Rroxscaffold_1G00054330
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011541
Physical Location & Seq
Reverse (-)
75723175 .. 75726437
3263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054330.1

Sequence Viewer

Length: 618 bp
ATGTCCAAAAACCGGAACGACTGTGAACTGCCCAATTCGATGACAATCCAAGAAAAACTTGATCAAAATATACCAATGGAAGTAACAAATCAAGTAAGGGTTGATGATGCTAAAGGCGTGAAATCGTTGACCATAAGTTCTTCCTTTTCATCTCATGACTCCTCAAACGGCTCAAGTTCGAGCCAAGGCGGCGGTATTTCAAGGCCAGATGATTTGGTGTTTGACTTTAAAGGAGCTTATGAACCTCAAATTGCAGACAAGGAAGTCTTTGAAATTCCATTCGAGTCTGACCATGATTTCTGGAACATGTTAGATGAGTTTGTGCCCTTTCAGTCAAACCCTGAACGTCTATTACCTCAGGCGGATCAGACCTACCAGAGCTCAAACTTAGAGCTAGTTGAAAGTGGAAAGTGGCTCAGTTACTTGGAGAGTGAGCTTGGCCTTGAGGATTCAACAAAGACCGAGATCAACAACCAGGATTTTGTGATGAAGGATTCAACTGAACAATTAGTGCCGGAGAAGTACTGTGACAAGTTGCCAAAGCCTGCAGAAATTGACCAGGACATGGATGATTACTTCGGAATGTGGCCCTCTTGGCCAGACAACTCTGGCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

205

Amino Acids

23.24

Weight (kDa)

4.15

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 565
AciI CCGC 3 cut(s) 189, 192, 362
AclWI GGATC 1 cut(s) 372
AcoI YGGCCR 1 cut(s) 596
AcsI RAATTY 1 cut(s) 273
AfaI GTAC 1 cut(s) 524
AfiI CCNNNNNNNGG 2 cut(s) 12, 565
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 5 cut(s) 201, 272, 401, 453, 498
AjnI CCWGG 2 cut(s) 474, 558
AluBI AGCT 4 cut(s) 236, 381, 394, 436
AluI AGCT 4 cut(s) 236, 381, 394, 436
Alw21I GWGCWC 1 cut(s) 383
AlwI GGATC 1 cut(s) 372
AoxI GGCC 4 cut(s) 203, 439, 587, 596
ApoI RAATTY 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 588
AxyI CCTNAGG 1 cut(s) 357
BaeGI GKGCMC 1 cut(s) 327
BalI TGGCCA 1 cut(s) 598
BanII GRGCYC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 383
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 476, 560
BclI TGATCA 1 cut(s) 61
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 1 cut(s) 546
BglI GCCNNNNNGGC 2 cut(s) 189, 595
BisI GCNGC 1 cut(s) 190
BlsI GCNGC 1 cut(s) 191
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 2 cut(s) 476, 560
BmgT120I GGNCC 1 cut(s) 588
BmrFI CCNGG 2 cut(s) 476, 560
BmsI GCATC 1 cut(s) 97
BpuEI CTTGAG 2 cut(s) 157, 464
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 184
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 2 cut(s) 12, 565
Bse21I CCTNAGG 1 cut(s) 357
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 2 cut(s) 476, 560
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 574
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 2 cut(s) 12, 565
BseMII CTCAG 2 cut(s) 371, 430
BseRI GAGGAG 1 cut(s) 151
BseSI GKGCMC 1 cut(s) 327
BshFI GGCC 4 cut(s) 205, 441, 589, 598
BsiHKAI GWGCWC 1 cut(s) 383
BsiSI CCGG 2 cut(s) 13, 515
BslI CCNNNNNNNGG 2 cut(s) 12, 565
BsnI GGCC 4 cut(s) 205, 441, 589, 598
Bsp1286I GDGCHC 2 cut(s) 327, 383
Bsp143I GATC 3 cut(s) 61, 364, 465
BspACI CCGC 3 cut(s) 189, 192, 362
BspANI GGCC 4 cut(s) 205, 441, 589, 598
BspCNI CTCAG 2 cut(s) 370, 429
BspHI TCATGA 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 550
BspPI GGATC 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 3 cut(s) 61, 364, 465
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 2 cut(s) 476, 560
Bst4CI ACNGT 2 cut(s) 23, 527
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 357, 388, 416
BstF5I GGATG 1 cut(s) 574
BstKTI GATC 3 cut(s) 64, 367, 468
BstMBI GATC 3 cut(s) 61, 364, 465
BstMWI GCNNNNNNNGC 2 cut(s) 189, 595
BstNI CCWGG 2 cut(s) 476, 560
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 2 cut(s) 474, 558
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 327
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 4 cut(s) 205, 441, 589, 598
BtsCI GGATG 1 cut(s) 574
Cac8I GCNNGC 1 cut(s) 546
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 588
Csp6I GTAC 1 cut(s) 523
CviAII CATG 4 cut(s) 155, 293, 307, 565
CviQI GTAC 1 cut(s) 523
DdeI CTNAG 3 cut(s) 357, 388, 416
DpnI GATC 3 cut(s) 63, 366, 467
DpnII GATC 3 cut(s) 61, 364, 465
DraI TTTAAA 1 cut(s) 229
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 1 cut(s) 596
EciI GGCGGA 1 cut(s) 377
Ecl136II GAGCTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 383
Eco53kI GAGCTC 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 474, 558
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 383
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 4 cut(s) 158, 296, 310, 568
FaiI YATR 7 cut(s) 71, 134, 156, 240, 294, 308, 566
FalI AAGNNNNNCTT 4 cut(s) 42, 74, 251, 283
FatI CATG 4 cut(s) 154, 292, 306, 564
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 190
FokI GGATG 1 cut(s) 581
FriOI GRGCYC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 190
FspBI CTAG 1 cut(s) 395
GluI GCNGC 1 cut(s) 190
HaeIII GGCC 4 cut(s) 205, 441, 589, 598
HapII CCGG 2 cut(s) 13, 515
Hin1II CATG 4 cut(s) 158, 296, 310, 568
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HinfI GANTC 4 cut(s) 158, 284, 449, 494
HpaII CCGG 2 cut(s) 13, 515
Hpy166II GTNNAC 2 cut(s) 26, 129
Hpy188I TCNGA 3 cut(s) 289, 369, 581
Hpy188III TCNNGA 2 cut(s) 155, 301
Hpy8I GTNNAC 2 cut(s) 26, 129
HpyAV CCTTC 1 cut(s) 484
HpyCH4III ACNGT 2 cut(s) 23, 527
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 2 cut(s) 254, 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 189, 595
HpyF3I CTNAG 3 cut(s) 357, 388, 416
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 4 cut(s) 158, 296, 310, 568
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 3 cut(s) 61, 364, 465
LmnI GCTCC 1 cut(s) 233
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 395
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 3 cut(s) 82, 419, 527
MalI GATC 3 cut(s) 63, 366, 467
MboI GATC 3 cut(s) 61, 364, 465
MboII GAAGA 1 cut(s) 132
MhlI GDGCHC 2 cut(s) 327, 383
MlsI TGGCCA 1 cut(s) 598
MluCI AATT 5 cut(s) 34, 249, 273, 506, 552
MluNI TGGCCA 1 cut(s) 598
MlyI GAGTC 2 cut(s) 152, 293
MnlI CCTC 5 cut(s) 172, 255, 366, 439, 601
Mox20I TGGCCA 1 cut(s) 598
MscI TGGCCA 1 cut(s) 598
MseI TTAA 1 cut(s) 228
Msp20I TGGCCA 1 cut(s) 598
MspI CCGG 2 cut(s) 13, 515
MspR9I CCNGG 2 cut(s) 476, 560
MvaI CCWGG 2 cut(s) 476, 560
MwoI GCNNNNNNNGC 2 cut(s) 189, 595
NdeII GATC 3 cut(s) 61, 364, 465
NlaIII CATG 4 cut(s) 158, 296, 310, 568
NmuCI GTSAC 1 cut(s) 527
NspI RCATGY 1 cut(s) 310
PagI TCATGA 1 cut(s) 154
PciI ACATGT 1 cut(s) 306
PfeI GAWTC 2 cut(s) 449, 494
PflMI CCANNNNNTGG 1 cut(s) 565
PkrI GCNGC 1 cut(s) 191
PleI GAGTC 2 cut(s) 152, 292
PpsI GAGTC 2 cut(s) 152, 292
PscI ACATGT 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 474, 558
PspGI CCWGG 2 cut(s) 474, 558
PspPI GGNCC 1 cut(s) 588
PsrI GAACNNNNNNTAC 2 cut(s) 336, 368
PstI CTGCAG 1 cut(s) 550
RsaI GTAC 1 cut(s) 524
RsaNI GTAC 1 cut(s) 523
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 190
Sau3AI GATC 3 cut(s) 61, 364, 465
Sau96I GGNCC 1 cut(s) 588
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 2 cut(s) 152, 293
ScrFI CCNGG 2 cut(s) 476, 560
SduI GDGCHC 2 cut(s) 327, 383
SetI ASST 8 cut(s) 238, 247, 349, 358, 374, 383, 396, 438
SfaNI GCATC 1 cut(s) 97
SfcI CTRYAG 1 cut(s) 546
SfiI GGCCNNNNNGGCC 1 cut(s) 595
SmlI CTYRAG 2 cut(s) 172, 443
SmoI CTYRAG 2 cut(s) 172, 443
Sse9I AATT 5 cut(s) 34, 249, 273, 506, 552
SsiI CCGC 3 cut(s) 189, 192, 362
SspMI CTAG 1 cut(s) 395
SstI GAGCTC 1 cut(s) 383
StyD4I CCNGG 2 cut(s) 474, 558
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 23, 527
TaiI ACGT 1 cut(s) 349
TaqI TCGA 3 cut(s) 38, 179, 282
TaqII GACCGA 1 cut(s) 476
TasI AATT 5 cut(s) 34, 249, 273, 506, 552
TatI WGTACW 1 cut(s) 522
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 449, 494
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseFI GTSAC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 3 cut(s) 138, 255, 503
Van91I CCANNNNNTGG 1 cut(s) 565
XapI RAATTY 1 cut(s) 273
XceI RCATGY 1 cut(s) 310
XspI CTAG 1 cut(s) 395
ZrmI AGTACT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.