Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005907

Physical Location & Seq

Genomic Coordinates Reverse (-)

30812718 .. 30813341

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1208900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGTCGACCGAGGAGAAGAAGATTGAAGACCCCGCCTCCTCCGCCTCTGCCACCGAGGAAAACAAGAGTGAAGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGAGGCGCCGTCTACGACGGAAAACGACGGCGCGGAAAAGAAGAAGATCTCCCTCAAGACCTCCGACGGCGAGGTCTTCGAGATCGACGGGGATATCGCGATGCAGTTCCAGACCGTCAAGTCGTTCTTCCAGGACGAGGGCGTCGGCGACATGGTGATGCCGTTGCCGAACGTGCACAGCGCGGAGCTCGTGAACATCATCGATTTCTGCACCAAAACCCAACATCTGCATCGGAAAGTGGAGCACGATGAGGCGTGGAGGAAGGAGCTGAGGAAAATCAGCACCGATTTCGTCAGGGAGTTAACAACCGACCGCGTGATGGAGCTGATCCTGGCCGCCGACTTCTTGCACGTCGATCTATTGCTGGAAGTGCTGAACCAGACCGTGGCGGATCGGATCAAGAACAAGAGCGTCGAGCACGTGAGGAAGTTGTTCGGCGTCGAGAGCGATTACACGCCCGAGGAAGAACAGAAGCTTCGCGAGGAGTATGCTTGGGCTTTTGAAGGAGTCGATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

208

Amino Acids

23.3

Weight (kDa)

4.62

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	48 - 107	2.2e-12	Skp1 family, tetramerisation domain
Skp1	PF01466	155 - 200	2.5e-19	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14710 FvH4_3g14720 FvH4_3g14730
malus_domestica	MD02G1116700.v1.1 MD08G1210300.v1.1 MD10G1208900.v1.1
prunus_persica	Prupe.4G132400_v2.0.a1
pyrus_communis	pycom08g18130 pycom10g17770
rosa_chinensis	RchiOBHm_Chr5g0024221 RchiOBHm_Chr5g0024251
rosa_laevigata	RLG00000032781 RLG00000032787
rosa_multiflora	Rmu_sc0009993.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055030 Rroxscaffold_1G00055730
rosa_rugosa	Rorug05G0082600 Rorug05G0082800
rosa_samantha	Rh5AG173200 Rh5BG170000 Rh5BG170100 Rh5CG185800 Rh5CG186200 Rh5DG172300 Rh5DG172700
rosa_wichuraiana	Rw0G000840 Rw5G015630 Rw5G015640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	173, 220, 242
AccB1I	GGYRCC	1 cut(s)	106
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccI	GTMKAC	2 cut(s)	5, 113
AccII	CGCG	5 cut(s)	134, 200, 284, 417, 582
AclWI	GGATC	3 cut(s)	424, 501, 506
AcoI	YGGCCR	1 cut(s)	435
AcvI	CACGTG	1 cut(s)	523
AcyI	GRCGYC	3 cut(s)	107, 243, 540
AfiI	CCNNNNNNNGG	3 cut(s)	238, 421, 487
AgsI	TTSAA	2 cut(s)	26, 605
AjiI	CACGTC	1 cut(s)	454
AjnI	CCWGG	2 cut(s)	231, 432
AluBI	AGCT	4 cut(s)	289, 370, 427, 577
AluI	AGCT	4 cut(s)	289, 370, 427, 577
Alw21I	GWGCWC	4 cut(s)	279, 291, 348, 522
Alw44I	GTGCAC	1 cut(s)	275
AlwI	GGATC	3 cut(s)	424, 501, 506
Ama87I	CYCGRG	1 cut(s)	560
AoxI	GGCC	1 cut(s)	435
ApaLI	GTGCAC	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	533
AspLEI	GCGC	3 cut(s)	109, 134, 284
AsuHPI	GGTGA	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	290
BbrPI	CACGTG	1 cut(s)	523
BbsI	GAAGAC	2 cut(s)	33, 169
Bbv12I	GWGCWC	4 cut(s)	279, 291, 348, 522
BbvCI	CCTCAGC	1 cut(s)	371
BccI	CCATC	1 cut(s)	415
BceAI	ACGGC	4 cut(s)	94, 145, 184, 247
BcgI	CGANNNNNNTGC	4 cut(s)	373, 407, 572, 606
BciT130I	CCWGG	2 cut(s)	233, 434
BfoI	RGCGCY	1 cut(s)	110
BglI	GCCNNNNNGGC	1 cut(s)	104
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	1 cut(s)	438
BlsI	GCNGC	1 cut(s)	439
Bme1390I	CCNGG	2 cut(s)	233, 434
BmeT110I	CYCGRG	1 cut(s)	560
BmgBI	CACGTC	1 cut(s)	454
BmiI	GGNNCC	1 cut(s)	108
BmrFI	CCNGG	2 cut(s)	233, 434
BmsI	GCATC	3 cut(s)	192, 249, 340
BpiI	GAAGAC	2 cut(s)	33, 169
Bpu10I	CCTNAGC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	523
BsaHI	GRCGYC	3 cut(s)	107, 243, 540
BsaJI	CCNNGG	5 cut(s)	9, 54, 102, 486, 561
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 421, 487
BseBI	CCWGG	2 cut(s)	233, 434
BseCI	ATCGAT	1 cut(s)	303
BseDI	CCNNGG	5 cut(s)	9, 54, 102, 486, 561
BseLI	CCNNNNNNNGG	3 cut(s)	238, 421, 487
BseMII	CTCAG	1 cut(s)	362
BseRI	GAGGAG	3 cut(s)	26, 28, 599
BseSI	GKGCMC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	5 cut(s)	134, 200, 284, 417, 582
Bsh1285I	CGRYCG	2 cut(s)	9, 415
BshFI	GGCC	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	106
BshVI	ATCGAT	1 cut(s)	303
BsiEI	CGRYCG	2 cut(s)	9, 415
BsiHKAI	GWGCWC	4 cut(s)	279, 291, 348, 522
BsiHKCI	CYCGRG	1 cut(s)	560
BslI	CCNNNNNNNGG	3 cut(s)	238, 421, 487
BsnI	GGCC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	560
Bsp1286I	GDGCHC	4 cut(s)	279, 291, 348, 522
Bsp143I	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
Bsp68I	TCGCGA	2 cut(s)	200, 582
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	1 cut(s)	363
BspDI	ATCGAT	1 cut(s)	303
BspFNI	CGCG	5 cut(s)	134, 200, 284, 417, 582
BspLI	GGNNCC	1 cut(s)	108
BspPI	GGATC	3 cut(s)	424, 501, 506
BspT107I	GGYRCC	1 cut(s)	106
BssECI	CCNNGG	5 cut(s)	9, 54, 102, 486, 561
BssMI	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
BssNI	GRCGYC	3 cut(s)	107, 243, 540
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	233, 434
Bst4CI	ACNGT	2 cut(s)	217, 487
BstACI	GRCGYC	3 cut(s)	107, 243, 540
BstBAI	YACGTR	1 cut(s)	523
BstDEI	CTNAG	1 cut(s)	371
BstDSI	CCRYGG	1 cut(s)	486
BstFNI	CGCG	5 cut(s)	134, 200, 284, 417, 582
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	3 cut(s)	109, 134, 284
BstKTI	GATC	6 cut(s)	150, 186, 432, 460, 496, 501
BstMBI	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
BstMCI	CGRYCG	2 cut(s)	9, 415
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 104, 274, 472, 546
BstNI	CCWGG	2 cut(s)	233, 434
BstSCI	CCNGG	2 cut(s)	231, 432
BstSLI	GKGCMC	1 cut(s)	279
BstUI	CGCG	5 cut(s)	134, 200, 284, 417, 582
BstV2I	GAAGAC	2 cut(s)	33, 169
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
Bsu15I	ATCGAT	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	437
BsuTUI	ATCGAT	1 cut(s)	303
BtgI	CCRYGG	1 cut(s)	486
BtgZI	GCGATG	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	454
BtuMI	TCGCGA	2 cut(s)	200, 582
CfoI	GCGC	3 cut(s)	109, 134, 284
ClaI	ATCGAT	1 cut(s)	303
CseI	GACGC	3 cut(s)	232, 502, 529
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	7 cut(s)	74, 289, 370, 427, 437, 577, 599
CviKI_1	RGCY	7 cut(s)	74, 289, 370, 427, 437, 577, 599
DdeI	CTNAG	1 cut(s)	371
DinI	GGCGCC	1 cut(s)	108
DpnI	GATC	6 cut(s)	149, 185, 431, 459, 495, 500
DpnII	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
DrdI	GACNNNNNNGTC	3 cut(s)	173, 220, 242
DseDI	GACNNNNNNGTC	3 cut(s)	173, 220, 242
EaeI	YGGCCR	1 cut(s)	435
EciI	GGCGGA	6 cut(s)	31, 67, 73, 79, 85, 506
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco32I	GATATC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	289
Eco72I	CACGTG	1 cut(s)	523
Eco88I	CYCGRG	1 cut(s)	560
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	2 cut(s)	231, 432
EcoRV	GATATC	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	291
EgeI	GGCGCC	1 cut(s)	108
EheI	GGCGCC	1 cut(s)	108
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 591
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	40
FblI	GTMKAC	2 cut(s)	5, 113
Fnu4HI	GCNGC	1 cut(s)	438
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	438
GlaI	GCGC	3 cut(s)	108, 133, 283
GluI	GCNGC	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	437
HgaI	GACGC	3 cut(s)	232, 502, 529
HhaI	GCGC	3 cut(s)	109, 134, 284
Hin1I	GRCGYC	3 cut(s)	107, 243, 540
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	3 cut(s)	107, 132, 282
HinP1I	GCGC	3 cut(s)	107, 132, 282
HincII	GTYRAC	2 cut(s)	6, 405
HindII	GTYRAC	2 cut(s)	6, 405
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	1 cut(s)	609
HpaI	GTTAAC	1 cut(s)	405
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	5 cut(s)	6, 114, 277, 295, 405
Hpy188I	TCNGA	4 cut(s)	103, 166, 336, 498
Hpy188III	TCNNGA	8 cut(s)	157, 181, 199, 211, 292, 502, 544, 581
Hpy8I	GTNNAC	5 cut(s)	6, 114, 277, 295, 405
Hpy99I	CGWCG	8 cut(s)	121, 131, 170, 191, 248, 458, 518, 545
HpyAV	CCTTC	2 cut(s)	358, 599
HpyCH4III	ACNGT	2 cut(s)	217, 487
HpyCH4IV	ACGT	3 cut(s)	273, 453, 522
HpyCH4V	TGCA	5 cut(s)	205, 277, 312, 331, 451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 104, 274, 472, 546
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	3 cut(s)	273, 453, 522
Hsp92I	GRCGYC	3 cut(s)	107, 243, 540
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	3 cut(s)	107, 132, 282
KasI	GGCGCC	1 cut(s)	106
KspAI	GTTAAC	1 cut(s)	405
Kzo9I	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
LmnI	GCTCC	4 cut(s)	286, 343, 367, 424
LpnPI	CCDG	8 cut(s)	218, 224, 245, 382, 419, 446, 452, 494
LweI	GCATC	3 cut(s)	192, 249, 340
MaeII	ACGT	3 cut(s)	273, 453, 522
MalI	GATC	6 cut(s)	149, 185, 431, 459, 495, 500
MboI	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
MboII	GAAGA	8 cut(s)	28, 31, 38, 154, 157, 169, 220, 578
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	4 cut(s)	279, 291, 348, 522
Mly113I	GGCGCC	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	189
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	1 cut(s)	404
MslI	CAYNNNNRTG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	233, 434
MvaI	CCWGG	2 cut(s)	233, 434
MvnI	CGCG	5 cut(s)	134, 200, 284, 417, 582
MwoI	GCNNNNNNNGC	5 cut(s)	41, 104, 274, 472, 546
NarI	GGCGCC	1 cut(s)	107
NdeII	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	1 cut(s)	108
NruI	TCGCGA	2 cut(s)	200, 582
PdmI	GAANNNNTTC	1 cut(s)	533
PflMI	CCANNNNNTGG	1 cut(s)	487
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	439
PleI	GAGTC	1 cut(s)	617
PluTI	GGCGCC	1 cut(s)	110
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	617
Ppu21I	YACGTR	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	231, 432
PspCI	CACGTG	1 cut(s)	523
PspGI	CCWGG	2 cut(s)	231, 432
PspN4I	GGNNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	147
RruI	TCGCGA	2 cut(s)	200, 582
RseI	CAYNNNNRTG	1 cut(s)	257
SacI	GAGCTC	1 cut(s)	291
SalI	GTCGAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	1 cut(s)	438
Sau3AI	GATC	6 cut(s)	147, 183, 429, 457, 493, 498
SchI	GAGTC	1 cut(s)	618
ScrFI	CCNGG	2 cut(s)	233, 434
SduI	GDGCHC	4 cut(s)	279, 291, 348, 522
SetI	ASST	9 cut(s)	164, 177, 276, 291, 372, 429, 456, 525, 579
SfaNI	GCATC	3 cut(s)	192, 249, 340
SfoI	GGCGCC	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SspDI	GGCGCC	1 cut(s)	106
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	2 cut(s)	231, 432
TaaI	ACNGT	2 cut(s)	217, 487
TaiI	ACGT	3 cut(s)	276, 456, 525
TaqI	TCGA	8 cut(s)	5, 180, 186, 303, 456, 516, 543, 612
TaqII	GACCGA	1 cut(s)	23
TauI	GCSGC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TspGWI	ACGGA	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	487
VneI	GTGCAC	1 cut(s)	275
XmiI	GTMKAC	2 cut(s)	5, 113
XmnI	GAANNNNTTC	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.