Rroxscaffold_1G00053420
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011541
Physical Location & Seq
Forward (+)
74306554 .. 74309764
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053420.1

Sequence Viewer

Length: 975 bp
ATGGTAACTGGAGGGCTCTCCCTAAACAAGCAGGAATATTCCATCACACCTACATATTTGAATCAATCAAGACATAATGTTTTCCTAGCTAATGAAAGTGTGATCCTGTGCAGGTGGTCCAAAATTGCATCCCATTTTCCTGGAAGAACAGACAACGAAATCAAGAATGTGTGGAACACTCATCTGCGGAAGAGATTGGCTTTGAAGAAATCTTGTGGAGATGATCAATCAAAGGAGTTATCTTCCATAACTTCCTCTTCCTCATCTTCTTCTAGTGCTTCATTTCAGTTGTCTAGAGGAAAACCAAGTGTAGGAGCCACCACTGAATTCGAGCATCAATCTAACCAAGAAAGCAACATGTCCAAAAACCGGAACGACTGTGAACTGCCCAATTCGATGACAATCCAAGAAAAACTTGATCAAAATATACCAATGGAAGTAACAAATCAAGTAAGGGTTGATGATGCTAAAGGCGTGAAATCGTTGACCATAAGTTCTTCCTTTTCATCTCATGACTCCTCAAACGGCTCAAGTTCGAGCCAAGGCGGCGGTATTTCAAGGCCAGATGATTTGGTGTTTGACTTTAAAGGAGCTTATGAACCTCAAATTGCAGACAAGGAAGTCTTTGAAATTCCATTCGAGTCTGACCATGATTTCTGGAACATGTTAGATGAGTTTGTGCCCTTTCAGTCAAACCCTGAACCTCTATTACCTCAGGCGGATCAGACCTACCAGAGCTCAAACTTAGAGCTAGTTGAAAGTGGAAAGTGGCTCAGTTACTTGGAGAGTGAGCTTGGCCTTGAGGATTCAACAAAGACCGAGATCAACAACCAGGATTTTGTGATGAAGGATTCAACTGAACAATTAGTGCCGGAGAAGTACTGTGACAAGTTGCCAAAGCCTGCAGAAATTGACCAGGACATGGATGATTACTTCGGAATGTGGCCCTCTTGGCCAGACAACTCTGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

324

Amino Acids

36.36

Weight (kDa)

4.63

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 38 - 62 8.9e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 102
AasI GACNNNNNNGTC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 102
AccB7I CCANNNNNTGG 1 cut(s) 922
AciI CCGC 4 cut(s) 187, 546, 549, 719
AclWI GGATC 2 cut(s) 97, 729
AcoI YGGCCR 1 cut(s) 953
AcsI RAATTY 2 cut(s) 326, 630
AfaI GTAC 1 cut(s) 881
AfiI CCNNNNNNNGG 3 cut(s) 311, 369, 922
AflIII ACRYGT 2 cut(s) 357, 663
AgsI TTSAA 7 cut(s) 61, 205, 558, 629, 758, 810, 855
AjnI CCWGG 3 cut(s) 139, 831, 915
AluBI AGCT 5 cut(s) 89, 593, 738, 751, 793
AluI AGCT 5 cut(s) 89, 593, 738, 751, 793
Alw21I GWGCWC 1 cut(s) 740
AlwI GGATC 2 cut(s) 97, 729
AoxI GGCC 4 cut(s) 560, 796, 944, 953
ApoI RAATTY 2 cut(s) 326, 630
AspS9I GGNCC 2 cut(s) 117, 945
AvaII GGWCC 1 cut(s) 117
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 684
BalI TGGCCA 1 cut(s) 955
BanII GRGCYC 2 cut(s) 18, 740
Bbv12I GWGCWC 1 cut(s) 740
BccI CCATC 1 cut(s) 50
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 3 cut(s) 141, 833, 917
BclI TGATCA 2 cut(s) 223, 418
BfaI CTAG 4 cut(s) 86, 273, 294, 752
BfmI CTRYAG 1 cut(s) 903
BfuAI ACCTGC 1 cut(s) 102
BglI GCCNNNNNGGC 2 cut(s) 546, 952
BisI GCNGC 1 cut(s) 547
BlsI GCNGC 1 cut(s) 548
BmcAI AGTACT 1 cut(s) 881
Bme1390I CCNGG 3 cut(s) 141, 833, 917
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 117, 945
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 3 cut(s) 141, 833, 917
BmsI GCATC 3 cut(s) 137, 343, 454
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 514, 821
BsaBI GATNNNNATC 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 541
BsaWI WCCGGW 1 cut(s) 369
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 369, 922
Bse1I ACTGG 1 cut(s) 13
Bse21I CCTNAGG 1 cut(s) 714
Bse8I GATNNNNATC 1 cut(s) 401
BseBI CCWGG 3 cut(s) 141, 833, 917
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 2 cut(s) 128, 931
BseJI GATNNNNATC 1 cut(s) 401
BseLI CCNNNNNNNGG 3 cut(s) 311, 369, 922
BseMII CTCAG 2 cut(s) 728, 787
BseNI ACTGG 1 cut(s) 13
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 684
BsgI GTGCAG 1 cut(s) 130
BshFI GGCC 4 cut(s) 562, 798, 946, 955
BsiHKAI GWGCWC 1 cut(s) 740
BsiSI CCGG 2 cut(s) 370, 872
BslI CCNNNNNNNGG 3 cut(s) 311, 369, 922
BsnI GGCC 4 cut(s) 562, 798, 946, 955
Bsp1286I GDGCHC 3 cut(s) 18, 684, 740
Bsp143I GATC 5 cut(s) 102, 223, 418, 721, 822
BspACI CCGC 4 cut(s) 187, 546, 549, 719
BspANI GGCC 4 cut(s) 562, 798, 946, 955
BspCNI CTCAG 2 cut(s) 727, 786
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 907
BspMI ACCTGC 1 cut(s) 102
BspPI GGATC 2 cut(s) 97, 729
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 5 cut(s) 102, 223, 418, 721, 822
BssT1I CCWWGG 1 cut(s) 541
Bst2UI CCWGG 3 cut(s) 141, 833, 917
Bst4CI ACNGT 2 cut(s) 380, 884
Bst6I CTCTTC 2 cut(s) 185, 262
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 3 cut(s) 714, 745, 773
BstF5I GGATG 2 cut(s) 128, 931
BstKTI GATC 5 cut(s) 105, 226, 421, 724, 825
BstMBI GATC 5 cut(s) 102, 223, 418, 721, 822
BstMWI GCNNNNNNNGC 2 cut(s) 546, 952
BstNI CCWGG 3 cut(s) 141, 833, 917
BstNSI RCATGY 2 cut(s) 361, 667
BstSCI CCNGG 3 cut(s) 139, 831, 915
BstSFI CTRYAG 1 cut(s) 903
BstSLI GKGCMC 1 cut(s) 684
BstXI CCANNNNNNTGG 1 cut(s) 140
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 4 cut(s) 562, 798, 946, 955
BtsCI GGATG 2 cut(s) 128, 931
BtsIMutI CAGTG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 903
CciI TCATGA 1 cut(s) 511
Cfr13I GGNCC 2 cut(s) 117, 945
Csp6I GTAC 1 cut(s) 880
CviAII CATG 5 cut(s) 358, 512, 650, 664, 922
CviQI GTAC 1 cut(s) 880
DdeI CTNAG 3 cut(s) 714, 745, 773
DpnI GATC 5 cut(s) 104, 225, 420, 723, 824
DpnII GATC 5 cut(s) 102, 223, 418, 721, 822
DraI TTTAAA 1 cut(s) 586
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
EaeI YGGCCR 1 cut(s) 953
Eam1104I CTCTTC 2 cut(s) 185, 262
EarI CTCTTC 2 cut(s) 185, 262
EciI GGCGGA 1 cut(s) 734
Ecl136II GAGCTC 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 541
Eco24I GRGCYC 2 cut(s) 18, 740
Eco47I GGWCC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 738
Eco81I CCTNAGG 1 cut(s) 714
EcoICRI GAGCTC 1 cut(s) 738
EcoRI GAATTC 1 cut(s) 326
EcoRII CCWGG 3 cut(s) 139, 831, 915
EcoT14I CCWWGG 1 cut(s) 541
EcoT38I GRGCYC 2 cut(s) 18, 740
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 5 cut(s) 361, 515, 653, 667, 925
FalI AAGNNNNNCTT 4 cut(s) 399, 431, 608, 640
FatI CATG 5 cut(s) 357, 511, 649, 663, 921
FbaI TGATCA 2 cut(s) 223, 418
Fnu4HI GCNGC 1 cut(s) 547
FokI GGATG 2 cut(s) 115, 938
FriOI GRGCYC 2 cut(s) 18, 740
Fsp4HI GCNGC 1 cut(s) 547
FspBI CTAG 4 cut(s) 86, 273, 294, 752
GluI GCNGC 1 cut(s) 547
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 4 cut(s) 562, 798, 946, 955
HapII CCGG 2 cut(s) 370, 872
Hin1II CATG 5 cut(s) 361, 515, 653, 667, 925
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 5 cut(s) 61, 515, 641, 806, 851
HpaII CCGG 2 cut(s) 370, 872
Hpy166II GTNNAC 2 cut(s) 383, 486
Hpy188I TCNGA 3 cut(s) 646, 726, 938
Hpy188III TCNNGA 5 cut(s) 69, 163, 294, 512, 658
Hpy8I GTNNAC 2 cut(s) 383, 486
HpyAV CCTTC 1 cut(s) 841
HpyCH4III ACNGT 2 cut(s) 380, 884
HpyCH4V TGCA 4 cut(s) 111, 128, 611, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 546, 952
HpyF3I CTNAG 3 cut(s) 714, 745, 773
Hsp92II CATG 5 cut(s) 361, 515, 653, 667, 925
Ksp22I TGATCA 2 cut(s) 223, 418
Kzo9I GATC 5 cut(s) 102, 223, 418, 721, 822
LmnI GCTCC 2 cut(s) 314, 590
LweI GCATC 3 cut(s) 137, 343, 454
MaeI CTAG 4 cut(s) 86, 273, 294, 752
MaeIII GTNAC 4 cut(s) 4, 439, 776, 884
MalI GATC 5 cut(s) 104, 225, 420, 723, 824
MboI GATC 5 cut(s) 102, 223, 418, 721, 822
MboII GAAGA 8 cut(s) 156, 202, 217, 234, 249, 258, 261, 489
MhlI GDGCHC 3 cut(s) 18, 684, 740
MlsI TGGCCA 1 cut(s) 955
MluCI AATT 7 cut(s) 123, 326, 391, 606, 630, 863, 909
MluNI TGGCCA 1 cut(s) 955
MlyI GAGTC 2 cut(s) 509, 650
Mox20I TGGCCA 1 cut(s) 955
MscI TGGCCA 1 cut(s) 955
MseI TTAA 1 cut(s) 585
Msp20I TGGCCA 1 cut(s) 955
MspI CCGG 2 cut(s) 370, 872
MspR9I CCNGG 3 cut(s) 141, 833, 917
MvaI CCWGG 3 cut(s) 141, 833, 917
MwoI GCNNNNNNNGC 2 cut(s) 546, 952
NdeII GATC 5 cut(s) 102, 223, 418, 721, 822
NlaIII CATG 5 cut(s) 361, 515, 653, 667, 925
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 884
NspI RCATGY 2 cut(s) 361, 667
PagI TCATGA 1 cut(s) 511
PaqCI CACCTGC 1 cut(s) 102
PciI ACATGT 2 cut(s) 357, 663
PfeI GAWTC 3 cut(s) 61, 806, 851
PflMI CCANNNNNTGG 1 cut(s) 922
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 1 cut(s) 548
PleI GAGTC 2 cut(s) 509, 649
PpsI GAGTC 2 cut(s) 509, 649
PscI ACATGT 2 cut(s) 357, 663
Psp124BI GAGCTC 1 cut(s) 740
Psp6I CCWGG 3 cut(s) 139, 831, 915
PspGI CCWGG 3 cut(s) 139, 831, 915
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 117, 945
PsrI GAACNNNNNNTAC 2 cut(s) 693, 725
PstI CTGCAG 1 cut(s) 907
RsaI GTAC 1 cut(s) 881
RsaNI GTAC 1 cut(s) 880
SacI GAGCTC 1 cut(s) 740
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 1 cut(s) 547
Sau3AI GATC 5 cut(s) 102, 223, 418, 721, 822
Sau96I GGNCC 2 cut(s) 117, 945
ScaI AGTACT 1 cut(s) 881
SchI GAGTC 2 cut(s) 509, 650
ScrFI CCNGG 3 cut(s) 141, 833, 917
SduI GDGCHC 3 cut(s) 18, 684, 740
SfaNI GCATC 3 cut(s) 137, 343, 454
SfcI CTRYAG 1 cut(s) 903
SfiI GGCCNNNNNGGCC 1 cut(s) 952
SinI GGWCC 1 cut(s) 117
SmlI CTYRAG 2 cut(s) 529, 800
SmoI CTYRAG 2 cut(s) 529, 800
Sse9I AATT 7 cut(s) 123, 326, 391, 606, 630, 863, 909
SsiI CCGC 4 cut(s) 187, 546, 549, 719
SspI AATATT 1 cut(s) 38
SspMI CTAG 4 cut(s) 86, 273, 294, 752
SstI GAGCTC 1 cut(s) 740
StyD4I CCNGG 3 cut(s) 139, 831, 915
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 2 cut(s) 380, 884
TaqI TCGA 4 cut(s) 330, 395, 536, 639
TaqII GACCGA 1 cut(s) 833
TasI AATT 7 cut(s) 123, 326, 391, 606, 630, 863, 909
TatI WGTACW 1 cut(s) 879
TauI GCSGC 1 cut(s) 549
TfiI GAWTC 3 cut(s) 61, 806, 851
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 884
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 5 cut(s) 108, 270, 495, 612, 860
TspRI CASTG 1 cut(s) 328
Van91I CCANNNNNTGG 1 cut(s) 922
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 2 cut(s) 326, 630
XbaI TCTAGA 1 cut(s) 293
XceI RCATGY 2 cut(s) 361, 667
XspI CTAG 4 cut(s) 86, 273, 294, 752
ZrmI AGTACT 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.