Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005907

Physical Location & Seq

Genomic Coordinates Reverse (-)

9083307 .. 9083825

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g14730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCGACCGAGGAAGACACCGTCCAAGAAAAGAAGACGATCTCCCTGAAGACCTCCGACGACGAGGTCTTCGAATTGGAGGAGAACGTGGCAATGGAGTTCGGAACCGTCAAGGCCTTCTTCGGAGACGATGGGGTCTCCCGAGACATGGTGATGCCTATACCTAACGTGCACAGCAAGGAACTGACGAGAATCATTGACTTCTGCACCAAGCACCTCGCATTGAAGCCGAAAGCTGATCACGACGAGGCCGGGAAGAAGGAGCTGAGGAAGTTCTATGCTGAGTACGTGAAGGAAGACACCACCGAGCGCATAATGGAGCTCATACTGGCTGCGGATTACTTGAATGTGAATGACTTTCTGGACTTGTTGAACCAGTCGGTGGCGGACCGGATCAAGAACAAGAGTGTGGAGTATGTCAGGAAGTTTTTTGGGATTGAGAGTGATTTTACTCCCGAGGAGGAGGCGGAGCTCCGGCAGCAGTATGCCTGGGCTTTTGAGGGGGTTGATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

173

Amino Acids

19.91

Weight (kDa)

4.53

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	13 - 73	3.8e-14	Skp1 family, tetramerisation domain
Skp1	PF01466	121 - 165	1.6e-19	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14710 FvH4_3g14720 FvH4_3g14730
malus_domestica	MD02G1116700.v1.1 MD08G1210300.v1.1 MD10G1208900.v1.1
prunus_persica	Prupe.4G132400_v2.0.a1
pyrus_communis	pycom08g18130 pycom10g17770
rosa_chinensis	RchiOBHm_Chr5g0024221 RchiOBHm_Chr5g0024251
rosa_laevigata	RLG00000032781 RLG00000032787
rosa_multiflora	Rmu_sc0009993.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055030 Rroxscaffold_1G00055730
rosa_rugosa	Rorug05G0082600 Rorug05G0082800
rosa_samantha	Rh5AG173200 Rh5BG170000 Rh5BG170100 Rh5CG185800 Rh5CG186200 Rh5DG172300 Rh5DG172700
rosa_wichuraiana	Rw0G000840 Rw5G015630 Rw5G015640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	65, 134
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	335, 386, 467
AclWI	GGATC	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	68
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	148, 382
AgsI	TTSAA	3 cut(s)	226, 346, 373
AjnI	CCWGG	1 cut(s)	488
AluBI	AGCT	4 cut(s)	236, 265, 322, 472
AluI	AGCT	4 cut(s)	236, 265, 322, 472
Alw21I	GWGCWC	3 cut(s)	174, 324, 474
Alw26I	GTCTC	3 cut(s)	120, 138, 142
Alw44I	GTGCAC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	401
Ama87I	CYCGRG	2 cut(s)	141, 455
AoxI	GGCC	2 cut(s)	114, 249
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	332, 478
ArsI	GACNNNNNNTTYG	2 cut(s)	53, 85
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	163
AsuII	TTCGAA	1 cut(s)	72
AvaI	CYCGRG	2 cut(s)	141, 455
AvaII	GGWCC	1 cut(s)	388
BaeGI	GKGCMC	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	324, 474
BbsI	GAAGAC	5 cut(s)	21, 41, 56, 61, 303
Bbv12I	GWGCWC	3 cut(s)	174, 324, 474
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	319, 490
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	1 cut(s)	490
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	3 cut(s)	120, 138, 142
BisI	GCNGC	2 cut(s)	333, 479
BlsI	GCNGC	2 cut(s)	334, 480
Bme1390I	CCNGG	2 cut(s)	253, 490
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	2 cut(s)	141, 455
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	253, 490
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	5 cut(s)	21, 41, 56, 61, 303
Bpu10I	CCTNAGC	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	72
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	289
BsaI	GGTCTC	1 cut(s)	142
BsaJI	CCNNGG	3 cut(s)	9, 456, 489
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 382
Bse1I	ACTGG	2 cut(s)	333, 376
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	9, 456, 489
BseLI	CCNNNNNNNGG	2 cut(s)	148, 382
BseMI	GCAATG	1 cut(s)	99
BseMII	CTCAG	2 cut(s)	257, 273
BseNI	ACTGG	2 cut(s)	333, 376
BseRI	GAGGAG	3 cut(s)	95, 473, 476
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	319, 490
BsgI	GTGCAG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	116, 251
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	3 cut(s)	174, 324, 474
BsiHKCI	CYCGRG	2 cut(s)	141, 455
BsiSI	CCGG	3 cut(s)	252, 391, 475
BslI	CCNNNNNNNGG	2 cut(s)	148, 382
BsmAI	GTCTC	3 cut(s)	120, 138, 142
BsmBI	CGTCTC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	116, 251
Bso31I	GGTCTC	1 cut(s)	142
BsoBI	CYCGRG	2 cut(s)	141, 455
Bsp119I	TTCGAA	1 cut(s)	72
Bsp1286I	GDGCHC	3 cut(s)	174, 324, 474
Bsp143I	GATC	3 cut(s)	39, 238, 393
BspACI	CCGC	3 cut(s)	335, 386, 467
BspANI	GGCC	2 cut(s)	116, 251
BspCNI	CTCAG	2 cut(s)	258, 274
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	401
BspT104I	TTCGAA	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	99
BsrI	ACTGG	2 cut(s)	333, 376
BssECI	CCNNGG	3 cut(s)	9, 456, 489
BssMI	GATC	3 cut(s)	39, 238, 393
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	22, 109
BstBAI	YACGTR	1 cut(s)	289
BstBI	TTCGAA	1 cut(s)	72
BstDEI	CTNAG	2 cut(s)	266, 282
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	3 cut(s)	42, 241, 396
BstMAI	GTCTC	3 cut(s)	120, 138, 142
BstMBI	GATC	3 cut(s)	39, 238, 393
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	251, 488
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	319, 490
BstV2I	GAAGAC	5 cut(s)	21, 41, 56, 61, 303
BsuRI	GGCC	2 cut(s)	116, 251
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	388
CpoI	CGGWCCG	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	286
CspI	CGGWCCG	1 cut(s)	388
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	9 cut(s)	116, 229, 236, 251, 265, 322, 332, 472, 494
CviKI_1	RGCY	9 cut(s)	116, 229, 236, 251, 265, 322, 332, 472, 494
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	266, 282
DpnI	GATC	3 cut(s)	41, 240, 395
DpnII	GATC	3 cut(s)	39, 238, 393
DrdI	GACNNNNNNGTC	2 cut(s)	65, 134
DseDI	GACNNNNNNGTC	2 cut(s)	65, 134
EciI	GGCGGA	2 cut(s)	401, 482
Ecl136II	GAGCTC	2 cut(s)	322, 472
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	324, 474
Eco31I	GGTCTC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	388
Eco53kI	GAGCTC	2 cut(s)	322, 472
Eco57I	CTGAAG	1 cut(s)	68
Eco88I	CYCGRG	2 cut(s)	141, 455
EcoICRI	GAGCTC	2 cut(s)	322, 472
EcoRII	CCWGG	1 cut(s)	488
EcoT38I	GRGCYC	2 cut(s)	324, 474
Esp3I	CGTCTC	1 cut(s)	120
FaeI	CATG	1 cut(s)	151
FaiI	YATR	7 cut(s)	149, 161, 279, 314, 326, 417, 486
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	1 cut(s)	147
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	333, 479
FriOI	GRGCYC	2 cut(s)	324, 474
Fsp4HI	GCNGC	2 cut(s)	333, 479
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	2 cut(s)	333, 479
HaeIII	GGCC	2 cut(s)	116, 251
HapII	CCGG	3 cut(s)	252, 391, 475
HhaI	GCGC	1 cut(s)	312
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	3 cut(s)	252, 391, 475
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	2 cut(s)	6, 172
Hpy188I	TCNGA	3 cut(s)	58, 104, 125
Hpy188III	TCNNGA	6 cut(s)	141, 242, 362, 397, 421, 455
Hpy8I	GTNNAC	2 cut(s)	6, 172
Hpy99I	CGWCG	3 cut(s)	62, 65, 248
HpyAV	CCTTC	3 cut(s)	127, 253, 286
HpyCH4III	ACNGT	2 cut(s)	22, 109
HpyCH4IV	ACGT	3 cut(s)	87, 168, 288
HpyCH4V	TGCA	2 cut(s)	172, 207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	2 cut(s)	266, 282
HpySE526I	ACGT	3 cut(s)	87, 168, 288
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	39, 238, 393
LmnI	GCTCC	4 cut(s)	262, 319, 469, 477
Lsp1109I	GCAGC	2 cut(s)	319, 490
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	3 cut(s)	87, 168, 288
MalI	GATC	3 cut(s)	41, 240, 395
MboI	GATC	3 cut(s)	39, 238, 393
MboII	GAAGA	7 cut(s)	26, 46, 61, 61, 112, 268, 308
MhlI	GDGCHC	3 cut(s)	174, 324, 474
MluCI	AATT	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	152
MspI	CCGG	3 cut(s)	252, 391, 475
MspR9I	CCNGG	2 cut(s)	253, 490
MvaI	CCWGG	1 cut(s)	490
MwoI	GCNNNNNNNGC	1 cut(s)	478
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	3 cut(s)	39, 238, 393
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	106
NspV	TTCGAA	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	192
PflFI	GACNNNGTC	2 cut(s)	20, 65
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	2 cut(s)	334, 480
Ppu21I	YACGTR	1 cut(s)	289
Psp124BI	GAGCTC	2 cut(s)	324, 474
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	388
PsyI	GACNNNGTC	2 cut(s)	20, 65
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	152
Rsr2I	CGGWCCG	1 cut(s)	388
RsrII	CGGWCCG	1 cut(s)	388
SacI	GAGCTC	2 cut(s)	324, 474
SalI	GTCGAC	1 cut(s)	4
SatI	GCNGC	2 cut(s)	333, 479
Sau3AI	GATC	3 cut(s)	39, 238, 393
Sau96I	GGNCC	1 cut(s)	388
ScrFI	CCNGG	2 cut(s)	253, 490
SduI	GDGCHC	3 cut(s)	174, 324, 474
SfaNI	GCATC	1 cut(s)	144
SfuI	TTCGAA	1 cut(s)	72
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	74
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	3 cut(s)	335, 386, 467
SstI	GAGCTC	2 cut(s)	324, 474
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	251, 488
TaaI	ACNGT	2 cut(s)	22, 109
TaiI	ACGT	3 cut(s)	90, 171, 291
TaqI	TCGA	2 cut(s)	5, 72
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	192
TseI	GCWGC	2 cut(s)	332, 478
Tth111I	GACNNNGTC	2 cut(s)	20, 65
Van91I	CCANNNNNTGG	1 cut(s)	382
VneI	GTGCAC	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.