Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009993.1

Orthogroup ID

OG0005907

Physical Location & Seq

Genomic Coordinates Reverse (-)

11844 .. 12399

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009993.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 556 bp

tatgtcgacttcagccgacaacaaggccgccatcactcaagagagcggcccctccgccgccgtccaagacaaccagaagaacatcgtggtaaggaccgcagacggcgaggtcttcaatttgaaggaagaggtggcaatggagatagatatcatcaagaccttcttccaggaggacagtatttcttacgagacggtgatgcccttacccaacgtggagggctgggagatggtgaaggtcatagagtactgcaccaagcatgttgaactcaaacacaaggtcgacggttacaaggaactcaaggccttccaggccttgttcgtccagaacctgagcacaaagagcctattggctctcaccaacacggccaattacttggaagttaaatatcttcttgagtttctctgtcaagccgtctcggagcagattaagaataaggatgtcgactatgtgagggagctgttcggagtggagaatgacttcaatgatgaggagtatgagcaggtcaaggcagaggctccttgggctcatgaaaaccttaataatgacctgcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

184

Amino Acids

21.02

Weight (kDa)

4.57

Isoelectric Point (pI)

30.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14710 FvH4_3g14720 FvH4_3g14730
malus_domestica	MD02G1116700.v1.1 MD08G1210300.v1.1 MD10G1208900.v1.1
prunus_persica	Prupe.4G132400_v2.0.a1
pyrus_communis	pycom08g18130 pycom10g17770
rosa_chinensis	RchiOBHm_Chr5g0024221 RchiOBHm_Chr5g0024251
rosa_laevigata	RLG00000032781 RLG00000032787
rosa_multiflora	Rmu_sc0009993.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055030 Rroxscaffold_1G00055730
rosa_rugosa	Rorug05G0082600 Rorug05G0082800
rosa_samantha	Rh5AG173200 Rh5BG170000 Rh5BG170100 Rh5CG185800 Rh5CG186200 Rh5DG172300 Rh5DG172700
rosa_wichuraiana	Rw0G000840 Rw5G015630 Rw5G015640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	108
Acc36I	ACCTGC	1 cut(s)	491
AccBSI	CCGCTC	1 cut(s)	46
AccI	GTMKAC	3 cut(s)	6, 280, 442
AciI	CCGC	5 cut(s)	28, 46, 55, 58, 97
AcoI	YGGCCR	1 cut(s)	364
AfaI	GTAC	1 cut(s)	246
AgsI	TTSAA	4 cut(s)	116, 122, 264, 482
AjnI	CCWGG	2 cut(s)	166, 307
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	183, 419
AlwNI	CAGNNNCTG	1 cut(s)	329
AoxI	GGCC	5 cut(s)	25, 47, 301, 310, 364
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	2 cut(s)	48, 94
AsuHPI	GGTGA	3 cut(s)	206, 242, 347
AvaII	GGWCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	336
BccI	CCATC	2 cut(s)	39, 221
BceAI	ACGGC	4 cut(s)	45, 119, 379, 396
BciT130I	CCWGG	2 cut(s)	168, 309
BcoDI	GTCTC	2 cut(s)	183, 419
BfuAI	ACCTGC	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	3 cut(s)	28, 47, 58
BlsI	GCNGC	3 cut(s)	29, 48, 59
BmcAI	AGTACT	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	168, 309
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	48, 94
BmiI	GGNNCC	2 cut(s)	50, 517
BmrFI	CCNGG	2 cut(s)	168, 309
BmsI	GCATC	1 cut(s)	187
BpiI	GAAGAC	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	3 cut(s)	22, 282, 414
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	519
Bse3DI	GCAATG	1 cut(s)	142
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	168, 309
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	147
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	504
BseYI	CCCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	233
BshFI	GGCC	5 cut(s)	27, 49, 303, 312, 366
BsiHKAI	GWGCWC	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	183, 419
BsmBI	CGTCTC	2 cut(s)	183, 419
BsnI	GGCC	5 cut(s)	27, 49, 303, 312, 366
Bsp1286I	GDGCHC	2 cut(s)	336, 527
BspACI	CCGC	5 cut(s)	28, 46, 55, 58, 97
BspANI	GGCC	5 cut(s)	27, 49, 303, 312, 366
BspCNI	CTCAG	1 cut(s)	322
BspHI	TCATGA	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	50, 517
BspMI	ACCTGC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	2 cut(s)	168, 309
Bst4CI	ACNGT	3 cut(s)	177, 194, 285
Bst6I	CTCTTC	1 cut(s)	121
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	443
BstMAI	GTCTC	2 cut(s)	183, 419
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 340, 522
BstNI	CCWGG	2 cut(s)	168, 309
BstNSI	RCATGY	1 cut(s)	261
BstSCI	CCNGG	2 cut(s)	166, 307
BstV2I	GAAGAC	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	374
BsuRI	GGCC	5 cut(s)	27, 49, 303, 312, 366
BtsCI	GGATG	1 cut(s)	443
BveI	ACCTGC	1 cut(s)	491
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	527
Cfr13I	GGNCC	2 cut(s)	48, 94
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	2 cut(s)	258, 528
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	330
DrdI	GACNNNNNNGTC	1 cut(s)	108
DseDI	GACNNNNNNGTC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	519
Eco147I	AGGCCT	2 cut(s)	303, 312
Eco24I	GRGCYC	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	166, 307
EcoRV	GATATC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	519
Esp3I	CGTCTC	2 cut(s)	183, 419
FaeI	CATG	2 cut(s)	261, 531
FaiI	YATR	6 cut(s)	3, 240, 259, 448, 496, 529
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FatI	CATG	2 cut(s)	257, 527
FblI	GTMKAC	3 cut(s)	6, 280, 442
Fnu4HI	GCNGC	3 cut(s)	28, 47, 58
FokI	GGATG	1 cut(s)	450
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	3 cut(s)	28, 47, 58
GluI	GCNGC	3 cut(s)	28, 47, 58
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	5 cut(s)	27, 49, 303, 312, 366
Hin1II	CATG	2 cut(s)	261, 531
HincII	GTYRAC	3 cut(s)	7, 281, 443
HindII	GTYRAC	3 cut(s)	7, 281, 443
HphI	GGTGA	3 cut(s)	206, 242, 347
Hpy166II	GTNNAC	3 cut(s)	7, 281, 443
Hpy188I	TCNGA	2 cut(s)	419, 465
Hpy188III	TCNNGA	5 cut(s)	39, 155, 323, 393, 528
Hpy8I	GTNNAC	3 cut(s)	7, 281, 443
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	4 cut(s)	116, 170, 227, 314
HpyCH4III	ACNGT	3 cut(s)	177, 194, 285
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	250, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 340, 522
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	2 cut(s)	261, 531
LmnI	GCTCC	3 cut(s)	419, 455, 521
LpnPI	CCDG	9 cut(s)	87, 153, 180, 206, 294, 321, 336, 342, 486
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	285
MbiI	CCGCTC	1 cut(s)	46
MboII	GAAGA	5 cut(s)	89, 104, 138, 155, 381
MhlI	GDGCHC	2 cut(s)	336, 527
MluCI	AATT	2 cut(s)	116, 368
MnlI	CCTC	8 cut(s)	62, 101, 122, 164, 209, 445, 482, 506
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	4 cut(s)	382, 427, 538, 554
MspR9I	CCNGG	2 cut(s)	168, 309
MvaI	CCWGG	2 cut(s)	168, 309
MwoI	GCNNNNNNNGC	3 cut(s)	309, 340, 522
NlaIII	CATG	2 cut(s)	261, 531
NlaIV	GGNNCC	2 cut(s)	50, 517
NspI	RCATGY	1 cut(s)	261
PagI	TCATGA	1 cut(s)	527
PceI	AGGCCT	2 cut(s)	303, 312
PdmI	GAANNNNTTC	1 cut(s)	477
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	3 cut(s)	29, 48, 59
Psp6I	CCWGG	2 cut(s)	166, 307
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	2 cut(s)	166, 307
PspN4I	GGNNCC	2 cut(s)	50, 517
PspPI	GGNCC	2 cut(s)	48, 94
PstNI	CAGNNNCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SalI	GTCGAC	3 cut(s)	5, 279, 441
SaqAI	TTAA	4 cut(s)	382, 427, 538, 554
SatI	GCNGC	3 cut(s)	28, 47, 58
Sau96I	GGNCC	2 cut(s)	48, 94
ScaI	AGTACT	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	168, 309
SduI	GDGCHC	2 cut(s)	336, 527
SfaNI	GCATC	1 cut(s)	187
SfiI	GGCCNNNNNGGCC	1 cut(s)	309
SinI	GGWCC	1 cut(s)	94
SmlI	CTYRAG	3 cut(s)	37, 297, 393
SmoI	CTYRAG	3 cut(s)	37, 297, 393
Sse9I	AATT	2 cut(s)	116, 368
SseBI	AGGCCT	2 cut(s)	303, 312
SsiI	CCGC	5 cut(s)	28, 46, 55, 58, 97
StuI	AGGCCT	2 cut(s)	303, 312
StyD4I	CCNGG	2 cut(s)	166, 307
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	3 cut(s)	177, 194, 285
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	3 cut(s)	6, 280, 442
TasI	AATT	2 cut(s)	116, 368
TatI	WGTACW	1 cut(s)	244
TauI	GCSGC	3 cut(s)	30, 49, 60
Tru1I	TTAA	4 cut(s)	382, 427, 538, 554
Tru9I	TTAA	4 cut(s)	382, 427, 538, 554
TspDTI	ATGAA	1 cut(s)	544
VpaK11BI	GGWCC	1 cut(s)	94
XceI	RCATGY	1 cut(s)	261
XmiI	GTMKAC	3 cut(s)	6, 280, 442
XmnI	GAANNNNTTC	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.