Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0005907

Physical Location & Seq

Genomic Coordinates Reverse (-)

27388927 .. 27389499

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1210300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCGACTGAGAAAGAGGATATCGAAGCTCGTGACGCCACTGACACCGAGGAAGAGGAGCAGTCGGCGACGGAAAACTACGAGAGCAAGAAGATCTCCCTCAAGACCTCTGATGGCGAGATCTTCGAGATCGAGGAGAATGTCGCGATGCAGTTCCAGACTGTCAAGACATTCTTCCAAGATGAGAGCGTGGCACGCGACATGGTGATGCCGGTCCCGAACGTCCACAGCGGGGAGCTCGTCAAGATCATCGATTTCTGCACCAAAAGCCTAGATCTGAATCGGAAGGCGGAGCACGAGGAGGTGTCGAAGAAGGAGCTTAGGAAATTCAACAACGATTTCGTCAAGGACGAGACCACCGGTAACGTGATGGAGCTGACCCTGGCCGCCGATTACTTGAACGTCGATCAAATGCTGGGGGTGCTGAACCAGTGCGTCGCCGATCGGATCAAGAATAAGAGCGTCGAGTACGTGAGGAAGTTGTTCGGCGTCGAGAGTGATTTCACGCCCGAGGAAGAGCAGAAGCTTCGCGATGACTATGCATGGGCTTTTGAAGGAGTCGATGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

191

Amino Acids

21.89

Weight (kDa)

4.4

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	30 - 90	1.2e-13	Skp1 family, tetramerisation domain
Skp1	PF01466	137 - 183	5.6e-17	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g14710 FvH4_3g14720 FvH4_3g14730
malus_domestica	MD02G1116700.v1.1 MD08G1210300.v1.1 MD10G1208900.v1.1
prunus_persica	Prupe.4G132400_v2.0.a1
pyrus_communis	pycom08g18130 pycom10g17770
rosa_chinensis	RchiOBHm_Chr5g0024221 RchiOBHm_Chr5g0024251
rosa_laevigata	RLG00000032781 RLG00000032787
rosa_multiflora	Rmu_sc0009993.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055030 Rroxscaffold_1G00055730
rosa_rugosa	Rorug05G0082600 Rorug05G0082800
rosa_samantha	Rh5AG173200 Rh5BG170000 Rh5BG170100 Rh5CG185800 Rh5CG186200 Rh5DG172300 Rh5DG172700
rosa_wichuraiana	Rw0G000840 Rw5G015630 Rw5G015640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	3 cut(s)	146, 198, 531
AciI	CCGC	3 cut(s)	231, 290, 387
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	326
AcyI	GRCGYC	2 cut(s)	36, 489
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	1 cut(s)	232
AgeI	ACCGGT	1 cut(s)	359
AgsI	TTSAA	3 cut(s)	331, 400, 554
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	5 cut(s)	29, 238, 319, 376, 526
AluI	AGCT	5 cut(s)	29, 238, 319, 376, 526
Alw21I	GWGCWC	2 cut(s)	240, 297
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	455
Ama87I	CYCGRG	1 cut(s)	509
AoxI	GGCC	1 cut(s)	384
ApoI	RAATTY	1 cut(s)	326
AsiGI	ACCGGT	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	482
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	240
BauI	CACGAG	2 cut(s)	30, 296
Bbv12I	GWGCWC	2 cut(s)	240, 297
BccI	CCATC	2 cut(s)	107, 364
BcgI	CGANNNNNNTGC	4 cut(s)	509, 521, 543, 555
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	1 cut(s)	347
BfaI	CTAG	1 cut(s)	272
BglII	AGATCT	3 cut(s)	93, 120, 274
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	214
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	138, 198
Bpu10I	CCTNAGC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	86
Bsa29I	ATCGAT	1 cut(s)	252
BsaAI	YACGTR	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	2 cut(s)	36, 489
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	48, 381, 510
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	2 cut(s)	211, 359
Bse1I	ACTGG	1 cut(s)	430
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	383
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	3 cut(s)	48, 381, 510
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	430
BseRI	GAGGAG	3 cut(s)	71, 149, 314
BseYI	CCCAGC	1 cut(s)	415
BsgI	GTGCAG	1 cut(s)	244
Bsh1236I	CGCG	3 cut(s)	146, 198, 531
Bsh1285I	CGRYCG	1 cut(s)	445
BshFI	GGCC	1 cut(s)	386
BshTI	ACCGGT	1 cut(s)	359
BshVI	ATCGAT	1 cut(s)	252
BsiEI	CGRYCG	1 cut(s)	445
BsiHKAI	GWGCWC	2 cut(s)	240, 297
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	212, 360
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	240, 297
Bsp143I	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
Bsp68I	TCGCGA	2 cut(s)	146, 531
BspACI	CCGC	3 cut(s)	231, 290, 387
BspANI	GGCC	1 cut(s)	386
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	3 cut(s)	146, 198, 531
BspLI	GGNNCC	1 cut(s)	216
BspPI	GGATC	1 cut(s)	455
BspQI	GCTCTTC	1 cut(s)	510
BspTNI	GGTCTC	1 cut(s)	347
BsrFI	RCCGGY	2 cut(s)	211, 359
BsrI	ACTGG	1 cut(s)	430
BssAI	RCCGGY	2 cut(s)	211, 359
BssECI	CCNNGG	3 cut(s)	48, 381, 510
BssMI	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
BssNI	GRCGYC	2 cut(s)	36, 489
BssSI	CACGAG	2 cut(s)	30, 296
Bst2BI	CACGAG	2 cut(s)	30, 296
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	48, 510
BstACI	GRCGYC	2 cut(s)	36, 489
BstBAI	YACGTR	1 cut(s)	472
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	9, 320
BstFNI	CGCG	3 cut(s)	146, 198, 531
BstKTI	GATC	8 cut(s)	96, 123, 132, 249, 277, 409, 445, 450
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
BstMCI	CGRYCG	1 cut(s)	445
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 195, 267, 421
BstNI	CCWGG	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	381
BstUI	CGCG	3 cut(s)	146, 198, 531
BstX2I	RGATCY	3 cut(s)	93, 120, 274
BstYI	RGATCY	3 cut(s)	93, 120, 274
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	386
BsuTUI	ATCGAT	1 cut(s)	252
BtgZI	GCGATG	2 cut(s)	161, 546
BtsIMutI	CAGTG	2 cut(s)	39, 437
BtuMI	TCGCGA	2 cut(s)	146, 531
Cac8I	GCNNGC	1 cut(s)	196
Cfr10I	RCCGGY	2 cut(s)	211, 359
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	252
CseI	GACGC	4 cut(s)	44, 424, 451, 478
Csp6I	GTAC	1 cut(s)	469
CspAI	ACCGGT	1 cut(s)	359
CviAII	CATG	2 cut(s)	202, 543
CviJI	RGCY	8 cut(s)	29, 238, 270, 319, 376, 386, 526, 548
CviKI_1	RGCY	8 cut(s)	29, 238, 270, 319, 376, 386, 526, 548
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	9, 320
DpnI	GATC	8 cut(s)	95, 122, 131, 248, 276, 408, 444, 449
DpnII	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	48, 510
EarI	CTCTTC	2 cut(s)	48, 510
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco31I	GGTCTC	1 cut(s)	347
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	214
Eco53kI	GAGCTC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	2 cut(s)	205, 546
FaiI	YATR	3 cut(s)	203, 540, 544
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	201, 542
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	1 cut(s)	387
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	2 cut(s)	212, 360
HgaI	GACGC	4 cut(s)	44, 424, 451, 478
Hin1I	GRCGYC	2 cut(s)	36, 489
Hin1II	CATG	2 cut(s)	205, 546
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	280, 558
HpaII	CCGG	2 cut(s)	212, 360
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	2 cut(s)	6, 226
Hpy188I	TCNGA	4 cut(s)	112, 279, 285, 447
Hpy8I	GTNNAC	2 cut(s)	6, 226
Hpy99I	CGWCG	5 cut(s)	73, 407, 440, 467, 494
HpyAV	CCTTC	3 cut(s)	280, 307, 548
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	4 cut(s)	222, 366, 402, 471
HpyCH4V	TGCA	3 cut(s)	151, 261, 542
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 195, 267, 421
HpyF3I	CTNAG	2 cut(s)	9, 320
HpySE526I	ACGT	4 cut(s)	222, 366, 402, 471
Hsp92I	GRCGYC	2 cut(s)	36, 489
Hsp92II	CATG	2 cut(s)	205, 546
Kzo9I	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
LguI	GCTCTTC	1 cut(s)	510
LmnI	GCTCC	5 cut(s)	58, 235, 292, 316, 373
LpnPI	CCDG	7 cut(s)	170, 225, 368, 373, 395, 401, 443
LweI	GCATC	2 cut(s)	138, 198
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	4 cut(s)	222, 366, 402, 471
MaeIII	GTNAC	2 cut(s)	32, 362
MalI	GATC	8 cut(s)	95, 122, 131, 248, 276, 408, 444, 449
MboI	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
MboII	GAAGA	6 cut(s)	65, 103, 115, 166, 322, 527
MflI	RGATCY	3 cut(s)	93, 120, 274
MhlI	GDGCHC	2 cut(s)	240, 297
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	1 cut(s)	567
Mph1103I	ATGCAT	1 cut(s)	544
MroXI	GAANNNNTTC	1 cut(s)	482
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	2 cut(s)	212, 360
MspR9I	CCNGG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	3 cut(s)	146, 198, 531
MwoI	GCNNNNNNNGC	4 cut(s)	35, 195, 267, 421
NdeII	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
NlaIII	CATG	2 cut(s)	205, 546
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	32
NruI	TCGCGA	2 cut(s)	146, 531
NsiI	ATGCAT	1 cut(s)	544
PciSI	GCTCTTC	1 cut(s)	510
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PdmI	GAANNNNTTC	1 cut(s)	482
PfeI	GAWTC	1 cut(s)	280
PinAI	ACCGGT	1 cut(s)	359
PkrI	GCNGC	1 cut(s)	388
Ple19I	CGATCG	1 cut(s)	445
PleI	GAGTC	1 cut(s)	566
PpsI	GAGTC	1 cut(s)	566
Ppu21I	YACGTR	1 cut(s)	472
Psp124BI	GAGCTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	415
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	214
PsuI	RGATCY	3 cut(s)	93, 120, 274
PvuI	CGATCG	1 cut(s)	445
RruI	TCGCGA	2 cut(s)	146, 531
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	510
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	8 cut(s)	93, 120, 129, 246, 274, 406, 442, 447
Sau96I	GGNCC	1 cut(s)	214
SchI	GAGTC	1 cut(s)	567
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	240, 297
SfaNI	GCATC	2 cut(s)	138, 198
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	3 cut(s)	231, 290, 387
SspMI	CTAG	1 cut(s)	272
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	4 cut(s)	225, 369, 405, 474
TasI	AATT	1 cut(s)	326
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	280
TscAI	CASTG	2 cut(s)	46, 437
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	2 cut(s)	46, 437
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	482
XspI	CTAG	1 cut(s)	272
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.