MD10G1205400.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0011541
Physical Location & Seq
Forward (+)
30459629 .. 30463057
3429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1205400.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGGGGAAAAGGGAAAATCACTATGTTGTGATAAGGAGCAAGTGAGGAGGGGTCCTTGGAGCCCTGCTGAGGACTTGAAGCTCGTTACTTTCATTCAGAAAAATGGCCATCATAACTGGAGGGCTCTCCCTAGGCGAGCAGGTTTGATGAGATGTGGTAAAAGTTGCCGTTTGAGATGGATTAACTACCTTAGCCCTGATGTGAAGCGAGGGAACTTCACAAGAGAGGAAGAGGAGTCCATAATGAAGCTACATGAAGCCTTGGGAAACAAGTGGTCGACAATTGCAGCACATTTCCCGGGACGAACGGACAATGAGATTAAGAATGTGTGGAACACTCATCTAAAGAAAAGATTGGCTTGCCGAAACCTATCTTCCTTAACATCCTCTTCCTCATCATCTTCTTCTACTACTACTACATTATTGTCTAGTGGAAAATCAACTGTAGGAGGAGGGGATGAACTAATTGAGCATCAATCTGCTGACCAAGAAACTAGCATGGCCACCAACAACAAGCCACATGAGCCATGCAGTTTGACAATTCAAGAAAACCCCAATCATCAGGATTTTCCCATGGAATTAACAAATGATCCCAAGGGGTTGAAAGAGTTGACAACTTCTTCTAATGTTTCATCTAATGAATCCAACGGCTCAAGTAATTCCAGCCAAGTTGTTGGTATGTCAAGGCCAGGAGCAGAAGAGCAGCAAATGGATGATGATTCGATTGACCTTTCAGGAATTTTTGATAATCCATTTGAGTATGACTCTGACTTTTGGAACCTGTTGGATGACTTTCAGCCACTCCAATCAAATGAAGTCCAAGTACTTCATGAGGCTGATGAGGCTAATTACCAGAGCTCAGGCTTGGGACATGTGGAAAATGGGAATTGTCTTAGTTACTTGCAAAGTGAGCTTGGATTTGAAGCCGCAGCAACAGAGAGTGAGATCAACAACCAGGAGATATTACCAAAGGATGCGACTGAACAACCAGTCATCCCAGAGACCTTTGACAAAATGCCAAACCCTGCAGGATATGACGAGAGAATGGATTACTTTCAAACGTGGCTTTCTTCGCCACAAAACAATTCCACCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

366

Amino Acids

40.71

Weight (kDa)

4.87

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 1.9e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 79 5.3e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 115 1.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 278
AciI CCGC 1 cut(s) 927
AclWI GGATC 1 cut(s) 584
AcoI YGGCCR 2 cut(s) 106, 501
AcsI RAATTY 1 cut(s) 738
AfaI GTAC 1 cut(s) 825
AfiI CCNNNNNNNGG 1 cut(s) 70
AflIII ACRYGT 1 cut(s) 871
AgsI TTSAA 5 cut(s) 79, 545, 604, 923, 1058
AjnI CCWGG 2 cut(s) 688, 954
AluBI AGCT 4 cut(s) 82, 250, 858, 913
AluI AGCT 4 cut(s) 82, 250, 858, 913
Alw21I GWGCWC 1 cut(s) 860
Alw26I GTCTC 1 cut(s) 995
AlwI GGATC 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 298
AoxI GGCC 3 cut(s) 106, 501, 686
ApeKI GCWGC 3 cut(s) 287, 703, 929
ApoI RAATTY 1 cut(s) 738
AspA2I CCTAGG 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 53
AsuC2I CCSGG 2 cut(s) 299, 300
AvaI CYCGRG 1 cut(s) 298
AvaII GGWCC 1 cut(s) 53
AvrII CCTAGG 1 cut(s) 131
BalI TGGCCA 2 cut(s) 108, 503
BanII GRGCYC 3 cut(s) 65, 127, 860
BarI GAAGNNNNNNTAC 2 cut(s) 807, 839
Bbv12I GWGCWC 1 cut(s) 860
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 3 cut(s) 299, 715, 941
BccI CCATC 2 cut(s) 117, 171
BceAI ACGGC 2 cut(s) 153, 664
BciT130I CCWGG 2 cut(s) 690, 956
BcnI CCSGG 2 cut(s) 299, 300
BcoDI GTCTC 1 cut(s) 995
BfaI CTAG 3 cut(s) 132, 429, 495
BfmI CTRYAG 2 cut(s) 444, 1026
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 4 cut(s) 288, 704, 927, 930
BlnI CCTAGG 1 cut(s) 131
BlsI GCNGC 4 cut(s) 289, 705, 928, 931
BmcAI AGTACT 1 cut(s) 825
Bme1390I CCNGG 4 cut(s) 299, 300, 690, 956
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 3 cut(s) 54, 62, 779
BmrFI CCNGG 4 cut(s) 299, 300, 690, 956
BmsI GCATC 2 cut(s) 481, 964
BplI GAGNNNNNCTC 2 cut(s) 749, 781
BpmI CTGGAG 1 cut(s) 139
Bpu10I CCTNAGC 3 cut(s) 69, 191, 859
BpuEI CTTGAG 1 cut(s) 637
BpuMI CCSGG 2 cut(s) 299, 300
BsaI GGTCTC 1 cut(s) 995
BsaJI CCNNGG 6 cut(s) 56, 131, 261, 298, 573, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse1I ACTGG 2 cut(s) 122, 989
BseBI CCWGG 2 cut(s) 690, 956
BseDI CCNNGG 6 cut(s) 56, 131, 261, 298, 573, 594
BseGI GGATG 6 cut(s) 383, 463, 718, 793, 979, 993
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 60, 873
BseNI ACTGG 2 cut(s) 122, 989
BseRI GAGGAG 3 cut(s) 61, 248, 465
BseXI GCAGC 3 cut(s) 299, 715, 941
BshFI GGCC 3 cut(s) 108, 503, 688
BsiHKAI GWGCWC 1 cut(s) 860
BsiHKCI CYCGRG 1 cut(s) 298
BsiSI CCGG 1 cut(s) 299
BslFI GGGAC 2 cut(s) 315, 882
BslI CCNNNNNNNGG 1 cut(s) 70
BsmAI GTCTC 1 cut(s) 995
BsmFI GGGAC 2 cut(s) 315, 882
BsnI GGCC 3 cut(s) 108, 503, 688
Bso31I GGTCTC 1 cut(s) 995
BsoBI CYCGRG 1 cut(s) 298
Bsp1286I GDGCHC 3 cut(s) 65, 127, 860
Bsp143I GATC 2 cut(s) 589, 945
Bsp19I CCATGG 1 cut(s) 573
BspACI CCGC 1 cut(s) 927
BspANI GGCC 3 cut(s) 108, 503, 688
BspCNI CTCAG 2 cut(s) 61, 872
BspHI TCATGA 1 cut(s) 829
BspLI GGNNCC 3 cut(s) 54, 62, 779
BspMAI CTGCAG 1 cut(s) 1030
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 584
BspQI GCTCTTC 1 cut(s) 693
BspTNI GGTCTC 1 cut(s) 995
BsrI ACTGG 2 cut(s) 122, 989
BssECI CCNNGG 6 cut(s) 56, 131, 261, 298, 573, 594
BssMI GATC 2 cut(s) 589, 945
BssT1I CCWWGG 5 cut(s) 56, 131, 261, 573, 594
Bst2UI CCWGG 2 cut(s) 690, 956
Bst4CI ACNGT 1 cut(s) 445
Bst6I CTCTTC 3 cut(s) 225, 394, 693
BstC8I GCNNGC 2 cut(s) 138, 361
BstDEI CTNAG 4 cut(s) 69, 191, 859, 893
BstDSI CCRYGG 1 cut(s) 573
BstF5I GGATG 6 cut(s) 383, 463, 718, 793, 979, 993
BstKTI GATC 2 cut(s) 592, 948
BstMAI GTCTC 1 cut(s) 995
BstMBI GATC 2 cut(s) 589, 945
BstMWI GCNNNNNNNGC 4 cut(s) 523, 842, 910, 1072
BstNI CCWGG 2 cut(s) 690, 956
BstNSI RCATGY 1 cut(s) 875
BstSCI CCNGG 4 cut(s) 297, 298, 688, 954
BstSFI CTRYAG 2 cut(s) 444, 1026
BstV1I GCAGC 3 cut(s) 299, 715, 941
BstXI CCANNNNNNTGG 1 cut(s) 674
BsuRI GGCC 3 cut(s) 108, 503, 688
BtgI CCRYGG 1 cut(s) 573
BtsCI GGATG 6 cut(s) 383, 463, 718, 793, 979, 993
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 2 cut(s) 138, 361
CciI TCATGA 1 cut(s) 829
Cfr13I GGNCC 1 cut(s) 53
Cfr9I CCCGGG 1 cut(s) 298
Csp6I GTAC 1 cut(s) 824
CviAII CATG 7 cut(s) 254, 499, 521, 528, 574, 830, 872
CviQI GTAC 1 cut(s) 824
DdeI CTNAG 4 cut(s) 69, 191, 859, 893
DpnI GATC 2 cut(s) 591, 947
DpnII GATC 2 cut(s) 589, 945
EaeI YGGCCR 2 cut(s) 106, 501
Eam1104I CTCTTC 3 cut(s) 225, 394, 693
EarI CTCTTC 3 cut(s) 225, 394, 693
Ecl136II GAGCTC 1 cut(s) 858
Eco130I CCWWGG 5 cut(s) 56, 131, 261, 573, 594
Eco24I GRGCYC 3 cut(s) 65, 127, 860
Eco31I GGTCTC 1 cut(s) 995
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 858
Eco88I CYCGRG 1 cut(s) 298
EcoICRI GAGCTC 1 cut(s) 858
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 688, 954
EcoT14I CCWWGG 5 cut(s) 56, 131, 261, 573, 594
EcoT38I GRGCYC 3 cut(s) 65, 127, 860
ErhI CCWWGG 5 cut(s) 56, 131, 261, 573, 594
FaeI CATG 7 cut(s) 257, 502, 524, 531, 577, 833, 875
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 2 cut(s) 315, 882
FatI CATG 7 cut(s) 253, 498, 520, 527, 573, 829, 871
FblI GTMKAC 1 cut(s) 278
Fnu4HI GCNGC 4 cut(s) 288, 704, 927, 930
FokI GGATG 6 cut(s) 370, 470, 725, 800, 980, 986
FriOI GRGCYC 3 cut(s) 65, 127, 860
Fsp4HI GCNGC 4 cut(s) 288, 704, 927, 930
FspBI CTAG 3 cut(s) 132, 429, 495
GluI GCNGC 4 cut(s) 288, 704, 927, 930
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 3 cut(s) 108, 503, 688
HapII CCGG 1 cut(s) 299
Hin1II CATG 7 cut(s) 257, 502, 524, 531, 577, 833, 875
HincII GTYRAC 2 cut(s) 279, 612
HindII GTYRAC 2 cut(s) 279, 612
HinfI GANTC 4 cut(s) 236, 641, 719, 764
HpaII CCGG 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 279, 612
Hpy188I TCNGA 2 cut(s) 99, 769
Hpy188III TCNNGA 4 cut(s) 545, 563, 735, 830
Hpy8I GTNNAC 2 cut(s) 279, 612
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 1 cut(s) 1061
HpyCH4V TGCA 4 cut(s) 287, 531, 904, 1028
HpyF10VI GCNNNNNNNGC 4 cut(s) 523, 842, 910, 1072
HpyF3I CTNAG 4 cut(s) 69, 191, 859, 893
HpySE526I ACGT 1 cut(s) 1061
Hsp92II CATG 7 cut(s) 257, 502, 524, 531, 577, 833, 875
Kzo9I GATC 2 cut(s) 589, 945
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 3 cut(s) 37, 60, 692
Lsp1109I GCAGC 3 cut(s) 299, 715, 941
LweI GCATC 2 cut(s) 481, 964
MaeI CTAG 3 cut(s) 132, 429, 495
MaeII ACGT 1 cut(s) 1061
MaeIII GTNAC 2 cut(s) 85, 896
MalI GATC 2 cut(s) 591, 947
MboI GATC 2 cut(s) 589, 945
MboII GAAGA 8 cut(s) 242, 366, 381, 393, 396, 612, 710, 1062
MfeI CAATTG 1 cut(s) 282
MhlI GDGCHC 3 cut(s) 65, 127, 860
MlsI TGGCCA 2 cut(s) 108, 503
MluCI AATT 9 cut(s) 282, 465, 540, 578, 658, 738, 847, 886, 1084
MluNI TGGCCA 2 cut(s) 108, 503
MlyI GAGTC 2 cut(s) 245, 758
MmeI TCCRAC 2 cut(s) 669, 765
Mox20I TGGCCA 2 cut(s) 108, 503
MscI TGGCCA 2 cut(s) 108, 503
MseI TTAA 5 cut(s) 183, 321, 380, 581, 1096
Msp20I TGGCCA 2 cut(s) 108, 503
MspI CCGG 1 cut(s) 299
MspR9I CCNGG 4 cut(s) 299, 300, 690, 956
MunI CAATTG 1 cut(s) 282
MvaI CCWGG 2 cut(s) 690, 956
MwoI GCNNNNNNNGC 4 cut(s) 523, 842, 910, 1072
NciI CCSGG 2 cut(s) 299, 300
NcoI CCATGG 1 cut(s) 573
NdeII GATC 2 cut(s) 589, 945
NlaIII CATG 7 cut(s) 257, 502, 524, 531, 577, 833, 875
NlaIV GGNNCC 3 cut(s) 54, 62, 779
NspI RCATGY 1 cut(s) 875
PagI TCATGA 1 cut(s) 829
PciI ACATGT 1 cut(s) 871
PciSI GCTCTTC 1 cut(s) 693
PfeI GAWTC 2 cut(s) 641, 719
PkrI GCNGC 4 cut(s) 289, 705, 928, 931
PleI GAGTC 2 cut(s) 244, 758
PpsI GAGTC 2 cut(s) 244, 758
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 1 cut(s) 871
Psp124BI GAGCTC 1 cut(s) 860
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 2 cut(s) 688, 954
PspGI CCWGG 2 cut(s) 688, 954
PspN4I GGNNCC 3 cut(s) 54, 62, 779
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PstI CTGCAG 1 cut(s) 1030
RsaI GTAC 1 cut(s) 825
RsaNI GTAC 1 cut(s) 824
SacI GAGCTC 1 cut(s) 860
SalI GTCGAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 5 cut(s) 183, 321, 380, 581, 1096
SatI GCNGC 4 cut(s) 288, 704, 927, 930
Sau3AI GATC 2 cut(s) 589, 945
Sau96I GGNCC 1 cut(s) 53
SbfI CCTGCAGG 1 cut(s) 1030
ScaI AGTACT 1 cut(s) 825
SchI GAGTC 2 cut(s) 245, 758
ScrFI CCNGG 4 cut(s) 299, 300, 690, 956
SdaI CCTGCAGG 1 cut(s) 1030
SduI GDGCHC 3 cut(s) 65, 127, 860
SfaNI GCATC 2 cut(s) 481, 964
SfcI CTRYAG 2 cut(s) 444, 1026
SinI GGWCC 1 cut(s) 53
SmaI CCCGGG 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 652
SmoI CTYRAG 1 cut(s) 652
Sse8387I CCTGCAGG 1 cut(s) 1030
Sse9I AATT 9 cut(s) 282, 465, 540, 578, 658, 738, 847, 886, 1084
SsiI CCGC 1 cut(s) 927
SspMI CTAG 3 cut(s) 132, 429, 495
SstI GAGCTC 1 cut(s) 860
StyD4I CCNGG 4 cut(s) 297, 298, 688, 954
StyI CCWWGG 5 cut(s) 56, 131, 261, 573, 594
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 1 cut(s) 1064
TaqI TCGA 2 cut(s) 278, 722
TasI AATT 9 cut(s) 282, 465, 540, 578, 658, 738, 847, 886, 1084
TatI WGTACW 1 cut(s) 823
TauI GCSGC 1 cut(s) 929
TfiI GAWTC 2 cut(s) 641, 719
Tru1I TTAA 5 cut(s) 183, 321, 380, 581, 1096
Tru9I TTAA 5 cut(s) 183, 321, 380, 581, 1096
TseI GCWGC 3 cut(s) 287, 703, 929
TspDTI ATGAA 8 cut(s) 82, 260, 270, 474, 621, 654, 818, 828
TspGWI ACGGA 1 cut(s) 323
TspMI CCCGGG 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 1 cut(s) 738
XceI RCATGY 1 cut(s) 875
XmaI CCCGGG 1 cut(s) 298
XmaJI CCTAGG 1 cut(s) 131
XmiI GTMKAC 1 cut(s) 278
XspI CTAG 3 cut(s) 132, 429, 495
ZrmI AGTACT 1 cut(s) 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.