pycom05g20680
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011541
Physical Location & Seq
Forward (+)
23456517 .. 23459696
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g20680.1

Sequence Viewer

Length: 1092 bp
ATGGGGGGAAAGGGAAGATCACCATGTTGTGATAAGGAGAAAGTGAAGAGGGGTCCTTGGAGCCCTGCTGAAGACTTGAGGCTCATTACTTTCATTCAGAAAAATGGCCATGATAACTGGAGGGCTCTCCCTAAGCGAGCAGGTTTGCTGAGATGTGGTAAAAGTTGCCGTTTGAGATGGATTAATTACCTTAGGCCTGATGTGAAGCGAGGGAACTTCACTATTGAGGAAGAGGAGTCCATAATCAGGCTACATGAAGCCTTGGGAAACAAGTGGTCAAAAATTGCAGCACATTTTCCTGGAAGAACGGACAATGAGATTAAGAATGTGTGGAACACTCATCTAAAGAAAAGATTGGGTTGCCAAAATTTACCATCCTCTTCCTCGTCATCTTCTTCTACTACTAGTACTACATTATTGTCTGGTGGAAAACCAAGTGTAGGAGGAGGGGAAGAACTAATTGAGCATCAATCTGCTGAAGAAACTAGCATGGCCACCAACAACAAACCTCATGAACGATGCAGTTTGACAATTCAAGAAAACCCTAATCATCATGATTCTCCAATGGAATTAACAAATGATCCCAAGGAGTTAACAGGGTTGACCACTTCTTCTAATGTTTCTTCTAATGAATCCAATGGCTCAAGTAGTTCCAGCCAAGTTGCTGGTATGTCAAGGCCAGGTGCAGAAGAGCAGCAAATGGATGATTCAAACGACTTTTCAGGAATTTTTGATTTTCCATTTGAGTCTGACTCTGATTTTTGGGACATGTTCAATGACTTTGAGCCACTCCAGTCAAATTTAGTCCAAGTACTTCATGAGGCTGATGAGGCTAATTGCCAGAGATCGGGCTTGGGACAAGTGGAAAATGGGAAGTGGCTTAGTTACTTGGAAAGTGAACTTGGACTTGAAGTAACACCAACGGAGAGTGAGAAAAATAACCAGGAGATTTTACCGAAGTATGCAAGTGAACAACAAGTCTTCCCAGAGGCTTTTGACAAAATGCCAAATCCTACAGAAGCTGACGAGAGCATGGATTACTTTAATTCAAACGTGGCCTTCGCCACACAACAATTCCTCCATTCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

364

Amino Acids

40.5

Weight (kDa)

5.04

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 17 - 64 1.3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 20 - 79 1.5e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 70 - 115 1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 73 - 117 1.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 2 cut(s) 106, 492
AcsI RAATTY 3 cut(s) 367, 726, 799
AcuI CTGAAG 2 cut(s) 90, 498
AfaI GTAC 2 cut(s) 409, 813
AfiI CCNNNNNNNGG 3 cut(s) 246, 440, 847
AflIII ACRYGT 1 cut(s) 768
AgsI TTSAA 6 cut(s) 536, 711, 775, 911, 1050, 1086
AhlI ACTAGT 1 cut(s) 404
AjnI CCWGG 3 cut(s) 298, 679, 942
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
AluBI AGCT 1 cut(s) 1022
AluI AGCT 1 cut(s) 1022
AlwI GGATC 1 cut(s) 575
AlwNI CAGNNNCTG 1 cut(s) 1022
AoxI GGCC 5 cut(s) 106, 194, 492, 677, 1056
ApeKI GCWGC 2 cut(s) 287, 694
ApoI RAATTY 3 cut(s) 367, 726, 799
AseI ATTAAT 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 12
AvaII GGWCC 1 cut(s) 53
AxyI CCTNAGG 1 cut(s) 191
BalI TGGCCA 2 cut(s) 108, 494
BanII GRGCYC 2 cut(s) 65, 127
BbsI GAAGAC 2 cut(s) 78, 973
BbvI GCAGC 2 cut(s) 299, 706
BccI CCATC 2 cut(s) 171, 382
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 3 cut(s) 300, 681, 944
BcuI ACTAGT 1 cut(s) 404
BfaI CTAG 2 cut(s) 405, 486
BfmI CTRYAG 1 cut(s) 1014
BfuAI ACCTGC 1 cut(s) 131
BisI GCNGC 2 cut(s) 288, 695
BlsI GCNGC 2 cut(s) 289, 696
BmcAI AGTACT 2 cut(s) 409, 813
Bme1390I CCNGG 3 cut(s) 300, 681, 944
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 54, 62
BmrFI CCNGG 3 cut(s) 300, 681, 944
BmsI GCATC 2 cut(s) 475, 509
BpiI GAAGAC 2 cut(s) 78, 973
BplI GAGNNNNNCTC 2 cut(s) 737, 769
BpmI CTGGAG 2 cut(s) 139, 776
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 2 cut(s) 97, 628
BsaJI CCNNGG 3 cut(s) 56, 261, 585
BsaXI ACNNNNNCTCC 2 cut(s) 1062, 1092
Bsc4I CCNNNNNNNGG 3 cut(s) 246, 440, 847
Bse1I ACTGG 2 cut(s) 122, 793
Bse21I CCTNAGG 1 cut(s) 191
BseBI CCWGG 3 cut(s) 300, 681, 944
BseDI CCNNGG 3 cut(s) 56, 261, 585
BseGI GGATG 2 cut(s) 374, 709
BseLI CCNNNNNNNGG 3 cut(s) 246, 440, 847
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 122, 793
BseRI GAGGAG 2 cut(s) 248, 459
BseXI GCAGC 2 cut(s) 299, 706
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 5 cut(s) 108, 196, 494, 679, 1058
BslFI GGGAC 2 cut(s) 779, 870
BslI CCNNNNNNNGG 3 cut(s) 246, 440, 847
BsmFI GGGAC 2 cut(s) 779, 870
BsnI GGCC 5 cut(s) 108, 196, 494, 679, 1058
Bsp1286I GDGCHC 2 cut(s) 65, 127
Bsp143I GATC 3 cut(s) 17, 580, 845
BspANI GGCC 5 cut(s) 108, 196, 494, 679, 1058
BspCNI CTCAG 1 cut(s) 141
BspHI TCATGA 3 cut(s) 511, 553, 817
BspLI GGNNCC 2 cut(s) 54, 62
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 1 cut(s) 575
BspQI GCTCTTC 1 cut(s) 684
BsrI ACTGG 2 cut(s) 122, 793
BssECI CCNNGG 3 cut(s) 56, 261, 585
BssMI GATC 3 cut(s) 17, 580, 845
BssT1I CCWWGG 3 cut(s) 56, 261, 585
Bst2UI CCWGG 3 cut(s) 300, 681, 944
Bst6I CTCTTC 4 cut(s) 41, 225, 385, 684
BstC8I GCNNGC 1 cut(s) 138
BstDEI CTNAG 4 cut(s) 132, 149, 191, 881
BstF5I GGATG 2 cut(s) 374, 709
BstKTI GATC 3 cut(s) 20, 583, 848
BstMBI GATC 3 cut(s) 17, 580, 845
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 3 cut(s) 300, 681, 944
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 3 cut(s) 298, 679, 942
BstSFI CTRYAG 1 cut(s) 1014
BstV1I GCAGC 2 cut(s) 299, 706
BstV2I GAAGAC 2 cut(s) 78, 973
BstXI CCANNNNNNTGG 1 cut(s) 665
Bsu36I CCTNAGG 1 cut(s) 191
BsuRI GGCC 5 cut(s) 108, 196, 494, 679, 1058
BtsCI GGATG 2 cut(s) 374, 709
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 138
CaiI CAGNNNCTG 1 cut(s) 1022
CciI TCATGA 3 cut(s) 511, 553, 817
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 2 cut(s) 408, 812
CviAII CATG 9 cut(s) 24, 110, 254, 490, 512, 554, 769, 818, 1033
CviQI GTAC 2 cut(s) 408, 812
DdeI CTNAG 4 cut(s) 132, 149, 191, 881
DpnI GATC 3 cut(s) 19, 582, 847
DpnII GATC 3 cut(s) 17, 580, 845
EaeI YGGCCR 2 cut(s) 106, 492
Eam1104I CTCTTC 4 cut(s) 41, 225, 385, 684
EarI CTCTTC 4 cut(s) 41, 225, 385, 684
Eco130I CCWWGG 3 cut(s) 56, 261, 585
Eco147I AGGCCT 1 cut(s) 196
Eco24I GRGCYC 2 cut(s) 65, 127
Eco47I GGWCC 1 cut(s) 53
Eco57I CTGAAG 2 cut(s) 90, 498
Eco81I CCTNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 53
EcoRII CCWGG 3 cut(s) 298, 679, 942
EcoT14I CCWWGG 3 cut(s) 56, 261, 585
EcoT38I GRGCYC 2 cut(s) 65, 127
ErhI CCWWGG 3 cut(s) 56, 261, 585
FaeI CATG 9 cut(s) 27, 113, 257, 493, 515, 557, 772, 821, 1036
FaqI GGGAC 2 cut(s) 779, 870
FatI CATG 9 cut(s) 23, 109, 253, 489, 511, 553, 768, 817, 1032
Fnu4HI GCNGC 2 cut(s) 288, 695
FokI GGATG 2 cut(s) 361, 716
FriOI GRGCYC 2 cut(s) 65, 127
Fsp4HI GCNGC 2 cut(s) 288, 695
FspBI CTAG 2 cut(s) 405, 486
GluI GCNGC 2 cut(s) 288, 695
GsuI CTGGAG 2 cut(s) 139, 776
HaeIII GGCC 5 cut(s) 108, 196, 494, 679, 1058
Hin1II CATG 9 cut(s) 27, 113, 257, 493, 515, 557, 772, 821, 1036
HincII GTYRAC 2 cut(s) 594, 603
HindII GTYRAC 2 cut(s) 594, 603
HinfI GANTC 6 cut(s) 236, 557, 632, 707, 746, 752
HpaI GTTAAC 1 cut(s) 594
HphI GGTGA 1 cut(s) 12
Hpy166II GTNNAC 4 cut(s) 594, 603, 899, 971
Hpy188I TCNGA 3 cut(s) 99, 751, 757
Hpy188III TCNNGA 5 cut(s) 512, 536, 554, 723, 818
Hpy8I GTNNAC 4 cut(s) 594, 603, 899, 971
HpyAV CCTTC 1 cut(s) 1069
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 4 cut(s) 287, 522, 686, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 4 cut(s) 132, 149, 191, 881
HpySE526I ACGT 1 cut(s) 1053
Hsp92II CATG 9 cut(s) 27, 113, 257, 493, 515, 557, 772, 821, 1036
KspAI GTTAAC 1 cut(s) 594
Kzo9I GATC 3 cut(s) 17, 580, 845
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 1 cut(s) 60
Lsp1109I GCAGC 2 cut(s) 299, 706
LweI GCATC 2 cut(s) 475, 509
MaeI CTAG 2 cut(s) 405, 486
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 2 cut(s) 884, 913
MalI GATC 3 cut(s) 19, 582, 847
MboI GATC 3 cut(s) 17, 580, 845
MhlI GDGCHC 2 cut(s) 65, 127
MlsI TGGCCA 2 cut(s) 108, 494
MluNI TGGCCA 2 cut(s) 108, 494
MlyI GAGTC 3 cut(s) 245, 746, 755
Mox20I TGGCCA 2 cut(s) 108, 494
MscI TGGCCA 2 cut(s) 108, 494
MseI TTAA 5 cut(s) 183, 321, 572, 593, 1044
Msp20I TGGCCA 2 cut(s) 108, 494
MspR9I CCNGG 3 cut(s) 300, 681, 944
MvaI CCWGG 3 cut(s) 300, 681, 944
MwoI GCNNNNNNNGC 1 cut(s) 830
NdeII GATC 3 cut(s) 17, 580, 845
NlaIII CATG 9 cut(s) 27, 113, 257, 493, 515, 557, 772, 821, 1036
NlaIV GGNNCC 2 cut(s) 54, 62
NspI RCATGY 1 cut(s) 772
PagI TCATGA 3 cut(s) 511, 553, 817
PceI AGGCCT 1 cut(s) 196
PciI ACATGT 1 cut(s) 768
PciSI GCTCTTC 1 cut(s) 684
PfeI GAWTC 3 cut(s) 557, 632, 707
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 2 cut(s) 289, 696
PleI GAGTC 3 cut(s) 244, 746, 754
PpsI GAGTC 3 cut(s) 244, 746, 754
PpuMI RGGWCCY 1 cut(s) 53
PscI ACATGT 1 cut(s) 768
PshBI ATTAAT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 53
Psp6I CCWGG 3 cut(s) 298, 679, 942
PspGI CCWGG 3 cut(s) 298, 679, 942
PspN4I GGNNCC 2 cut(s) 54, 62
PspPI GGNCC 1 cut(s) 53
PspPPI RGGWCCY 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 1022
RsaI GTAC 2 cut(s) 409, 813
RsaNI GTAC 2 cut(s) 408, 812
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 5 cut(s) 183, 321, 572, 593, 1044
SatI GCNGC 2 cut(s) 288, 695
Sau3AI GATC 3 cut(s) 17, 580, 845
Sau96I GGNCC 1 cut(s) 53
ScaI AGTACT 2 cut(s) 409, 813
SchI GAGTC 3 cut(s) 245, 746, 755
ScrFI CCNGG 3 cut(s) 300, 681, 944
SduI GDGCHC 2 cut(s) 65, 127
SetI ASST 6 cut(s) 145, 192, 511, 685, 1024, 1056
SfaNI GCATC 2 cut(s) 475, 509
SfcI CTRYAG 1 cut(s) 1014
SinI GGWCC 1 cut(s) 53
SmlI CTYRAG 2 cut(s) 76, 643
SmoI CTYRAG 2 cut(s) 76, 643
SpeI ACTAGT 1 cut(s) 404
SseBI AGGCCT 1 cut(s) 196
SspMI CTAG 2 cut(s) 405, 486
StuI AGGCCT 1 cut(s) 196
StyD4I CCNGG 3 cut(s) 298, 679, 942
StyI CCWWGG 3 cut(s) 56, 261, 585
TaiI ACGT 1 cut(s) 1056
TatI WGTACW 2 cut(s) 407, 811
TfiI GAWTC 3 cut(s) 557, 632, 707
Tru1I TTAA 5 cut(s) 183, 321, 572, 593, 1044
Tru9I TTAA 5 cut(s) 183, 321, 572, 593, 1044
TseI GCWGC 2 cut(s) 287, 694
TspDTI ATGAA 5 cut(s) 82, 270, 528, 645, 806
TspGWI ACGGA 2 cut(s) 323, 938
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 183
XapI RAATTY 3 cut(s) 367, 726, 799
XceI RCATGY 1 cut(s) 772
XspI CTAG 2 cut(s) 405, 486
ZrmI AGTACT 2 cut(s) 409, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.