Rh5BG179000
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011541
Physical Location & Seq
Reverse (-)
19424449 .. 19427731
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG179000.1

Sequence Viewer

Length: 1134 bp
ATGGGGGGGAAGGGAAGAACACCATGTTGTGATAAGAGCCAAGTGAAGAGAGGTCCCTGGAGTCCTTCTGAGGACTTGAGGCTTATCAGCTTCATTCAGAAACACGGCCATGGTAACTGGAGGGCTCTCCCTAAACAAGCAGGTCTACTGCGATGTGGGAAAAGTTGTCGTTTGAGATGGATTAACTACCTTCGGCCTGATCTGAAGCGAGGTAACTTCACAAAAGAGGAAGAGGAGTCCATAATTAAGCTACATGAAACTTGGGGAAACAAGTGGTCCAAAATTGCATCCCATTTTCCTGGAAGAACAGACAACGAAATCAAGAATGTGTGGAACACTCATCTGCGGAAGAGATTGGCTTTGAAGAAATCTTGTGGAGATGATCAATCAAAGGAGTCATCTTCCATAACTTCCTCTTCCTCATCTTCTTCTAGTGCTTCATTTCAGTTGTCTAGAGGAAAACCAAATGTAGGAGCCACCGCTGAATTCGAGCATCAATCTAACCAAGAAAGCAACATGTCCAAAAACCGGAACGACTGTGAACTGCCCAATTCGACGACAATCCAAGAAAAACTTGATCAAAATATACCAATGGAAGTAACAAATCAAGTTAGGGTTGATGATGCTAAAGGCGTGAAAACGTTGACCATAAGTTCTTCCTTTTCATCTCATGACTCCTCAAACGGCTCAAATTCCAGCCAAGGCGGCGGTATTTCAAGGCCAGATGATTTGGTGTTTGACTTTAAAGGAGCTTATGAACCTCAAATTGCAGACAAGGAAGTCTTTGAAATTCCATTCGAGTCTGACCATGATTTCTGGAACATGTTAGATGAGTTTGTGCCCTTTCAGTCAAACCCTGAACCTCTATTACCTCAGGCGGATCAGACCTACCAGAGCTCAAACTTAGAGCTAGTTGAAAGTGGAAAGTGGCTCAGTTACTTGGAGAGTGAGCTTGGCCTTGAGGATTCAACAAAGACCGAGATCAACAACCAGGATTTTGTGATGAAGGATGCAACTGAACAATTAGTGCCGGAGAAGTACTGTGACAAGTTGCCAAAGCCTGCAGAAATTGACCAGGACATGGATGATTACTTCGGAATGTGGCCTTCTTGGCCAGACAACTCTGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

377

Amino Acids

42.56

Weight (kDa)

5.28

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 79 1.3e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 115 3.8e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 1.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 779
Acc36I ACCTGC 1 cut(s) 131
AccB7I CCANNNNNTGG 1 cut(s) 1081
AccI GTMKAC 1 cut(s) 145
AciI CCGC 5 cut(s) 346, 480, 705, 708, 878
AclI AACGTT 1 cut(s) 641
AclWI GGATC 1 cut(s) 888
AcoI YGGCCR 2 cut(s) 106, 1112
AcsI RAATTY 3 cut(s) 485, 691, 789
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 1 cut(s) 1040
AfiI CCNNNNNNNGG 3 cut(s) 470, 528, 1081
AflIII ACRYGT 2 cut(s) 516, 822
AgsI TTSAA 5 cut(s) 364, 717, 788, 917, 969
AjnI CCWGG 4 cut(s) 56, 298, 990, 1074
AluBI AGCT 6 cut(s) 90, 250, 752, 897, 910, 952
AluI AGCT 6 cut(s) 90, 250, 752, 897, 910, 952
Alw21I GWGCWC 1 cut(s) 899
AlwI GGATC 1 cut(s) 888
AoxI GGCC 6 cut(s) 106, 194, 719, 955, 1103, 1112
ApoI RAATTY 3 cut(s) 485, 691, 789
AspS9I GGNCC 2 cut(s) 53, 276
AvaII GGWCC 2 cut(s) 53, 276
AxyI CCTNAGG 1 cut(s) 873
BaeGI GKGCMC 1 cut(s) 843
BalI TGGCCA 1 cut(s) 1114
BanII GRGCYC 2 cut(s) 127, 899
Bbv12I GWGCWC 1 cut(s) 899
BccI CCATC 1 cut(s) 171
BceAI ACGGC 2 cut(s) 121, 700
BciT130I CCWGG 4 cut(s) 58, 300, 992, 1076
BclI TGATCA 2 cut(s) 382, 577
BfaI CTAG 3 cut(s) 432, 453, 911
BfmI CTRYAG 1 cut(s) 1062
BfuAI ACCTGC 1 cut(s) 131
BglI GCCNNNNNGGC 2 cut(s) 705, 1111
BisI GCNGC 1 cut(s) 706
BlsI GCNGC 1 cut(s) 707
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 4 cut(s) 58, 300, 992, 1076
Bme18I GGWCC 2 cut(s) 53, 276
BmgT120I GGNCC 2 cut(s) 53, 276
BmiI GGNNCC 2 cut(s) 55, 475
BmrFI CCNGG 4 cut(s) 58, 300, 992, 1076
BmsI GCATC 4 cut(s) 296, 502, 613, 1000
BpmI CTGGAG 2 cut(s) 79, 139
BpuEI CTTGAG 2 cut(s) 97, 980
BsaJI CCNNGG 3 cut(s) 56, 109, 700
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 3 cut(s) 470, 528, 1081
Bse1I ACTGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 873
BseBI CCWGG 4 cut(s) 58, 300, 992, 1076
BseDI CCNNGG 3 cut(s) 56, 109, 700
BseGI GGATG 3 cut(s) 287, 1015, 1090
BseLI CCNNNNNNNGG 3 cut(s) 470, 528, 1081
BseMII CTCAG 3 cut(s) 60, 887, 946
BseNI ACTGG 1 cut(s) 122
BseRI GAGGAG 2 cut(s) 248, 667
BseSI GKGCMC 1 cut(s) 843
BshFI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
BsiHKAI GWGCWC 1 cut(s) 899
BsiSI CCGG 2 cut(s) 529, 1031
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 3 cut(s) 470, 528, 1081
BsmFI GGGAC 1 cut(s) 39
BsnI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
Bsp1286I GDGCHC 3 cut(s) 127, 843, 899
Bsp143I GATC 5 cut(s) 199, 382, 577, 880, 981
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 5 cut(s) 346, 480, 705, 708, 878
BspANI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
BspCNI CTCAG 3 cut(s) 61, 886, 945
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 2 cut(s) 55, 475
BspMAI CTGCAG 1 cut(s) 1066
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 888
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 56, 109, 700
BssMI GATC 5 cut(s) 199, 382, 577, 880, 981
BssT1I CCWWGG 2 cut(s) 109, 700
Bst2UI CCWGG 4 cut(s) 58, 300, 992, 1076
Bst4CI ACNGT 2 cut(s) 539, 1043
Bst6I CTCTTC 4 cut(s) 41, 225, 344, 421
BstC8I GCNNGC 1 cut(s) 1062
BstDEI CTNAG 4 cut(s) 69, 873, 904, 932
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 287, 1015, 1090
BstKTI GATC 5 cut(s) 202, 385, 580, 883, 984
BstMBI GATC 5 cut(s) 199, 382, 577, 880, 981
BstMWI GCNNNNNNNGC 2 cut(s) 705, 1111
BstNI CCWGG 4 cut(s) 58, 300, 992, 1076
BstNSI RCATGY 2 cut(s) 520, 826
BstSCI CCNGG 4 cut(s) 56, 298, 990, 1074
BstSFI CTRYAG 1 cut(s) 1062
BstSLI GKGCMC 1 cut(s) 843
BstXI CCANNNNNNTGG 1 cut(s) 299
Bsu36I CCTNAGG 1 cut(s) 873
BsuRI GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 3 cut(s) 287, 1015, 1090
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 1062
CciI TCATGA 1 cut(s) 670
Cfr13I GGNCC 2 cut(s) 53, 276
Csp6I GTAC 1 cut(s) 1039
CviAII CATG 8 cut(s) 24, 110, 254, 517, 671, 809, 823, 1081
CviQI GTAC 1 cut(s) 1039
DdeI CTNAG 4 cut(s) 69, 873, 904, 932
DpnI GATC 5 cut(s) 201, 384, 579, 882, 983
DpnII GATC 5 cut(s) 199, 382, 577, 880, 981
DraI TTTAAA 1 cut(s) 745
DrdI GACNNNNNNGTC 1 cut(s) 779
DseDI GACNNNNNNGTC 1 cut(s) 779
EaeI YGGCCR 2 cut(s) 106, 1112
Eam1104I CTCTTC 4 cut(s) 41, 225, 344, 421
EarI CTCTTC 4 cut(s) 41, 225, 344, 421
EciI GGCGGA 1 cut(s) 893
Ecl136II GAGCTC 1 cut(s) 897
Eco130I CCWWGG 2 cut(s) 109, 700
Eco24I GRGCYC 2 cut(s) 127, 899
Eco47I GGWCC 2 cut(s) 53, 276
Eco53kI GAGCTC 1 cut(s) 897
Eco57I CTGAAG 1 cut(s) 224
Eco81I CCTNAGG 1 cut(s) 873
EcoICRI GAGCTC 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 485
EcoRII CCWGG 4 cut(s) 56, 298, 990, 1074
EcoT14I CCWWGG 2 cut(s) 109, 700
EcoT38I GRGCYC 2 cut(s) 127, 899
ErhI CCWWGG 2 cut(s) 109, 700
FaeI CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 767, 799
FaqI GGGAC 1 cut(s) 39
FatI CATG 8 cut(s) 23, 109, 253, 516, 670, 808, 822, 1080
FbaI TGATCA 2 cut(s) 382, 577
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 706
FokI GGATG 3 cut(s) 274, 1022, 1097
FriOI GRGCYC 2 cut(s) 127, 899
Fsp4HI GCNGC 1 cut(s) 706
FspBI CTAG 3 cut(s) 432, 453, 911
GluI GCNGC 1 cut(s) 706
GsuI CTGGAG 2 cut(s) 79, 139
HaeIII GGCC 6 cut(s) 108, 196, 721, 957, 1105, 1114
HapII CCGG 2 cut(s) 529, 1031
Hin1II CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 6 cut(s) 61, 236, 395, 674, 800, 965
HpaII CCGG 2 cut(s) 529, 1031
Hpy166II GTNNAC 3 cut(s) 146, 542, 645
Hpy188I TCNGA 6 cut(s) 70, 99, 204, 805, 885, 1097
Hpy188III TCNNGA 4 cut(s) 322, 453, 671, 817
Hpy8I GTNNAC 3 cut(s) 146, 542, 645
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 5 cut(s) 4, 75, 200, 1000, 1116
HpyCH4III ACNGT 2 cut(s) 539, 1043
HpyCH4IV ACGT 1 cut(s) 641
HpyCH4V TGCA 4 cut(s) 287, 770, 1013, 1064
HpyF10VI GCNNNNNNNGC 2 cut(s) 705, 1111
HpyF3I CTNAG 4 cut(s) 69, 873, 904, 932
HpySE526I ACGT 1 cut(s) 641
Hsp92II CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
Ksp22I TGATCA 2 cut(s) 382, 577
Kzo9I GATC 5 cut(s) 199, 382, 577, 880, 981
LmnI GCTCC 2 cut(s) 473, 749
LweI GCATC 4 cut(s) 296, 502, 613, 1000
MaeI CTAG 3 cut(s) 432, 453, 911
MaeII ACGT 1 cut(s) 641
MaeIII GTNAC 5 cut(s) 113, 212, 598, 935, 1043
MalI GATC 5 cut(s) 201, 384, 579, 882, 983
MboI GATC 5 cut(s) 199, 382, 577, 880, 981
MhlI GDGCHC 3 cut(s) 127, 843, 899
MlsI TGGCCA 1 cut(s) 1114
MluCI AATT 9 cut(s) 243, 282, 485, 550, 691, 765, 789, 1022, 1068
MluNI TGGCCA 1 cut(s) 1114
MlyI GAGTC 5 cut(s) 70, 245, 404, 668, 809
Mox20I TGGCCA 1 cut(s) 1114
MscI TGGCCA 1 cut(s) 1114
MseI TTAA 3 cut(s) 183, 246, 744
MslI CAYNNNNRTG 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 1114
MspA1I CMGCKG 1 cut(s) 482
MspI CCGG 2 cut(s) 529, 1031
MspR9I CCNGG 4 cut(s) 58, 300, 992, 1076
MvaI CCWGG 4 cut(s) 58, 300, 992, 1076
MwoI GCNNNNNNNGC 2 cut(s) 705, 1111
NcoI CCATGG 1 cut(s) 109
NdeII GATC 5 cut(s) 199, 382, 577, 880, 981
NlaIII CATG 8 cut(s) 27, 113, 257, 520, 674, 812, 826, 1084
NlaIV GGNNCC 2 cut(s) 55, 475
NmuCI GTSAC 1 cut(s) 1043
NspI RCATGY 2 cut(s) 520, 826
PagI TCATGA 1 cut(s) 670
PciI ACATGT 2 cut(s) 516, 822
PfeI GAWTC 1 cut(s) 965
PflMI CCANNNNNTGG 1 cut(s) 1081
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 1 cut(s) 707
PleI GAGTC 5 cut(s) 69, 244, 403, 668, 808
PpsI GAGTC 5 cut(s) 69, 244, 403, 668, 808
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 2 cut(s) 516, 822
Psp124BI GAGCTC 1 cut(s) 899
Psp1406I AACGTT 1 cut(s) 641
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 4 cut(s) 56, 298, 990, 1074
PspGI CCWGG 4 cut(s) 56, 298, 990, 1074
PspN4I GGNNCC 2 cut(s) 55, 475
PspPI GGNCC 2 cut(s) 53, 276
PspPPI RGGWCCY 1 cut(s) 53
PsrI GAACNNNNNNTAC 2 cut(s) 852, 884
PstI CTGCAG 1 cut(s) 1066
RsaI GTAC 1 cut(s) 1040
RsaNI GTAC 1 cut(s) 1039
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 899
SaqAI TTAA 3 cut(s) 183, 246, 744
SatI GCNGC 1 cut(s) 706
Sau3AI GATC 5 cut(s) 199, 382, 577, 880, 981
Sau96I GGNCC 2 cut(s) 53, 276
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 5 cut(s) 70, 245, 404, 668, 809
ScrFI CCNGG 4 cut(s) 58, 300, 992, 1076
SduI GDGCHC 3 cut(s) 127, 843, 899
SfaNI GCATC 4 cut(s) 296, 502, 613, 1000
SfcI CTRYAG 1 cut(s) 1062
SfiI GGCCNNNNNGGCC 1 cut(s) 1111
SinI GGWCC 2 cut(s) 53, 276
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 76, 959
SmoI CTYRAG 2 cut(s) 76, 959
Sse9I AATT 9 cut(s) 243, 282, 485, 550, 691, 765, 789, 1022, 1068
SsiI CCGC 5 cut(s) 346, 480, 705, 708, 878
SspMI CTAG 3 cut(s) 432, 453, 911
SstI GAGCTC 1 cut(s) 899
StyD4I CCNGG 4 cut(s) 56, 298, 990, 1074
StyI CCWWGG 2 cut(s) 109, 700
TaaI ACNGT 2 cut(s) 539, 1043
TaiI ACGT 1 cut(s) 644
TaqI TCGA 3 cut(s) 489, 554, 798
TaqII GACCGA 1 cut(s) 992
TasI AATT 9 cut(s) 243, 282, 485, 550, 691, 765, 789, 1022, 1068
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 1 cut(s) 708
TfiI GAWTC 1 cut(s) 965
Tru1I TTAA 3 cut(s) 183, 246, 744
Tru9I TTAA 3 cut(s) 183, 246, 744
TseFI GTSAC 1 cut(s) 1043
Tsp45I GTSAC 1 cut(s) 1043
TspDTI ATGAA 6 cut(s) 82, 270, 429, 654, 771, 1019
Van91I CCANNNNNTGG 1 cut(s) 1081
VpaK11BI GGWCC 2 cut(s) 53, 276
XapI RAATTY 3 cut(s) 485, 691, 789
XbaI TCTAGA 1 cut(s) 452
XceI RCATGY 2 cut(s) 520, 826
XmiI GTMKAC 1 cut(s) 145
XspI CTAG 3 cut(s) 432, 453, 911
ZrmI AGTACT 1 cut(s) 1040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.