FvH4_3g15320
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011541
Physical Location & Seq
Reverse (-)
9516245 .. 9518983
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g15320.t1

Sequence Viewer

Length: 1134 bp
ATGGTAGGGAGGGGAAGAACACCATGTTGTGATAAGAGCCAAGTGAAGAGAGGACCTTGGAGTCCTTCTGAGGACTTAAGGCTCATCAGCTTCATTCAGAAACACGGTCATGATAACTGGAGGGCTCTCCCTAAACAAGCAGGTTTACTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAACTACCTTCGGCCTGATCTGAAGCGAGGTAACTTCACAAAGGAGGAAGAAGAGTCCATCATTATGCTACATGAAGCATGGGGAAACAAGTGGTCCAAAATTGCATCCCATTTTCCTGGAAGAACAGACAACGAAATCAAGAATGTGTGGAACACTCATCTGCGGAAGAAATTGGCTTTGAAGTATTCTTGTGGAGATGATCAATCAAAGGAGTTATCTTCCATAACTTCCTCTTCATCCTCATCATCTTCTTCCAGTGCTTCATTTCAGTTGTCTAGTGGAGAACCGAGTGCAGGAGTCACCGCTGAATTACAGAATCAACCTAACCAAGAAAGCAACACGTCCAAGACCCGGAACGACTGTGAACTGCCCGATTCGTTGACAATCCAAGAAAAACTTGAAAAAAAATTACCAATGGAAGTAACAGATCAAGTTAGGGTTGATGATGCTGTAGGCATGAAAATGTTGACGACAAGTTCATCCTTTTCATCCTACGCCTCCTCAAACGGTTCAAGTTCCAGCCAAGGGGGCGGTGTTTCGAGGCCAGATGATTTGGTGTTTGACTTAAAAGGAGCTTATGAACCTCAAATAGCAGACAAGGCAGTCTTTGAAATTCCATTCGAATCTGACTATGGTTTCTGGAACATGTTAGATGGGACGTTATCATTTGAGGGTAACCCTGAGCCTCTACTACCTCAGGCGGATCAGACCTACCAGAGCTCAAACTTGGAGCTAGTCGAAAGTGGGAACTGGCTCAGTTACTTGGAGAAAGAACTTGGCCTTGAGGATTCAACAAAGACCAACAACCAAGATTTTGTGATGAAGGATGCAACCGAACAATTAGCGTCGGAGAAGTACTGTGATAAGTTGCCAAAGCCTACAGAAATGGACCACGGCATGGATGATTACTTCGGAATGTGGCCACCTTTGCCAGAGAACTCCGCTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

378

Amino Acids

42.13

Weight (kDa)

5.08

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 4.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 79 1.2e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 115 3.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 118 1.3e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 60, 785
Acc36I ACCTGC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 1081
AciI CCGC 5 cut(s) 346, 486, 714, 884, 1125
AclWI GGATC 2 cut(s) 188, 894
AcoI YGGCCR 1 cut(s) 1103
AcsI RAATTY 1 cut(s) 795
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 1040
AfiI CCNNNNNNNGG 4 cut(s) 476, 534, 708, 1081
AflII CTTAAG 1 cut(s) 76
AflIII ACRYGT 2 cut(s) 522, 828
AgsI TTSAA 5 cut(s) 364, 584, 696, 794, 975
AjiI CACGTC 1 cut(s) 525
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 4 cut(s) 90, 758, 903, 916
AluI AGCT 4 cut(s) 90, 758, 903, 916
Alw21I GWGCWC 1 cut(s) 905
AlwI GGATC 2 cut(s) 188, 894
AoxI GGCC 4 cut(s) 194, 725, 961, 1103
ApoI RAATTY 1 cut(s) 795
AspS9I GGNCC 3 cut(s) 53, 276, 1072
AsuC2I CCSGG 1 cut(s) 535
AsuHPI GGTGA 1 cut(s) 475
AsuII TTCGAA 1 cut(s) 804
AvaII GGWCC 3 cut(s) 53, 276, 1072
AxyI CCTNAGG 1 cut(s) 879
BalI TGGCCA 1 cut(s) 1105
BanII GRGCYC 2 cut(s) 127, 905
Bbv12I GWGCWC 1 cut(s) 905
BccI CCATC 3 cut(s) 171, 248, 830
BceAI ACGGC 1 cut(s) 1093
BciT130I CCWGG 1 cut(s) 300
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 535
BfaI CTAG 2 cut(s) 459, 917
BfmI CTRYAG 2 cut(s) 633, 1062
BfrI CTTAAG 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 131
BglI GCCNNNNNGGC 1 cut(s) 711
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 2 cut(s) 300, 535
Bme18I GGWCC 3 cut(s) 53, 276, 1072
BmgBI CACGTC 1 cut(s) 525
BmgT120I GGNCC 3 cut(s) 53, 276, 1072
BmrFI CCNGG 2 cut(s) 300, 535
BmsI GCATC 3 cut(s) 296, 619, 1000
BpmI CTGGAG 1 cut(s) 139
Bpu10I CCTNAGC 1 cut(s) 864
Bpu14I TTCGAA 1 cut(s) 804
BpuEI CTTGAG 1 cut(s) 986
BpuMI CCSGG 1 cut(s) 535
BsaJI CCNNGG 3 cut(s) 56, 706, 1075
Bsc4I CCNNNNNNNGG 4 cut(s) 476, 534, 708, 1081
Bse1I ACTGG 3 cut(s) 122, 438, 938
Bse21I CCTNAGG 1 cut(s) 879
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 3 cut(s) 56, 706, 1075
BseGI GGATG 6 cut(s) 287, 419, 662, 671, 1015, 1090
BseLI CCNNNNNNNGG 4 cut(s) 476, 534, 708, 1081
BseMII CTCAG 4 cut(s) 60, 855, 893, 952
BseNI ACTGG 3 cut(s) 122, 438, 938
BseRI GAGGAG 1 cut(s) 673
BsgI GTGCAG 1 cut(s) 495
BshFI GGCC 4 cut(s) 196, 727, 963, 1105
BsiHKAI GWGCWC 1 cut(s) 905
BsiSI CCGG 1 cut(s) 535
BslFI GGGAC 1 cut(s) 853
BslI CCNNNNNNNGG 4 cut(s) 476, 534, 708, 1081
BsmFI GGGAC 1 cut(s) 853
BsnI GGCC 4 cut(s) 196, 727, 963, 1105
Bsp119I TTCGAA 1 cut(s) 804
Bsp1286I GDGCHC 2 cut(s) 127, 905
Bsp143I GATC 5 cut(s) 180, 199, 382, 610, 886
BspACI CCGC 5 cut(s) 346, 486, 714, 884, 1125
BspANI GGCC 4 cut(s) 196, 727, 963, 1105
BspCNI CTCAG 4 cut(s) 61, 856, 892, 951
BspHI TCATGA 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 2 cut(s) 188, 894
BspT104I TTCGAA 1 cut(s) 804
BspTI CTTAAG 1 cut(s) 76
BsrI ACTGG 3 cut(s) 122, 438, 938
BssECI CCNNGG 3 cut(s) 56, 706, 1075
BssMI GATC 5 cut(s) 180, 199, 382, 610, 886
BssT1I CCWWGG 2 cut(s) 56, 706
Bst2UI CCWGG 1 cut(s) 300
Bst4CI ACNGT 4 cut(s) 107, 545, 692, 1043
Bst6I CTCTTC 3 cut(s) 41, 228, 421
BstAFI CTTAAG 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 804
BstDEI CTNAG 4 cut(s) 69, 864, 879, 938
BstDSI CCRYGG 1 cut(s) 1075
BstEII GGTNACC 1 cut(s) 857
BstF5I GGATG 6 cut(s) 287, 419, 662, 671, 1015, 1090
BstKTI GATC 5 cut(s) 183, 202, 385, 613, 889
BstMBI GATC 5 cut(s) 180, 199, 382, 610, 886
BstMWI GCNNNNNNNGC 3 cut(s) 711, 782, 1111
BstNI CCWGG 1 cut(s) 300
BstNSI RCATGY 1 cut(s) 832
BstPI GGTNACC 1 cut(s) 857
BstSCI CCNGG 2 cut(s) 298, 533
BstSFI CTRYAG 2 cut(s) 633, 1062
BstXI CCANNNNNNTGG 1 cut(s) 299
Bsu36I CCTNAGG 1 cut(s) 879
BsuRI GGCC 4 cut(s) 196, 727, 963, 1105
BtgI CCRYGG 1 cut(s) 1075
BtgZI GCGATG 1 cut(s) 166
BtrI CACGTC 1 cut(s) 525
BtsCI GGATG 6 cut(s) 287, 419, 662, 671, 1015, 1090
BtsIMutI CAGTG 1 cut(s) 445
BveI ACCTGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 3 cut(s) 53, 276, 1072
CseI GACGC 1 cut(s) 1017
Csp6I GTAC 1 cut(s) 1039
CviAII CATG 7 cut(s) 24, 110, 254, 261, 640, 829, 1081
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 4 cut(s) 69, 864, 879, 938
DpnI GATC 5 cut(s) 182, 201, 384, 612, 888
DpnII GATC 5 cut(s) 180, 199, 382, 610, 886
DrdI GACNNNNNNGTC 2 cut(s) 60, 785
DseDI GACNNNNNNGTC 2 cut(s) 60, 785
EaeI YGGCCR 1 cut(s) 1103
Eam1104I CTCTTC 3 cut(s) 41, 228, 421
EarI CTCTTC 3 cut(s) 41, 228, 421
EciI GGCGGA 1 cut(s) 899
Ecl136II GAGCTC 1 cut(s) 903
Eco130I CCWWGG 2 cut(s) 56, 706
Eco24I GRGCYC 2 cut(s) 127, 905
Eco47I GGWCC 3 cut(s) 53, 276, 1072
Eco53kI GAGCTC 1 cut(s) 903
Eco57I CTGAAG 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 879
Eco91I GGTNACC 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 903
EcoO109I RGGNCCY 1 cut(s) 53
EcoO65I GGTNACC 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 298
EcoT14I CCWWGG 2 cut(s) 56, 706
EcoT38I GRGCYC 2 cut(s) 127, 905
ErhI CCWWGG 2 cut(s) 56, 706
FaeI CATG 7 cut(s) 27, 113, 257, 264, 643, 832, 1084
FalI AAGNNNNNCTT 4 cut(s) 564, 596, 773, 805
FaqI GGGAC 1 cut(s) 853
FatI CATG 7 cut(s) 23, 109, 253, 260, 639, 828, 1080
FbaI TGATCA 1 cut(s) 382
FokI GGATG 6 cut(s) 274, 406, 649, 658, 1022, 1097
FriOI GRGCYC 2 cut(s) 127, 905
FspBI CTAG 2 cut(s) 459, 917
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 4 cut(s) 196, 727, 963, 1105
HapII CCGG 1 cut(s) 535
HgaI GACGC 1 cut(s) 1017
Hin1II CATG 7 cut(s) 27, 113, 257, 264, 643, 832, 1084
HincII GTYRAC 2 cut(s) 564, 651
HindII GTYRAC 2 cut(s) 564, 651
HinfI GANTC 7 cut(s) 61, 236, 480, 499, 557, 806, 971
HpaII CCGG 1 cut(s) 535
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 4 cut(s) 146, 548, 564, 651
Hpy188I TCNGA 7 cut(s) 70, 99, 204, 811, 891, 1033, 1097
Hpy188III TCNNGA 3 cut(s) 110, 322, 823
Hpy8I GTNNAC 4 cut(s) 146, 548, 564, 651
Hpy99I CGWCG 1 cut(s) 1033
HpyAV CCTTC 3 cut(s) 75, 200, 1000
HpyCH4III ACNGT 4 cut(s) 107, 545, 692, 1043
HpyCH4IV ACGT 2 cut(s) 524, 842
HpyCH4V TGCA 3 cut(s) 287, 476, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 711, 782, 1111
HpyF3I CTNAG 4 cut(s) 69, 864, 879, 938
HpySE526I ACGT 2 cut(s) 524, 842
Hsp92II CATG 7 cut(s) 27, 113, 257, 264, 643, 832, 1084
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 5 cut(s) 180, 199, 382, 610, 886
LmnI GCTCC 2 cut(s) 755, 913
LweI GCATC 3 cut(s) 296, 619, 1000
MaeI CTAG 2 cut(s) 459, 917
MaeII ACGT 2 cut(s) 524, 842
MaeIII GTNAC 5 cut(s) 212, 481, 604, 857, 941
MalI GATC 5 cut(s) 182, 201, 384, 612, 888
MboI GATC 5 cut(s) 180, 199, 382, 610, 886
MhlI GDGCHC 2 cut(s) 127, 905
MlsI TGGCCA 1 cut(s) 1105
MluCI AATT 6 cut(s) 282, 353, 491, 590, 795, 1022
MluNI TGGCCA 1 cut(s) 1105
MlyI GAGTC 3 cut(s) 70, 245, 489
MmeI TCCRAC 1 cut(s) 1011
Mox20I TGGCCA 1 cut(s) 1105
MscI TGGCCA 1 cut(s) 1105
MseI TTAA 2 cut(s) 77, 749
MslI CAYNNNNRTG 3 cut(s) 108, 245, 644
Msp20I TGGCCA 1 cut(s) 1105
MspA1I CMGCKG 1 cut(s) 488
MspCI CTTAAG 1 cut(s) 76
MspI CCGG 1 cut(s) 535
MspR9I CCNGG 2 cut(s) 300, 535
MvaI CCWGG 1 cut(s) 300
MwoI GCNNNNNNNGC 3 cut(s) 711, 782, 1111
NciI CCSGG 1 cut(s) 535
NdeII GATC 5 cut(s) 180, 199, 382, 610, 886
NlaIII CATG 7 cut(s) 27, 113, 257, 264, 643, 832, 1084
NmuCI GTSAC 1 cut(s) 481
NspI RCATGY 1 cut(s) 832
NspV TTCGAA 1 cut(s) 804
PagI TCATGA 1 cut(s) 109
PciI ACATGT 1 cut(s) 828
PfeI GAWTC 4 cut(s) 499, 557, 806, 971
PflMI CCANNNNNTGG 1 cut(s) 1081
PfoI TCCNGGA 1 cut(s) 298
PleI GAGTC 3 cut(s) 69, 244, 488
PpsI GAGTC 3 cut(s) 69, 244, 488
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 905
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 298
PspEI GGTNACC 1 cut(s) 857
PspGI CCWGG 1 cut(s) 298
PspPI GGNCC 3 cut(s) 53, 276, 1072
PspPPI RGGWCCY 1 cut(s) 53
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
RseI CAYNNNNRTG 3 cut(s) 108, 245, 644
SacI GAGCTC 1 cut(s) 905
SaqAI TTAA 2 cut(s) 77, 749
Sau3AI GATC 5 cut(s) 180, 199, 382, 610, 886
Sau96I GGNCC 3 cut(s) 53, 276, 1072
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 3 cut(s) 70, 245, 489
ScrFI CCNGG 2 cut(s) 300, 535
SduI GDGCHC 2 cut(s) 127, 905
SfaNI GCATC 3 cut(s) 296, 619, 1000
SfcI CTRYAG 2 cut(s) 633, 1062
SfuI TTCGAA 1 cut(s) 804
SinI GGWCC 3 cut(s) 53, 276, 1072
SmiMI CAYNNNNRTG 3 cut(s) 108, 245, 644
SmlI CTYRAG 2 cut(s) 76, 965
SmoI CTYRAG 2 cut(s) 76, 965
Sse9I AATT 6 cut(s) 282, 353, 491, 590, 795, 1022
SsiI CCGC 5 cut(s) 346, 486, 714, 884, 1125
SspMI CTAG 2 cut(s) 459, 917
SstI GAGCTC 1 cut(s) 905
StyD4I CCNGG 2 cut(s) 298, 533
StyI CCWWGG 2 cut(s) 56, 706
TaaI ACNGT 4 cut(s) 107, 545, 692, 1043
TaiI ACGT 2 cut(s) 527, 845
TaqI TCGA 3 cut(s) 722, 804, 921
TasI AATT 6 cut(s) 282, 353, 491, 590, 795, 1022
TatI WGTACW 1 cut(s) 1038
TfiI GAWTC 4 cut(s) 499, 557, 806, 971
Tru1I TTAA 2 cut(s) 77, 749
Tru9I TTAA 2 cut(s) 77, 749
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 481
TspDTI ATGAA 9 cut(s) 82, 270, 408, 435, 651, 656, 660, 777, 1019
TspRI CASTG 1 cut(s) 445
Van91I CCANNNNNTGG 1 cut(s) 1081
Vha464I CTTAAG 1 cut(s) 76
VpaK11BI GGWCC 3 cut(s) 53, 276, 1072
XapI RAATTY 1 cut(s) 795
XceI RCATGY 1 cut(s) 832
XspI CTAG 2 cut(s) 459, 917
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.