
Skp1	PF01466	149 - 194	3.6e-19	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14710 FvH4_3g14720 FvH4_3g14730
malus_domestica	MD02G1116700.v1.1 MD08G1210300.v1.1 MD10G1208900.v1.1
prunus_persica	Prupe.4G132400_v2.0.a1
pyrus_communis	pycom08g18130 pycom10g17770
rosa_chinensis	RchiOBHm_Chr5g0024221 RchiOBHm_Chr5g0024251
rosa_laevigata	RLG00000032781 RLG00000032787
rosa_multiflora	Rmu_sc0009993.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055030 Rroxscaffold_1G00055730
rosa_rugosa	Rorug05G0082600 Rorug05G0082800
rosa_samantha	Rh5AG173200 Rh5BG170000 Rh5BG170100 Rh5CG185800 Rh5CG186200 Rh5DG172300 Rh5DG172700
rosa_wichuraiana	Rw0G000840 Rw5G015630 Rw5G015640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	155, 202, 224
AccB1I	GGYRCC	2 cut(s)	88, 247
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccI	GTMKAC	2 cut(s)	5, 95
AccII	CGCG	4 cut(s)	182, 266, 399, 564
AciI	CCGC	7 cut(s)	42, 78, 114, 266, 397, 420, 473
AclWI	GGATC	3 cut(s)	406, 483, 488
AcoI	YGGCCR	1 cut(s)	417
AcyI	GRCGYC	2 cut(s)	89, 225
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	3 cut(s)	220, 403, 469
AgsI	TTSAA	2 cut(s)	26, 587
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	213, 414
AluBI	AGCT	4 cut(s)	271, 352, 409, 559
AluI	AGCT	4 cut(s)	271, 352, 409, 559
Alw21I	GWGCWC	2 cut(s)	261, 273
Alw26I	GTCTC	1 cut(s)	188
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	406, 483, 488
Ama87I	CYCGRG	1 cut(s)	542
AoxI	GGCC	1 cut(s)	417
ApaLI	GTGCAC	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	515
AspLEI	GCGC	2 cut(s)	91, 266
AsuHPI	GGTGA	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	88, 247
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	2 cut(s)	33, 151
Bbv12I	GWGCWC	2 cut(s)	261, 273
BbvCI	CCTCAGC	1 cut(s)	353
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	3 cut(s)	76, 127, 166
BcgI	CGANNNNNNTGC	4 cut(s)	355, 389, 554, 588
BciT130I	CCWGG	2 cut(s)	215, 416
BcoDI	GTCTC	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	129
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	2 cut(s)	215, 416
BmeT110I	CYCGRG	1 cut(s)	542
BmgBI	CACGTC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	90, 249
BmrFI	CCNGG	2 cut(s)	215, 416
BmsI	GCATC	4 cut(s)	44, 174, 231, 322
BpiI	GAAGAC	2 cut(s)	33, 151
Bpu10I	CCTNAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	122
Bsa29I	ATCGAT	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	505
BsaHI	GRCGYC	2 cut(s)	89, 225
BsaI	GGTCTC	1 cut(s)	188
BsaJI	CCNNGG	5 cut(s)	9, 54, 84, 468, 543
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 403, 469
Bse118I	RCCGGY	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	215, 416
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	5 cut(s)	9, 54, 84, 468, 543
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	3 cut(s)	220, 403, 469
BseMII	CTCAG	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	26, 581
BseSI	GKGCMC	1 cut(s)	261
BsgI	GTGCAG	1 cut(s)	277
Bsh1236I	CGCG	4 cut(s)	182, 266, 399, 564
Bsh1285I	CGRYCG	2 cut(s)	9, 397
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	2 cut(s)	88, 247
BshVI	ATCGAT	1 cut(s)	285
BsiEI	CGRYCG	2 cut(s)	9, 397
BsiHKAI	GWGCWC	2 cut(s)	261, 273
BsiHKCI	CYCGRG	1 cut(s)	542
BsiSI	CCGG	1 cut(s)	245
BslI	CCNNNNNNNGG	3 cut(s)	220, 403, 469
BsmAI	GTCTC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	419
Bso31I	GGTCTC	1 cut(s)	188
BsoBI	CYCGRG	1 cut(s)	542
Bsp1286I	GDGCHC	2 cut(s)	261, 273
Bsp143I	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
Bsp68I	TCGCGA	2 cut(s)	182, 564
BspACI	CCGC	7 cut(s)	42, 78, 114, 266, 397, 420, 473
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	345
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	4 cut(s)	182, 266, 399, 564
BspLI	GGNNCC	2 cut(s)	90, 249
BspPI	GGATC	3 cut(s)	406, 483, 488
BspT107I	GGYRCC	2 cut(s)	88, 247
BspTNI	GGTCTC	1 cut(s)	188
BsrFI	RCCGGY	1 cut(s)	244
BssAI	RCCGGY	1 cut(s)	244
BssECI	CCNNGG	5 cut(s)	9, 54, 84, 468, 543
BssMI	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
BssNI	GRCGYC	2 cut(s)	89, 225
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	2 cut(s)	215, 416
Bst4CI	ACNGT	2 cut(s)	199, 469
BstACI	GRCGYC	2 cut(s)	89, 225
BstBAI	YACGTR	1 cut(s)	505
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	4 cut(s)	182, 266, 399, 564
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 266
BstKTI	GATC	7 cut(s)	132, 168, 282, 414, 442, 478, 483
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
BstMCI	CGRYCG	2 cut(s)	9, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 86, 256, 454, 528
BstNI	CCWGG	2 cut(s)	215, 416
BstSCI	CCNGG	2 cut(s)	213, 414
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	4 cut(s)	182, 266, 399, 564
BstV2I	GAAGAC	2 cut(s)	33, 151
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	419
BsuTUI	ATCGAT	1 cut(s)	285
BtgI	CCRYGG	1 cut(s)	468
BtgZI	GCGATG	1 cut(s)	197
BtrI	CACGTC	1 cut(s)	436
BtsCI	GGATG	1 cut(s)	35
BtuMI	TCGCGA	2 cut(s)	182, 564
CfoI	GCGC	2 cut(s)	91, 266
Cfr10I	RCCGGY	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	2 cut(s)	214, 484
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	7 cut(s)	74, 271, 352, 409, 419, 559, 581
CviKI_1	RGCY	7 cut(s)	74, 271, 352, 409, 419, 559, 581
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	353
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	7 cut(s)	131, 167, 281, 413, 441, 477, 482
DpnII	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
DrdI	GACNNNNNNGTC	3 cut(s)	155, 202, 224
DseDI	GACNNNNNNGTC	3 cut(s)	155, 202, 224
EaeI	YGGCCR	1 cut(s)	417
EciI	GGCGGA	3 cut(s)	31, 67, 488
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	213, 414
EcoRV	GATATC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	238
FaiI	YATR	2 cut(s)	236, 573
FalI	AAGNNNNNCTT	2 cut(s)	194, 226
FatI	CATG	1 cut(s)	234
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	2 cut(s)	5, 95
Fnu4HI	GCNGC	1 cut(s)	420
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	420
GlaI	GCGC	2 cut(s)	90, 265
GluI	GCNGC	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	92
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	245
HgaI	GACGC	2 cut(s)	214, 484
HhaI	GCGC	2 cut(s)	91, 266
Hin1I	GRCGYC	2 cut(s)	89, 225
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	2 cut(s)	89, 264
HinP1I	GCGC	2 cut(s)	89, 264
HincII	GTYRAC	2 cut(s)	6, 387
HindII	GTYRAC	2 cut(s)	6, 387
HindIII	AAGCTT	1 cut(s)	557
HinfI	GANTC	1 cut(s)	591
HpaI	GTTAAC	1 cut(s)	387
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	4 cut(s)	6, 96, 259, 387
Hpy188I	TCNGA	4 cut(s)	85, 148, 318, 480
Hpy188III	TCNNGA	7 cut(s)	139, 163, 181, 193, 274, 484, 563
Hpy8I	GTNNAC	4 cut(s)	6, 96, 259, 387
Hpy99I	CGWCG	7 cut(s)	103, 113, 152, 173, 230, 440, 500
HpyAV	CCTTC	2 cut(s)	340, 581
HpyCH4III	ACNGT	2 cut(s)	199, 469
HpyCH4IV	ACGT	3 cut(s)	255, 435, 504
HpyCH4V	TGCA	6 cut(s)	35, 187, 259, 294, 313, 433
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 86, 256, 454, 528
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	3 cut(s)	255, 435, 504
Hsp92I	GRCGYC	2 cut(s)	89, 225
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	2 cut(s)	89, 264
KasI	GGCGCC	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
LmnI	GCTCC	4 cut(s)	268, 325, 349, 406
LpnPI	CCDG	9 cut(s)	45, 200, 227, 258, 364, 401, 428, 434, 476
LweI	GCATC	4 cut(s)	44, 174, 231, 322
MaeII	ACGT	3 cut(s)	255, 435, 504
MalI	GATC	7 cut(s)	131, 167, 281, 413, 441, 477, 482
MboI	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
MboII	GAAGA	7 cut(s)	38, 136, 139, 151, 202, 289, 560
MflI	RGATCY	1 cut(s)	129
MhlI	GDGCHC	2 cut(s)	261, 273
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	1 cut(s)	600
MmeI	TCCRAC	1 cut(s)	171
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	239
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	215, 416
MvaI	CCWGG	2 cut(s)	215, 416
MvnI	CGCG	4 cut(s)	182, 266, 399, 564
MwoI	GCNNNNNNNGC	5 cut(s)	41, 86, 256, 454, 528
NarI	GGCGCC	1 cut(s)	89
NdeII	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	90, 249
NruI	TCGCGA	2 cut(s)	182, 564
PdmI	GAANNNNTTC	1 cut(s)	515
PflMI	CCANNNNNTGG	1 cut(s)	469
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	599
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	599
Ppu21I	YACGTR	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	213, 414
PspGI	CCWGG	2 cut(s)	213, 414
PspN4I	GGNNCC	2 cut(s)	90, 249
PsuI	RGATCY	1 cut(s)	129
RruI	TCGCGA	2 cut(s)	182, 564
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	7 cut(s)	129, 165, 279, 411, 439, 475, 480
SchI	GAGTC	1 cut(s)	600
ScrFI	CCNGG	2 cut(s)	215, 416
SduI	GDGCHC	2 cut(s)	261, 273
SetI	ASST	9 cut(s)	146, 159, 258, 273, 354, 411, 438, 507, 561
SfaNI	GCATC	4 cut(s)	44, 174, 231, 322
SfoI	GGCGCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SsiI	CCGC	7 cut(s)	42, 78, 114, 266, 397, 420, 473
SspDI	GGCGCC	1 cut(s)	88
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	2 cut(s)	213, 414
TaaI	ACNGT	2 cut(s)	199, 469
TaiI	ACGT	3 cut(s)	258, 438, 507
TaqI	TCGA	8 cut(s)	5, 162, 168, 192, 285, 438, 498, 594
TaqII	GACCGA	1 cut(s)	23
TauI	GCSGC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	1 cut(s)	116
Van91I	CCANNNNNTGG	1 cut(s)	469
VneI	GTGCAC	1 cut(s)	257
XmiI	GTMKAC	2 cut(s)	5, 95
XmnI	GAANNNNTTC	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.