FvH4_3g14720

Belongs to the SKP1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005907
Physical Location & Seq
Reverse (-)
9080978 .. 9082364
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14720.t1

Sequence Viewer

Length: 483 bp
ATGTCAGCTTCAGCAGAGAACGAGGCCTCCACCAAGCAAGAGAGCGGCCCCTCCGGCGCCGTCCAAGATGACCAGAAGAAGATCACGGTACGGACTGGAGATGGCGAGGTCTTTGAGTTGAACGAAGAGGTGGCAATGGAGATGGAAACCATCAAGACCTTTTACCAGGAGGACGATAAGTGTGAGACGGTTACCATGCCCTTGCCAAATGTGGAGAGATGGGAGTTGCAGAAAGTCATAGAGTACTGCAGCAAGTATCTCGAGCTCAAGAACAAGGAAGACTTCGACAGGAAACTCAAGGTCTTCCAGGCTGAGTTCATCAAGAGCTTGAGCCCTAAGTGTCTACTGTGCCTCGCCAACACGGCCAATTACTTGGACATCCAATATCTGCAAGACTTCATCTACTTCACTGAGGAGGAGTATGAGGCTGCTAAGGCAGAGGCTCCTTGGGCTCATGAAAACCTTGATAAGGATTGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200
Pfam Domains
Protein Families
Skp1 Skp1_POZ

Protein Analysis

161

Amino Acids

18.62

Weight (kDa)

4.43

Isoelectric Point (pI)

44.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Skp1_POZ PF03931 26 - 87 2.3e-12 Skp1 family, tetramerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 45
AccI GTMKAC 1 cut(s) 343
AciI CCGC 1 cut(s) 45
AcoI YGGCCR 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 3 cut(s) 90, 245, 479
AfiI CCNNNNNNNGG 1 cut(s) 469
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 2 cut(s) 165, 306
AloI GAACNNNNNNTCC 2 cut(s) 11, 43
AluBI AGCT 3 cut(s) 8, 265, 327
AluI AGCT 3 cut(s) 8, 265, 327
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 179
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 3 cut(s) 24, 46, 363
ApeKI GCWGC 2 cut(s) 249, 428
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 260
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 3 cut(s) 267, 335, 454
BbsI GAAGAC 2 cut(s) 285, 295
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 2 cut(s) 261, 415
BccI CCATC 4 cut(s) 95, 136, 158, 213
BceAI ACGGC 2 cut(s) 44, 378
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 2 cut(s) 167, 308
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 247
BfoI RGCGCY 1 cut(s) 60
BglI GCCNNNNNGGC 2 cut(s) 54, 362
BisI GCNGC 3 cut(s) 46, 250, 429
BlsI GCNGC 3 cut(s) 47, 251, 430
BmcAI AGTACT 1 cut(s) 245
Bme1390I CCNGG 2 cut(s) 167, 308
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 3 cut(s) 49, 58, 444
BmrFI CCNGG 2 cut(s) 167, 308
BpiI GAAGAC 2 cut(s) 285, 295
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 432
BpuEI CTTGAG 3 cut(s) 251, 281, 349
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 446
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 141
BseBI CCWGG 2 cut(s) 167, 308
BseDI CCNNGG 1 cut(s) 446
BseGI GGATG 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 303, 402
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 428, 431
BseXI GCAGC 2 cut(s) 261, 415
BshFI GGCC 3 cut(s) 26, 48, 365
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 469
BsmAI GTCTC 1 cut(s) 179
BsmBI CGTCTC 1 cut(s) 179
BsnI GGCC 3 cut(s) 26, 48, 365
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 3 cut(s) 267, 335, 454
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 1 cut(s) 45
BspANI GGCC 3 cut(s) 26, 48, 365
BspCNI CTCAG 2 cut(s) 304, 403
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 3 cut(s) 49, 58, 444
BspMAI CTGCAG 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 141
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 446
BssMI GATC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 167, 308
Bst4CI ACNGT 3 cut(s) 88, 190, 348
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 57
BstDEI CTNAG 4 cut(s) 312, 336, 411, 432
BstEII GGTNACC 1 cut(s) 190
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 1 cut(s) 378
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 1 cut(s) 81
BstMWI GCNNNNNNNGC 4 cut(s) 54, 362, 434, 449
BstNI CCWGG 2 cut(s) 167, 308
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 2 cut(s) 165, 306
BstSFI CTRYAG 1 cut(s) 247
BstV1I GCAGC 2 cut(s) 261, 415
BstV2I GAAGAC 2 cut(s) 285, 295
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuRI GGCC 3 cut(s) 26, 48, 365
BtsCI GGATG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 408
CciI TCATGA 1 cut(s) 454
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 3 cut(s) 89, 244, 478
CviAII CATG 2 cut(s) 196, 455
CviQI GTAC 3 cut(s) 89, 244, 478
DdeI CTNAG 4 cut(s) 312, 336, 411, 432
DinI GGCGCC 1 cut(s) 58
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 446
Eco147I AGGCCT 1 cut(s) 26
Eco24I GRGCYC 3 cut(s) 267, 335, 454
Eco53kI GAGCTC 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 260
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 165, 306
EcoT14I CCWWGG 1 cut(s) 446
EcoT38I GRGCYC 3 cut(s) 267, 335, 454
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 446
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 2 cut(s) 199, 458
FaiI YATR 4 cut(s) 197, 239, 423, 456
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 195, 454
FblI GTMKAC 1 cut(s) 343
Fnu4HI GCNGC 3 cut(s) 46, 250, 429
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 3 cut(s) 267, 335, 454
Fsp4HI GCNGC 3 cut(s) 46, 250, 429
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 46, 250, 429
GsuI CTGGAG 1 cut(s) 117
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 3 cut(s) 26, 48, 365
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 2 cut(s) 199, 458
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 1 cut(s) 344
Hpy188III TCNNGA 5 cut(s) 154, 260, 268, 322, 455
Hpy8I GTNNAC 1 cut(s) 344
HpyCH4III ACNGT 3 cut(s) 88, 190, 348
HpyCH4V TGCA 3 cut(s) 229, 249, 391
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 362, 434, 449
HpyF3I CTNAG 4 cut(s) 312, 336, 411, 432
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 2 cut(s) 199, 458
HspAI GCGC 1 cut(s) 57
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 8 cut(s) 67, 81, 86, 152, 179, 274, 293, 320
Lsp1109I GCAGC 2 cut(s) 261, 415
MaeIII GTNAC 1 cut(s) 190
MalI GATC 1 cut(s) 83
MbiI CCGCTC 1 cut(s) 45
MboI GATC 1 cut(s) 81
MboII GAAGA 5 cut(s) 88, 91, 137, 290, 295
MhlI GDGCHC 3 cut(s) 267, 335, 454
MluCI AATT 1 cut(s) 367
Mly113I GGCGCC 1 cut(s) 57
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 167, 308
MvaI CCWGG 2 cut(s) 167, 308
MwoI GCNNNNNNNGC 4 cut(s) 54, 362, 434, 449
NarI GGCGCC 1 cut(s) 57
NdeII GATC 1 cut(s) 81
NlaIII CATG 2 cut(s) 199, 458
NlaIV GGNNCC 3 cut(s) 49, 58, 444
PaeR7I CTCGAG 1 cut(s) 260
PagI TCATGA 1 cut(s) 454
PceI AGGCCT 1 cut(s) 26
PkrI GCNGC 3 cut(s) 47, 251, 430
PluTI GGCGCC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 165, 306
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 165, 306
PspN4I GGNNCC 3 cut(s) 49, 58, 444
PspPI GGNCC 1 cut(s) 47
PstI CTGCAG 1 cut(s) 251
RsaI GTAC 3 cut(s) 90, 245, 479
RsaNI GTAC 3 cut(s) 89, 244, 478
SacI GAGCTC 1 cut(s) 267
SatI GCNGC 3 cut(s) 46, 250, 429
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 245
ScrFI CCNGG 2 cut(s) 167, 308
SduI GDGCHC 3 cut(s) 267, 335, 454
SetI ASST 8 cut(s) 10, 111, 132, 161, 267, 303, 329, 465
SfcI CTRYAG 1 cut(s) 247
SfoI GGCGCC 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 4 cut(s) 260, 266, 296, 328
SmoI CTYRAG 4 cut(s) 260, 266, 296, 328
Sse9I AATT 1 cut(s) 367
SseBI AGGCCT 1 cut(s) 26
SsiI CCGC 1 cut(s) 45
SspDI GGCGCC 1 cut(s) 56
SstI GAGCTC 1 cut(s) 267
StuI AGGCCT 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 165, 306
StyI CCWWGG 1 cut(s) 446
TaaI ACNGT 3 cut(s) 88, 190, 348
TaqI TCGA 2 cut(s) 261, 285
TasI AATT 1 cut(s) 367
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 48
TscAI CASTG 1 cut(s) 415
TseI GCWGC 2 cut(s) 249, 428
TspDTI ATGAA 3 cut(s) 307, 388, 471
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 415
XagI CCTNNNNNAGG 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 343
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.